RNA–Protein interactions for RNA: ENST00000563404.1

HDGFL3-203, Transcript of HDGF like 3, humanhuman

TSL 5

Gene HDGFL3, Length 448 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-203ENST00000563404 KLHDC4Q8TBB5 520 aa21.18■□□□□ 0.98
HDGFL3-203ENST00000563404 OTOFQ9HC10 1997 aa21.17■□□□□ 0.98
HDGFL3-203ENST00000563404 CRKP46108 304 aa21.17■□□□□ 0.98
HDGFL3-203ENST00000563404 ANKRD13AQ8IZ07 590 aa21.17■□□□□ 0.98
HDGFL3-203ENST00000563404 PTPN18Q99952 460 aa21.17■□□□□ 0.98
HDGFL3-203ENST00000563404 TCP10L2B9ZVM9 353 aa21.16■□□□□ 0.98
HDGFL3-203ENST00000563404 CHAF1AQ13111 956 aaPredicted RBP21.16■□□□□ 0.98
HDGFL3-203ENST00000563404 METTL24Q5JXM2 366 aa21.16■□□□□ 0.98
HDGFL3-203ENST00000563404 TMEM39BQ9GZU3 492 aa21.16■□□□□ 0.98
HDGFL3-203ENST00000563404 ELP3Q9H9T3 547 aa21.16■□□□□ 0.98
HDGFL3-203ENST00000563404 TESPA1A2RU30 521 aaPredicted RBP21.15■□□□□ 0.98
HDGFL3-203ENST00000563404 TNFAIP1Q13829 316 aa21.15■□□□□ 0.98
HDGFL3-203ENST00000563404 SSH1Q8WYL5 1049 aa21.15■□□□□ 0.98
HDGFL3-203ENST00000563404 USP44Q9H0E7 712 aa21.15■□□□□ 0.98
HDGFL3-203ENST00000563404 PTPRCP08575 1304 aa21.14■□□□□ 0.97
HDGFL3-203ENST00000563404 PDE8BO95263 885 aa21.14■□□□□ 0.97
HDGFL3-203ENST00000563404 BCAMP50895 628 aa21.14■□□□□ 0.97
HDGFL3-203ENST00000563404 CRHR2Q13324 411 aa21.14■□□□□ 0.97
HDGFL3-203ENST00000563404 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.14■□□□□ 0.97
HDGFL3-203ENST00000563404 OTOP1Q7RTM1 612 aa21.14■□□□□ 0.97
HDGFL3-203ENST00000563404 CNKSR2Q8WXI2 1034 aa21.14■□□□□ 0.97
HDGFL3-203ENST00000563404 OPTNQ96CV9 577 aa21.14■□□□□ 0.97
HDGFL3-203ENST00000563404 CAP1Q01518 475 aa21.13■□□□□ 0.97
HDGFL3-203ENST00000563404 VPS37DQ86XT2 251 aa21.13■□□□□ 0.97
HDGFL3-203ENST00000563404 MS4A4AQ96JQ5 239 aa21.13■□□□□ 0.97
HDGFL3-203ENST00000563404 TRIM17Q9Y577 477 aa21.13■□□□□ 0.97
HDGFL3-203ENST00000563404 CACNB3P54284 484 aa21.12■□□□□ 0.97
HDGFL3-203ENST00000563404 FGFR2P21802 821 aa21.11■□□□□ 0.97
HDGFL3-203ENST00000563404 RFX5P48382 616 aaPredicted RBP21.11■□□□□ 0.97
HDGFL3-203ENST00000563404 HDLBPQ00341 1268 aaKnown RBP21.11■□□□□ 0.97
HDGFL3-203ENST00000563404 VGLL4Q14135 290 aa21.11■□□□□ 0.97
HDGFL3-203ENST00000563404 CAVIN4Q5BKX8 364 aa21.11■□□□□ 0.97
HDGFL3-203ENST00000563404 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.11■□□□□ 0.97
HDGFL3-203ENST00000563404 CD99L2Q8TCZ2 262 aa21.11■□□□□ 0.97
