RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 HIBADHP31937 336 aaKnown RBP8.49□□□□□ -1.05
VPS53-213ENST00000572334 SLFN5Q08AF3 891 aa8.49□□□□□ -1.05
VPS53-213ENST00000572334 TAF7LQ5H9L4 462 aa8.49□□□□□ -1.05
VPS53-213ENST00000572334 TRMT2AQ8IZ69 625 aaKnown RBP8.49□□□□□ -1.05
VPS53-213ENST00000572334 PTPN18Q99952 460 aa8.49□□□□□ -1.05
VPS53-213ENST00000572334 TDRD3Q9H7E2 651 aaKnown RBP8.49□□□□□ -1.05
VPS53-213ENST00000572334 VEZTQ9HBM0 779 aa8.49□□□□□ -1.05
VPS53-213ENST00000572334 ZNF70Q9UC06 446 aaPredicted RBP8.49□□□□□ -1.05
VPS53-213ENST00000572334 TTF2Q9UNY4 1162 aaKnown RBP8.49□□□□□ -1.05
VPS53-213ENST00000572334 IQSEC3Q9UPP2 1182 aaPredicted RBP8.49□□□□□ -1.05
VPS53-213ENST00000572334 MYH2Q9UKX2 1941 aa8.48□□□□□ -1.05
VPS53-213ENST00000572334 TESPA1A2RU30 521 aaPredicted RBP8.48□□□□□ -1.05
VPS53-213ENST00000572334 MANSC4A6NHS7 340 aaPredicted RBP8.48□□□□□ -1.05
VPS53-213ENST00000572334 UNCXA6NJT0 531 aa8.48□□□□□ -1.05
VPS53-213ENST00000572334 ZBTB48P10074 688 aaPredicted RBP8.48□□□□□ -1.05
VPS53-213ENST00000572334 CRKP46108 304 aa8.48□□□□□ -1.05
VPS53-213ENST00000572334 SREBF2Q12772 1141 aa8.48□□□□□ -1.05
VPS53-213ENST00000572334 IFNL1Q8IU54 200 aa8.48□□□□□ -1.05
VPS53-213ENST00000572334 DZIP1LQ8IYY4 767 aaKnown RBP8.48□□□□□ -1.05
VPS53-213ENST00000572334 SLC10A4Q96EP9 437 aa8.48□□□□□ -1.05
VPS53-213ENST00000572334 CDCA7LQ96GN5 454 aa8.48□□□□□ -1.05
VPS53-213ENST00000572334 SERPINA10Q9UK55 444 aa8.48□□□□□ -1.05
VPS53-213ENST00000572334 PTPRCP08575 1304 aa8.48□□□□□ -1.05
VPS53-213ENST00000572334 MROH5Q6ZUA9 1318 aa8.48□□□□□ -1.05
VPS53-213ENST00000572334 PPP1R12BO60237 982 aaPredicted RBP8.47□□□□□ -1.05
VPS53-213ENST00000572334 FKTNO75072 461 aa8.47□□□□□ -1.05
VPS53-213ENST00000572334 PDE8BO95263 885 aa8.47□□□□□ -1.05
VPS53-213ENST00000572334 BCAMP50895 628 aa8.47□□□□□ -1.05
VPS53-213ENST00000572334 PKN2Q16513 984 aaKnown RBP8.47□□□□□ -1.05
VPS53-213ENST00000572334 SUPT20HL1Q3ZLR7 823 aa8.47□□□□□ -1.05
VPS53-213ENST00000572334 FBXO46Q6PJ61 603 aaPredicted RBP8.47□□□□□ -1.05
VPS53-213ENST00000572334 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.47□□□□□ -1.05
VPS53-213ENST00000572334 ATG9AQ7Z3C6 839 aa8.47□□□□□ -1.05
VPS53-213ENST00000572334 MS4A4AQ96JQ5 239 aa8.47□□□□□ -1.05
VPS53-213ENST00000572334 TMEM39BQ9GZU3 492 aa8.47□□□□□ -1.05
VPS53-213ENST00000572334 PTPRFP10586 1907 aa8.46□□□□□ -1.05
VPS53-213ENST00000572334 TCP10L2B9ZVM9 353 aa8.46□□□□□ -1.06
VPS53-213ENST00000572334 E9PSI1 815 aa8.46□□□□□ -1.06
VPS53-213ENST00000572334 MYO1BO43795 1136 aa8.46□□□□□ -1.06
VPS53-213ENST00000572334 RBM5P52756 815 aaKnown RBP eCLIP8.46□□□□□ -1.06
VPS53-213ENST00000572334 INHBEP58166 350 aa8.46□□□□□ -1.06
VPS53-213ENST00000572334 HDLBPQ00341 1268 aaKnown RBP8.46□□□□□ -1.06
VPS53-213ENST00000572334 METTL24Q5JXM2 366 aa8.46□□□□□ -1.06
VPS53-213ENST00000572334 APOBEC3HQ6NTF7 200 aaKnown RBP8.46□□□□□ -1.06
VPS53-213ENST00000572334 ANKRD13AQ8IZ07 590 aa8.46□□□□□ -1.06
VPS53-213ENST00000572334 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.46□□□□□ -1.06
VPS53-213ENST00000572334 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.46□□□□□ -1.06
VPS53-213ENST00000572334 KIF16BQ96L93 1317 aa8.46□□□□□ -1.06
VPS53-213ENST00000572334 PHIPQ8WWQ0 1821 aa8.45□□□□□ -1.06
