RNA–Protein interactions for RNA: ENST00000611659.4

TPM3-223, Transcript of tropomyosin 3, human

TSL 3 BASIC

Gene TPM3, Length 3,149 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM3-223	ENST00000611659	FBXO18	Q8NFZ0	1043 aa		13.77	□□□□□ -0.21
TPM3-223	ENST00000611659	PARD6B	Q9BYG5	372 aa		13.77	□□□□□ -0.21
TPM3-223	ENST00000611659	MROH7-TTC4	A0A0A0MT08	1334 aa		13.76	□□□□□ -0.21
TPM3-223	ENST00000611659	KARS	Q15046	597 aa	Known RBP	13.76	□□□□□ -0.21
TPM3-223	ENST00000611659	ESCO1	Q5FWF5	840 aa		13.76	□□□□□ -0.21
TPM3-223	ENST00000611659	OLFM4	Q6UX06	510 aa		13.76	□□□□□ -0.21
TPM3-223	ENST00000611659	C10orf67	Q8IYJ2	551 aa		13.76	□□□□□ -0.21
TPM3-223	ENST00000611659	DSCC1	Q9BVC3	393 aa		13.76	□□□□□ -0.21
TPM3-223	ENST00000611659	TSPYL1	Q9H0U9	437 aa		13.76	□□□□□ -0.21
TPM3-223	ENST00000611659	SH3TC1	Q8TE82	1336 aa		13.76	□□□□□ -0.21
TPM3-223	ENST00000611659	PLEKHG1	Q9ULL1	1385 aa		13.76	□□□□□ -0.21
TPM3-223	ENST00000611659	VSTM4	Q8IW00	320 aa		13.76	□□□□□ -0.21
TPM3-223	ENST00000611659	GPR161	Q8N6U8	529 aa	Known RBP	13.76	□□□□□ -0.21
TPM3-223	ENST00000611659	BAG1	Q99933	345 aa	Predicted RBP	13.76	□□□□□ -0.21
TPM3-223	ENST00000611659	AGXT2	Q9BYV1	514 aa		13.76	□□□□□ -0.21
TPM3-223	ENST00000611659	RGPD8	O14715	1765 aa	Predicted RBP	13.76	□□□□□ -0.21
TPM3-223	ENST00000611659	ARHGAP6	O43182	974 aa		13.75	□□□□□ -0.21
TPM3-223	ENST00000611659	CMA1	P23946	247 aa		13.75	□□□□□ -0.21
TPM3-223	ENST00000611659	RFX5	P48382	616 aa	Predicted RBP	13.75	□□□□□ -0.21
TPM3-223	ENST00000611659	ADK	P55263	362 aa	Known RBP	13.75	□□□□□ -0.21
TPM3-223	ENST00000611659	AMOT	Q4VCS5	1084 aa		13.75	□□□□□ -0.21
TPM3-223	ENST00000611659	MPHOSPH8	Q99549	860 aa		13.75	□□□□□ -0.21
TPM3-223	ENST00000611659	DESI2	Q9BSY9	194 aa		13.75	□□□□□ -0.21
TPM3-223	ENST00000611659	HELLS	Q9NRZ9	838 aa		13.75	□□□□□ -0.21
TPM3-223	ENST00000611659		A0A087WZG4	1122 aa		13.75	□□□□□ -0.21
TPM3-223	ENST00000611659	SLC20A2	Q08357	652 aa		13.75	□□□□□ -0.21
TPM3-223	ENST00000611659	AXDND1	Q5T1B0	1012 aa	Predicted RBP	13.75	□□□□□ -0.21
TPM3-223	ENST00000611659	IPO4	Q8TEX9	1081 aa	Known RBP	13.75	□□□□□ -0.21
TPM3-223	ENST00000611659	AK7	Q96M32	723 aa		13.75	□□□□□ -0.21
TPM3-223	ENST00000611659	METTL22	Q9BUU2	404 aa	Predicted RBP	13.75	□□□□□ -0.21
TPM3-223	ENST00000611659	ANKRD13D	Q6ZTN6	518 aa		13.75	□□□□□ -0.21
