RNA–Protein interactions for RNA: YDL060W

TSR1, Transcript of Protein required for processing of 20S pre-rRNA in the cytoplasm, yeast

Gene TSR1, Length 2,367 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TSR1	YDL060W	STE14	P32584	239 aa		4.14	□□□□□ -1.75
TSR1	YDL060W	TDA3	P38758	523 aa		4.14	□□□□□ -1.75
TSR1	YDL060W	YHR078W	P38799	552 aa		4.14	□□□□□ -1.75
TSR1	YDL060W	HXT6	P39003	570 aa	Known RBP	4.14	□□□□□ -1.75
TSR1	YDL060W	HXT7	P39004	570 aa		4.14	□□□□□ -1.75
TSR1	YDL060W	RET2	P43621	546 aa		4.14	□□□□□ -1.75
TSR1	YDL060W	VPS4	P52917	437 aa		4.14	□□□□□ -1.75
TSR1	YDL060W	EIS1	Q05050	843 aa	Known RBP	4.14	□□□□□ -1.75
TSR1	YDL060W	TY2B-B	Q12491	1770 aa		4.14	□□□□□ -1.75
TSR1	YDL060W	SAN1	P22470	610 aa		4.13	□□□□□ -1.75
TSR1	YDL060W	RER1	P25560	188 aa		4.13	□□□□□ -1.75
TSR1	YDL060W	EMC3	P36039	253 aa		4.13	□□□□□ -1.75
TSR1	YDL060W	PSY4	P38193	441 aa		4.13	□□□□□ -1.75
TSR1	YDL060W	SUL1	P38359	859 aa		4.13	□□□□□ -1.75
TSR1	YDL060W	CTF8	P38877	133 aa		4.13	□□□□□ -1.75
TSR1	YDL060W	CNM67	P53865	581 aa	Known RBP	4.13	□□□□□ -1.75
TSR1	YDL060W	PDS5	Q04264	1277 aa		4.13	□□□□□ -1.75
TSR1	YDL060W	YLR352W	Q06479	807 aa		4.13	□□□□□ -1.75
TSR1	YDL060W	NUP157	P40064	1391 aa	Known RBP	4.13	□□□□□ -1.75
TSR1	YDL060W	RPO31	P04051	1460 aa		4.13	□□□□□ -1.75
TSR1	YDL060W	GFA1	P14742	717 aa	Known RBP	4.13	□□□□□ -1.75
TSR1	YDL060W	MIH1	P23748	554 aa		4.13	□□□□□ -1.75
TSR1	YDL060W	CCR4	P31384	837 aa	Known RBP	4.13	□□□□□ -1.75
TSR1	YDL060W	PZF1	P39933	429 aa		4.13	□□□□□ -1.75
TSR1	YDL060W	DOT6	P40059	670 aa	Known RBP	4.13	□□□□□ -1.75
TSR1	YDL060W	NHX1	Q04121	633 aa		4.13	□□□□□ -1.75
TSR1	YDL060W	BLS1	Q06071	122 aa		4.13	□□□□□ -1.75
TSR1	YDL060W	FBP1	P09201	348 aa		4.12	□□□□□ -1.75
TSR1	YDL060W	SUI2	P20459	304 aa	Known RBP	4.12	□□□□□ -1.75
TSR1	YDL060W	SHR5	P41912	237 aa		4.12	□□□□□ -1.75
TSR1	YDL060W	SGM1	P47166	707 aa		4.12	□□□□□ -1.75
TSR1	YDL060W	KIN4	Q01919	800 aa		4.12	□□□□□ -1.75
TSR1	YDL060W	SEC21	P32074	935 aa	Known RBP	4.12	□□□□□ -1.75
TSR1	YDL060W	PET309	P32522	965 aa	Predicted RBP	4.12	□□□□□ -1.75
TSR1	YDL060W	MUD2	P36084	527 aa	Known RBP	4.12	□□□□□ -1.75
TSR1	YDL060W	BCD1	P38772	366 aa		4.12	□□□□□ -1.75
TSR1	YDL060W	APE4	P38821	490 aa		4.12	□□□□□ -1.75
TSR1	YDL060W	DSN1	P40568	576 aa		4.12	□□□□□ -1.75
TSR1	YDL060W	SMC3	P47037	1230 aa		4.12	□□□□□ -1.75
TSR1	YDL060W	UBC9	P50623	157 aa	Predicted RBP	4.12	□□□□□ -1.75
TSR1	YDL060W	HOL1	P53389	586 aa		4.12	□□□□□ -1.75
TSR1	YDL060W	CTF4	Q01454	927 aa		4.12	□□□□□ -1.75
TSR1	YDL060W	YHM2	Q04013	314 aa		4.12	□□□□□ -1.75
TSR1	YDL060W	IRC3	Q06683	689 aa		4.12	□□□□□ -1.75
TSR1	YDL060W	YOR022C	Q12204	715 aa		4.12	□□□□□ -1.75
TSR1	YDL060W	RPS21B	Q3E754	87 aa	Known RBP	4.12	□□□□□ -1.75
TSR1	YDL060W	TRP4	P07285	380 aa	Predicted RBP	4.11	□□□□□ -1.75
TSR1	YDL060W	MET3	P08536	511 aa		4.11	□□□□□ -1.75
TSR1	YDL060W	HCA4	P20448	770 aa	Known RBP	4.11	□□□□□ -1.75
TSR1	YDL060W	ERG4	P25340	473 aa		4.11	□□□□□ -1.75
TSR1	YDL060W	MSH1	P25846	959 aa		4.11	□□□□□ -1.75
TSR1	YDL060W	VMA8	P32610	256 aa	Known RBP	4.11	□□□□□ -1.75
TSR1	YDL060W	ECM32	P32644	1121 aa	Known RBP	4.11	□□□□□ -1.75
TSR1	YDL060W	UPF3	P48412	387 aa	Known RBP	4.11	□□□□□ -1.75
TSR1	YDL060W	DUS1	P53759	423 aa	Known RBP	4.11	□□□□□ -1.75
TSR1	YDL060W	TEP1	P53916	434 aa		4.11	□□□□□ -1.75
TSR1	YDL060W	PKH1	Q03407	766 aa		4.11	□□□□□ -1.75
TSR1	YDL060W	SPN1	Q06505	410 aa	Predicted RBP	4.11	□□□□□ -1.75
TSR1	YDL060W	IMH1	Q06704	911 aa	Known RBP	4.11	□□□□□ -1.75
TSR1	YDL060W	TRM11	Q12463	433 aa		4.11	□□□□□ -1.75
TSR1	YDL060W	PSR1	Q07800	427 aa		4.11	□□□□□ -1.75
TSR1	YDL060W	RLP24	Q07915	199 aa	Known RBP	4.11	□□□□□ -1.75
TSR1	YDL060W	HFI1	Q12060	488 aa		4.11	□□□□□ -1.75
TSR1	YDL060W	ENT1	Q12518	454 aa		4.11	□□□□□ -1.75
TSR1	YDL060W	DNF2	Q12675	1612 aa		4.11	□□□□□ -1.75
TSR1	YDL060W	AAC3	P18238	307 aa		4.1	□□□□□ -1.75
TSR1	YDL060W	ATP12	P22135	325 aa		4.1	□□□□□ -1.75
TSR1	YDL060W	YKL050C	P35736	922 aa		4.1	□□□□□ -1.75
TSR1	YDL060W	VHR1	P40522	640 aa		4.1	□□□□□ -1.75
TSR1	YDL060W	ASK10	P48361	1146 aa		4.1	□□□□□ -1.75
TSR1	YDL060W	SSL2	Q00578	843 aa		4.1	□□□□□ -1.75
TSR1	YDL060W	PTA1	Q01329	785 aa	Predicted RBP	4.1	□□□□□ -1.75
TSR1	YDL060W	ERO1	Q03103	563 aa		4.1	□□□□□ -1.75
TSR1	YDL060W	HOT1	Q03213	719 aa		4.1	□□□□□ -1.75
TSR1	YDL060W	RPN7	Q06103	429 aa	Known RBP	4.1	□□□□□ -1.75
TSR1	YDL060W	HAL9	Q12180	1030 aa		4.1	□□□□□ -1.75
TSR1	YDL060W	HOP1	P20050	605 aa		4.1	□□□□□ -1.75
TSR1	YDL060W	PEX5	P35056	612 aa		4.1	□□□□□ -1.75
TSR1	YDL060W	OAF3	P36023	863 aa		4.1	□□□□□ -1.75
TSR1	YDL060W	FAT1	P38225	669 aa		4.1	□□□□□ -1.75
TSR1	YDL060W	UBS1	P38290	277 aa		4.1	□□□□□ -1.75
TSR1	YDL060W	RPN10	P38886	268 aa	Known RBP	4.1	□□□□□ -1.75
TSR1	YDL060W	SET5	P38890	526 aa	Known RBP	4.1	□□□□□ -1.75
TSR1	YDL060W	SSY5	P47002	699 aa		4.1	□□□□□ -1.75
TSR1	YDL060W	RNT1	Q02555	471 aa		4.1	□□□□□ -1.75
TSR1	YDL060W	YMR102C	Q03177	834 aa		4.1	□□□□□ -1.75
TSR1	YDL060W	DLT1	Q04216	342 aa		4.1	□□□□□ -1.75
TSR1	YDL060W	HLR1	Q04429	423 aa		4.1	□□□□□ -1.75
TSR1	YDL060W	LAS17	Q12446	633 aa		4.1	□□□□□ -1.75
TSR1	YDL060W	DIF1	O13577	133 aa		4.09	□□□□□ -1.75
TSR1	YDL060W	MRP7	P12687	371 aa		4.09	□□□□□ -1.75
TSR1	YDL060W	SPO16	P17122	198 aa		4.09	□□□□□ -1.75
TSR1	YDL060W	VPH1	P32563	840 aa	Known RBP	4.09	□□□□□ -1.75
TSR1	YDL060W	CTF13	P35203	478 aa		4.09	□□□□□ -1.75
TSR1	YDL060W	DHR2	P36009	735 aa	Predicted RBP	4.09	□□□□□ -1.75
TSR1	YDL060W	BNA2	P47125	453 aa		4.09	□□□□□ -1.75
TSR1	YDL060W	HXT16	P47185	567 aa		4.09	□□□□□ -1.75
TSR1	YDL060W	PCL10	P53124	433 aa		4.09	□□□□□ -1.75
TSR1	YDL060W	RCF1	Q03713	159 aa		4.09	□□□□□ -1.75
TSR1	YDL060W	LRS4	Q04087	347 aa	Known RBP	4.09	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 51.4 ms