VPS53-213ENST00000572334 EYA2O00167 538 aa8.45□□□□□ -1.06
VPS53-213ENST00000572334 ALDH1A1P00352 501 aa8.45□□□□□ -1.06
VPS53-213ENST00000572334 IREB2P48200 963 aaKnown RBP8.45□□□□□ -1.06
VPS53-213ENST00000572334 CACNB3P54284 484 aa8.45□□□□□ -1.06
VPS53-213ENST00000572334 CHAF1AQ13111 956 aaPredicted RBP8.45□□□□□ -1.06
VPS53-213ENST00000572334 CRHR2Q13324 411 aa8.45□□□□□ -1.06
VPS53-213ENST00000572334 VGLL4Q14135 290 aa8.45□□□□□ -1.06
VPS53-213ENST00000572334 ALDH1L2Q3SY69 923 aa8.45□□□□□ -1.06
VPS53-213ENST00000572334 OTOP1Q7RTM1 612 aa8.45□□□□□ -1.06
VPS53-213ENST00000572334 BRI3BPQ8WY22 251 aa8.45□□□□□ -1.06
VPS53-213ENST00000572334 OPTNQ96CV9 577 aa8.45□□□□□ -1.06
VPS53-213ENST00000572334 ZDHHC15Q96MV8 337 aa8.45□□□□□ -1.06
VPS53-213ENST00000572334 MRIQ9BWK5 157 aa8.45□□□□□ -1.06
VPS53-213ENST00000572334 ELP3Q9H9T3 547 aa8.45□□□□□ -1.06
VPS53-213ENST00000572334 DOCK3Q8IZD9 2030 aa8.45□□□□□ -1.06
VPS53-213ENST00000572334 DOCK2Q92608 1830 aa8.45□□□□□ -1.06
VPS53-213ENST00000572334 MGAMO43451 1857 aa8.45□□□□□ -1.06
VPS53-213ENST00000572334 TNFAIP1Q13829 316 aa8.44□□□□□ -1.06
VPS53-213ENST00000572334 ERICH6Q7L0X2 663 aa8.44□□□□□ -1.06
VPS53-213ENST00000572334 TBC1D22AQ8WUA7 517 aa8.44□□□□□ -1.06
VPS53-213ENST00000572334 MYO5AQ9Y4I1 1855 aaKnown RBP8.44□□□□□ -1.06
VPS53-213ENST00000572334 CEP290O15078 2479 aa8.44□□□□□ -1.06
VPS53-213ENST00000572334 POTEFA5A3E0 1075 aa8.43□□□□□ -1.06
VPS53-213ENST00000572334 MAP3K9P80192 1104 aa8.43□□□□□ -1.06
VPS53-213ENST00000572334 PUM3Q15397 648 aaKnown RBP8.43□□□□□ -1.06
VPS53-213ENST00000572334 CAVIN4Q5BKX8 364 aa8.43□□□□□ -1.06
VPS53-213ENST00000572334 FKBP1CQ5VVH2 108 aa8.43□□□□□ -1.06
VPS53-213ENST00000572334 HHIPL2Q6UWX4 724 aa8.43□□□□□ -1.06
VPS53-213ENST00000572334 FAM83AQ86UY5 434 aa8.43□□□□□ -1.06
VPS53-213ENST00000572334 FAM43AQ8N2R8 423 aa8.43□□□□□ -1.06
VPS53-213ENST00000572334 CD99L2Q8TCZ2 262 aa8.43□□□□□ -1.06
VPS53-213ENST00000572334 TEKT1Q969V4 418 aa8.43□□□□□ -1.06
VPS53-213ENST00000572334 SUGT1Q9Y2Z0 365 aa8.43□□□□□ -1.06
VPS53-213ENST00000572334 TRIM17Q9Y577 477 aa8.43□□□□□ -1.06
VPS53-213ENST00000572334 SNCAIPQ9Y6H5 919 aa8.43□□□□□ -1.06
VPS53-213ENST00000572334 RPAP1Q9BWH6 1393 aaPredicted RBP8.43□□□□□ -1.06
VPS53-213ENST00000572334 CDK5RAP2Q96SN8 1893 aa8.43□□□□□ -1.06
VPS53-213ENST00000572334 SPDYE5A6NIY4 337 aa8.42□□□□□ -1.06
VPS53-213ENST00000572334 ZBTB22O15209 634 aa8.42□□□□□ -1.06
VPS53-213ENST00000572334 IFIT1P09914 478 aaKnown RBP8.42□□□□□ -1.06
VPS53-213ENST00000572334 VPS37DQ86XT2 251 aa8.42□□□□□ -1.06
VPS53-213ENST00000572334 LPIN2Q92539 896 aa8.42□□□□□ -1.06
VPS53-213ENST00000572334 SMC4Q9NTJ3 1288 aa8.42□□□□□ -1.06
VPS53-213ENST00000572334 NOB1Q9ULX3 412 aaKnown RBP8.42□□□□□ -1.06
VPS53-213ENST00000572334 PA2G4Q9UQ80 394 aaKnown RBP8.42□□□□□ -1.06
VPS53-213ENST00000572334 PTPN22Q9Y2R2 807 aa8.42□□□□□ -1.06
VPS53-213ENST00000572334 DAGLAQ9Y4D2 1042 aa8.42□□□□□ -1.06
VPS53-213ENST00000572334 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.42□□□□□ -1.06
VPS53-213ENST00000572334 RFX7Q2KHR2 1363 aa8.41□□□□□ -1.06
VPS53-213ENST00000572334 ATRNL1Q5VV63 1379 aa8.41□□□□□ -1.06
VPS53-213ENST00000572334 CCL15-CCL14A0A0B4J2E2 113 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms