RNA–Protein interactions for RNA: ENST00000617771.5

VEGFA-228, Transcript of vascular endothelial growth factor A, human

TSL 1 (best) BASIC

Gene VEGFA, Length 1,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-228	ENST00000617771	SUGT1	Q9Y2Z0	365 aa		31.34	■■■□□ 2.61
VEGFA-228	ENST00000617771	PRKG1	Q13976	671 aa		31.33	■■■□□ 2.61
VEGFA-228	ENST00000617771	SUPT20HL1	Q3ZLR7	823 aa		31.33	■■■□□ 2.61
VEGFA-228	ENST00000617771	SPDYE2	Q495Y8	402 aa		31.33	■■■□□ 2.61
VEGFA-228	ENST00000617771	MAST3	O60307	1309 aa		31.32	■■■□□ 2.6
VEGFA-228	ENST00000617771	AOX1	Q06278	1338 aa		31.32	■■■□□ 2.6
VEGFA-228	ENST00000617771	GRIK5	Q16478	980 aa		31.32	■■■□□ 2.6
VEGFA-228	ENST00000617771	GNL3L	Q9NVN8	582 aa	Known RBP	31.32	■■■□□ 2.6
VEGFA-228	ENST00000617771	SAGE1	Q9NXZ1	904 aa		31.32	■■■□□ 2.6
VEGFA-228	ENST00000617771	ZNF70	Q9UC06	446 aa	Predicted RBP	31.32	■■■□□ 2.6
VEGFA-228	ENST00000617771	WDR66	Q8TBY9	1149 aa		31.31	■■■□□ 2.6
VEGFA-228	ENST00000617771	TEKT1	Q969V4	418 aa		31.31	■■■□□ 2.6
VEGFA-228	ENST00000617771	CSRNP1	Q96S65	589 aa		31.31	■■■□□ 2.6
VEGFA-228	ENST00000617771	TDRD3	Q9H7E2	651 aa	Known RBP	31.31	■■■□□ 2.6
VEGFA-228	ENST00000617771	ANGEL1	Q9UNK9	670 aa	Known RBP	31.31	■■■□□ 2.6
VEGFA-228	ENST00000617771	PPP1R12B	O60237	982 aa	Predicted RBP	31.3	■■■□□ 2.6
VEGFA-228	ENST00000617771	CAPN15	O75808	1086 aa		31.3	■■■□□ 2.6
VEGFA-228	ENST00000617771	RASA3	Q14644	834 aa		31.3	■■■□□ 2.6
VEGFA-228	ENST00000617771	TMEM57	Q8N5G2	664 aa		31.3	■■■□□ 2.6
VEGFA-228	ENST00000617771	MRI	Q9BWK5	157 aa		31.29	■■■□□ 2.6
VEGFA-228	ENST00000617771	LDLRAD1	Q5T700	205 aa		31.28	■■■□□ 2.6
VEGFA-228	ENST00000617771	FTSJ3	Q8IY81	847 aa	Known RBP	31.28	■■■□□ 2.6
VEGFA-228	ENST00000617771	MAP3K11	Q16584	847 aa		31.27	■■■□□ 2.6
VEGFA-228	ENST00000617771	RNF186	Q9NXI6	227 aa		31.27	■■■□□ 2.6
VEGFA-228	ENST00000617771	SSC5D	A1L4H1	1573 aa		31.26	■■■□□ 2.6
VEGFA-228	ENST00000617771	TNNI2	P48788	182 aa		31.26	■■■□□ 2.59
VEGFA-228	ENST00000617771	NBPF12	Q5TAG4	269 aa	Predicted RBP	31.26	■■■□□ 2.59
VEGFA-228	ENST00000617771	AKAP2	Q9Y2D5	859 aa		31.26	■■■□□ 2.59
VEGFA-228	ENST00000617771	TRPA1	O75762	1119 aa		31.25	■■■□□ 2.59
VEGFA-228	ENST00000617771	ZDHHC15	Q96MV8	337 aa		31.25	■■■□□ 2.59
VEGFA-228	ENST00000617771	DENND2A	Q9ULE3	1009 aa		31.25	■■■□□ 2.59
VEGFA-228	ENST00000617771	FZD1	Q9UP38	647 aa		31.25	■■■□□ 2.59