TPM3-223	ENST00000611659	TOGARAM2	Q6ZUX3	1019 aa		13.75	□□□□□ -0.21
TPM3-223	ENST00000611659	BRAP	Q7Z569	592 aa		13.75	□□□□□ -0.21
TPM3-223	ENST00000611659	CHMP4C	Q96CF2	233 aa		13.75	□□□□□ -0.21
TPM3-223	ENST00000611659	TRIM66	O15016	1216 aa		13.74	□□□□□ -0.21
TPM3-223	ENST00000611659	ATP8B1	O43520	1251 aa		13.74	□□□□□ -0.21
TPM3-223	ENST00000611659	DHX16	O60231	1041 aa	Known RBP	13.74	□□□□□ -0.21
TPM3-223	ENST00000611659	LMBR1L	Q6UX01	489 aa		13.74	□□□□□ -0.21
TPM3-223	ENST00000611659	CCDC12	Q8WUD4	166 aa	Predicted RBP	13.74	□□□□□ -0.21
TPM3-223	ENST00000611659	DHX58	Q96C10	678 aa		13.74	□□□□□ -0.21
TPM3-223	ENST00000611659	AIFM3	Q96NN9	605 aa		13.74	□□□□□ -0.21
TPM3-223	ENST00000611659	TBX22	Q9Y458	520 aa		13.74	□□□□□ -0.21
TPM3-223	ENST00000611659	MAST3	O60307	1309 aa		13.74	□□□□□ -0.21
TPM3-223	ENST00000611659	PRC1	O43663	620 aa		13.74	□□□□□ -0.21
TPM3-223	ENST00000611659	MAP3K9	P80192	1104 aa		13.74	□□□□□ -0.21
TPM3-223	ENST00000611659	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.74	□□□□□ -0.21
TPM3-223	ENST00000611659	MCM6	Q14566	821 aa		13.74	□□□□□ -0.21
TPM3-223	ENST00000611659	WASHC4	Q2M389	1173 aa		13.74	□□□□□ -0.21
TPM3-223	ENST00000611659	HSP90AB3P	Q58FF7	597 aa		13.74	□□□□□ -0.21
TPM3-223	ENST00000611659	CLIC6	Q96NY7	704 aa		13.74	□□□□□ -0.21
TPM3-223	ENST00000611659	DIP2A	Q14689	1571 aa		13.73	□□□□□ -0.21
TPM3-223	ENST00000611659	ZMYM1	Q5SVZ6	1142 aa		13.73	□□□□□ -0.21
TPM3-223	ENST00000611659	PXDN	Q92626	1479 aa		13.73	□□□□□ -0.21
TPM3-223	ENST00000611659	LCMT1	Q9UIC8	334 aa		13.73	□□□□□ -0.21
TPM3-223	ENST00000611659	ADAM21	Q9UKJ8	722 aa		13.73	□□□□□ -0.21
TPM3-223	ENST00000611659	PHF8	Q9UPP1	1060 aa		13.73	□□□□□ -0.21
TPM3-223	ENST00000611659	MRFAP1	Q9Y605	127 aa		13.73	□□□□□ -0.21
TPM3-223	ENST00000611659	MED1	Q15648	1581 aa	Predicted RBP	13.73	□□□□□ -0.21
TPM3-223	ENST00000611659	ANKAR	Q7Z5J8	1434 aa		13.73	□□□□□ -0.21
TPM3-223	ENST00000611659		M0R2C6	588 aa		13.73	□□□□□ -0.21
TPM3-223	ENST00000611659	KIF23	Q02241	960 aa	Predicted RBP	13.73	□□□□□ -0.21
TPM3-223	ENST00000611659	GOLGA1	Q92805	767 aa		13.73	□□□□□ -0.21
TPM3-223	ENST00000611659	FUT8	Q9BYC5	575 aa		13.73	□□□□□ -0.21
TPM3-223	ENST00000611659	IRX2	Q9BZI1	471 aa	Predicted RBP	13.73	□□□□□ -0.21
TPM3-223	ENST00000611659	RASSF4	Q9H2L5	321 aa		13.73	□□□□□ -0.21
TPM3-223	ENST00000611659	PUF60	Q9UHX1	559 aa	Known RBP	13.73	□□□□□ -0.21
TPM3-223	ENST00000611659	KDM3B	Q7LBC6	1761 aa		13.73	□□□□□ -0.21
TPM3-223	ENST00000611659	SLIT1	O75093	1534 aa		13.73	□□□□□ -0.21
TPM3-223	ENST00000611659	IFIT1	P09914	478 aa	Known RBP	13.73	□□□□□ -0.21
TPM3-223	ENST00000611659	RXRA	P19793	462 aa		13.73	□□□□□ -0.21
TPM3-223	ENST00000611659	LONRF2	Q1L5Z9	754 aa		13.73	□□□□□ -0.21
TPM3-223	ENST00000611659	SPECC1	Q5M775	1068 aa		13.73	□□□□□ -0.21
TPM3-223	ENST00000611659	STK11IP	Q8N1F8	1099 aa		13.73	□□□□□ -0.21
TPM3-223	ENST00000611659	NFATC2IP	Q8NCF5	419 aa		13.73	□□□□□ -0.21
TPM3-223	ENST00000611659	CNNM3	Q8NE01	707 aa		13.73	□□□□□ -0.21
TPM3-223	ENST00000611659	RSPH14	Q9UHP6	348 aa		13.73	□□□□□ -0.21
TPM3-223	ENST00000611659	RFX7	Q2KHR2	1363 aa		13.72	□□□□□ -0.21
TPM3-223	ENST00000611659	TMEM139	Q8IV31	216 aa		13.72	□□□□□ -0.21
TPM3-223	ENST00000611659	LZTFL1	Q9NQ48	299 aa		13.72	□□□□□ -0.21
TPM3-223	ENST00000611659	CWC15	Q9P013	229 aa	Known RBP	13.72	□□□□□ -0.21
TPM3-223	ENST00000611659		H3BQF6	201 aa		13.72	□□□□□ -0.21
TPM3-223	ENST00000611659	SLC39A14	Q15043	492 aa		13.72	□□□□□ -0.21
TPM3-223	ENST00000611659	MUM1L1	Q5H9M0	696 aa		13.72	□□□□□ -0.21
TPM3-223	ENST00000611659	SHC4	Q6S5L8	630 aa		13.72	□□□□□ -0.21
TPM3-223	ENST00000611659	RALYL	Q86SE5	291 aa	Known RBP	13.72	□□□□□ -0.21
TPM3-223	ENST00000611659	FCHSD1	Q86WN1	690 aa		13.72	□□□□□ -0.21
TPM3-223	ENST00000611659	THEMIS	Q8N1K5	641 aa	Predicted RBP	13.72	□□□□□ -0.21
TPM3-223	ENST00000611659	UBXN6	Q9BZV1	441 aa		13.72	□□□□□ -0.21
TPM3-223	ENST00000611659	INTS13	Q9NVM9	706 aa		13.72	□□□□□ -0.21
TPM3-223	ENST00000611659	VPS18	Q9P253	973 aa		13.72	□□□□□ -0.21
TPM3-223	ENST00000611659	TUBE1	Q9UJT0	475 aa		13.72	□□□□□ -0.21
TPM3-223	ENST00000611659	ABCC6	O95255	1503 aa		13.72	□□□□□ -0.21
TPM3-223	ENST00000611659	MYO1C	O00159	1063 aa		13.71	□□□□□ -0.21
TPM3-223	ENST00000611659	RNF113A	O15541	343 aa	Known RBP	13.71	□□□□□ -0.21
TPM3-223	ENST00000611659	IMMT	Q16891	758 aa	Known RBP	13.71	□□□□□ -0.21
TPM3-223	ENST00000611659	ZNF790	Q6PG37	636 aa		13.71	□□□□□ -0.21
TPM3-223	ENST00000611659	RABGGTA	Q92696	567 aa		13.71	□□□□□ -0.21
TPM3-223	ENST00000611659	PCDHA5	Q9Y5H7	936 aa		13.71	□□□□□ -0.21
TPM3-223	ENST00000611659	MYH15	Q9Y2K3	1946 aa		13.71	□□□□□ -0.21
TPM3-223	ENST00000611659	GOLGA6L9	A6NEM1	432 aa		13.71	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 1628.6 ms