VEGFA-228	ENST00000617771	UNCX	A6NJT0	531 aa		31.24	■■■□□ 2.59
VEGFA-228	ENST00000617771	TCP10L2	B9ZVM9	353 aa		31.24	■■■□□ 2.59
VEGFA-228	ENST00000617771	SEMA3E	O15041	775 aa		31.24	■■■□□ 2.59
VEGFA-228	ENST00000617771	MYH13	Q9UKX3	1938 aa		31.24	■■■□□ 2.59
VEGFA-228	ENST00000617771	PHKA1	P46020	1223 aa		31.23	■■■□□ 2.59
VEGFA-228	ENST00000617771	IREB2	P48200	963 aa	Known RBP	31.23	■■■□□ 2.59
VEGFA-228	ENST00000617771	HHIPL2	Q6UWX4	724 aa		31.23	■■■□□ 2.59
VEGFA-228	ENST00000617771	TMOD2	Q9NZR1	351 aa		31.23	■■■□□ 2.59
VEGFA-228	ENST00000617771	TFCP2	Q12800	502 aa		31.22	■■■□□ 2.59
VEGFA-228	ENST00000617771	SLC10A4	Q96EP9	437 aa		31.22	■■■□□ 2.59
VEGFA-228	ENST00000617771	ZBTB22	O15209	634 aa		31.21	■■■□□ 2.59
VEGFA-228	ENST00000617771	ADORA1	P30542	326 aa		31.21	■■■□□ 2.59
VEGFA-228	ENST00000617771	TIMM10	P62072	90 aa		31.21	■■■□□ 2.59
VEGFA-228	ENST00000617771	MKRN3	Q13064	507 aa	Known RBP	31.21	■■■□□ 2.59
VEGFA-228	ENST00000617771	CCDC102B	Q68D86	513 aa		31.21	■■■□□ 2.59
VEGFA-228	ENST00000617771	AKAP11	Q9UKA4	1901 aa		31.21	■■■□□ 2.59
VEGFA-228	ENST00000617771	PNMA6E	A0A0J9YXQ4	647 aa		31.2	■■■□□ 2.59
VEGFA-228	ENST00000617771		A0A1B0GUL7	405 aa		31.2	■■■□□ 2.59
VEGFA-228	ENST00000617771	SREBF2	Q12772	1141 aa		31.2	■■■□□ 2.59
VEGFA-228	ENST00000617771	G3BP1	Q13283	466 aa	Known RBP eCLIP	31.2	■■■□□ 2.59
VEGFA-228	ENST00000617771	ITPRIP	Q8IWB1	547 aa		31.2	■■■□□ 2.59
VEGFA-228	ENST00000617771	SALL1	Q9NSC2	1324 aa		31.2	■■■□□ 2.58
VEGFA-228	ENST00000617771	LDHB	P07195	334 aa	Known RBP	31.19	■■■□□ 2.58
VEGFA-228	ENST00000617771	SPRYD7	Q5W111	196 aa		31.19	■■■□□ 2.58
VEGFA-228	ENST00000617771	APOBEC3H	Q6NTF7	200 aa	Known RBP	31.19	■■■□□ 2.58
VEGFA-228	ENST00000617771	TMEM39B	Q9GZU3	492 aa		31.19	■■■□□ 2.58
VEGFA-228	ENST00000617771	USP2	O75604	605 aa	Predicted RBP	31.18	■■■□□ 2.58
VEGFA-228	ENST00000617771	TM4SF4	P48230	202 aa		31.18	■■■□□ 2.58
VEGFA-228	ENST00000617771	MVP	Q14764	893 aa	Known RBP	31.18	■■■□□ 2.58
VEGFA-228	ENST00000617771	ZGPAT	Q8N5A5	531 aa	Known RBP	31.18	■■■□□ 2.58
VEGFA-228	ENST00000617771	TEPSIN	Q96N21	525 aa		31.18	■■■□□ 2.58
VEGFA-228	ENST00000617771	PRDX5	P30044	214 aa		31.17	■■■□□ 2.58
VEGFA-228	ENST00000617771	FKBP1C	Q5VVH2	108 aa		31.17	■■■□□ 2.58
VEGFA-228	ENST00000617771	ANKRD13A	Q8IZ07	590 aa		31.17	■■■□□ 2.58
VEGFA-228	ENST00000617771	XAGE2	Q96GT9	111 aa		31.17	■■■□□ 2.58
VEGFA-228	ENST00000617771	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	31.17	■■■□□ 2.58
VEGFA-228	ENST00000617771	CACNB3	P54284	484 aa		31.16	■■■□□ 2.58
VEGFA-228	ENST00000617771	FAM83A	Q86UY5	434 aa		31.16	■■■□□ 2.58
VEGFA-228	ENST00000617771	CLMN	Q96JQ2	1002 aa		31.16	■■■□□ 2.58
VEGFA-228	ENST00000617771	ZBTB48	P10074	688 aa	Predicted RBP	31.15	■■■□□ 2.58
VEGFA-228	ENST00000617771	RLBP1	P12271	317 aa		31.15	■■■□□ 2.58
VEGFA-228	ENST00000617771	ABHD8	Q96I13	439 aa		31.15	■■■□□ 2.58
VEGFA-228	ENST00000617771	NEUROD6	Q96NK8	337 aa		31.15	■■■□□ 2.58
VEGFA-228	ENST00000617771	PDS5A	Q29RF7	1337 aa	Known RBP	31.15	■■■□□ 2.58
VEGFA-228	ENST00000617771	POLA2	Q14181	598 aa		31.14	■■■□□ 2.58
VEGFA-228	ENST00000617771	WNK4	Q96J92	1243 aa		31.14	■■■□□ 2.58
VEGFA-228	ENST00000617771	DAGLA	Q9Y4D2	1042 aa		31.14	■■■□□ 2.58
VEGFA-228	ENST00000617771	MANSC4	A6NHS7	340 aa	Predicted RBP	31.13	■■■□□ 2.57
VEGFA-228	ENST00000617771	ZBTB7B	O15156	539 aa	Predicted RBP	31.13	■■■□□ 2.57
VEGFA-228	ENST00000617771	ATP8B2	P98198	1209 aa		31.13	■■■□□ 2.57
VEGFA-228	ENST00000617771	RASGRF1	Q13972	1273 aa		31.13	■■■□□ 2.57
VEGFA-228	ENST00000617771	DIXDC1	Q155Q3	683 aa		31.13	■■■□□ 2.57
VEGFA-228	ENST00000617771	GORAB	Q5T7V8	394 aa		31.13	■■■□□ 2.57
VEGFA-228	ENST00000617771	CDAN1	Q8IWY9	1227 aa		31.13	■■■□□ 2.57
VEGFA-228	ENST00000617771	CASP8AP2	Q9UKL3	1982 aa		31.12	■■■□□ 2.57
VEGFA-228	ENST00000617771	INHBE	P58166	350 aa		31.12	■■■□□ 2.57
VEGFA-228	ENST00000617771	SSH3	Q8TE77	659 aa		31.12	■■■□□ 2.57
VEGFA-228	ENST00000617771	HOOK2	Q96ED9	719 aa		31.12	■■■□□ 2.57
VEGFA-228	ENST00000617771	C1orf115	Q9H7X2	142 aa		31.12	■■■□□ 2.57
VEGFA-228	ENST00000617771	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	31.11	■■■□□ 2.57
VEGFA-228	ENST00000617771	MS4A1	P11836	297 aa		31.1	■■■□□ 2.57
VEGFA-228	ENST00000617771	OS9	Q13438	667 aa	Predicted RBP	31.1	■■■□□ 2.57
VEGFA-228	ENST00000617771	DGKZ	Q13574	1117 aa		31.1	■■■□□ 2.57
VEGFA-228	ENST00000617771	SPTY2D1	Q68D10	685 aa	Predicted RBP	31.1	■■■□□ 2.57
VEGFA-228	ENST00000617771	MCOLN1	Q9GZU1	580 aa		31.1	■■■□□ 2.57
VEGFA-228	ENST00000617771	RPAP1	Q9BWH6	1393 aa	Predicted RBP	31.09	■■■□□ 2.57
VEGFA-228	ENST00000617771	ABCF2	Q9UG63	623 aa		31.09	■■■□□ 2.57
VEGFA-228	ENST00000617771	TBC1D8	O95759	1140 aa		31.08	■■■□□ 2.57

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