HDGFL3-203ENST00000563404 TBC1D22AQ8WUA7 517 aa21.11■□□□□ 0.97
HDGFL3-203ENST00000563404 CENPFP49454 3210 aa21.1■□□□□ 0.97
HDGFL3-203ENST00000563404 E9PSI1 815 aa21.1■□□□□ 0.97
HDGFL3-203ENST00000563404 SLFN5Q08AF3 891 aa21.1■□□□□ 0.97
HDGFL3-203ENST00000563404 FRAT2O75474 233 aaPredicted RBP21.09■□□□□ 0.97
HDGFL3-203ENST00000563404 TNNI2P48788 182 aa21.09■□□□□ 0.97
HDGFL3-203ENST00000563404 MAP3K9P80192 1104 aa21.09■□□□□ 0.97
HDGFL3-203ENST00000563404 OTUD7BQ6GQQ9 843 aa21.09■□□□□ 0.97
HDGFL3-203ENST00000563404 APOBEC3HQ6NTF7 200 aaKnown RBP21.09■□□□□ 0.97
HDGFL3-203ENST00000563404 BRI3BPQ8WY22 251 aa21.09■□□□□ 0.97
HDGFL3-203ENST00000563404 TEKT1Q969V4 418 aa21.09■□□□□ 0.97
HDGFL3-203ENST00000563404 PUM3Q15397 648 aaKnown RBP21.08■□□□□ 0.97
HDGFL3-203ENST00000563404 PRPF38BQ5VTL8 546 aaKnown RBP21.08■□□□□ 0.97
HDGFL3-203ENST00000563404 CDCA7LQ96GN5 454 aa21.08■□□□□ 0.97
HDGFL3-203ENST00000563404 ERO1AQ96HE7 468 aa21.08■□□□□ 0.97
HDGFL3-203ENST00000563404 ZDHHC15Q96MV8 337 aa21.08■□□□□ 0.97
HDGFL3-203ENST00000563404 MRIQ9BWK5 157 aa21.08■□□□□ 0.97
HDGFL3-203ENST00000563404 PTPN22Q9Y2R2 807 aa21.08■□□□□ 0.97
HDGFL3-203ENST00000563404 KIF16BQ96L93 1317 aa21.07■□□□□ 0.96
HDGFL3-203ENST00000563404 MKI67P46013 3256 aaKnown RBP21.07■□□□□ 0.96
HDGFL3-203ENST00000563404 POTEFA5A3E0 1075 aa21.06■□□□□ 0.96
HDGFL3-203ENST00000563404 EYA2O00167 538 aa21.06■□□□□ 0.96
HDGFL3-203ENST00000563404 IFIT1P09914 478 aaKnown RBP21.06■□□□□ 0.96
HDGFL3-203ENST00000563404 SP3Q02447 781 aa21.06■□□□□ 0.96
HDGFL3-203ENST00000563404 ATG9AQ7Z3C6 839 aa21.06■□□□□ 0.96
HDGFL3-203ENST00000563404 SNCAIPQ9Y6H5 919 aa21.06■□□□□ 0.96
HDGFL3-203ENST00000563404 BRCA2P51587 3418 aa21.06■□□□□ 0.96
HDGFL3-203ENST00000563404 CCL15-CCL14A0A0B4J2E2 113 aa21.05■□□□□ 0.96
HDGFL3-203ENST00000563404 CCL15Q16663 113 aa21.05■□□□□ 0.96
HDGFL3-203ENST00000563404 FAM43AQ8N2R8 423 aa21.05■□□□□ 0.96
HDGFL3-203ENST00000563404 OTUD5Q96G74 571 aa21.05■□□□□ 0.96
HDGFL3-203ENST00000563404 EFCC1Q9HA90 598 aa21.05■□□□□ 0.96
HDGFL3-203ENST00000563404 SUGT1Q9Y2Z0 365 aa21.05■□□□□ 0.96
HDGFL3-203ENST00000563404 CSADQ9Y600 493 aa21.05■□□□□ 0.96
HDGFL3-203ENST00000563404 GTF2A2P52657 109 aa21.04■□□□□ 0.96
HDGFL3-203ENST00000563404 ALDH1L2Q3SY69 923 aa21.04■□□□□ 0.96
HDGFL3-203ENST00000563404 FAM83AQ86UY5 434 aa21.04■□□□□ 0.96
HDGFL3-203ENST00000563404 SPDYE5A6NIY4 337 aa21.03■□□□□ 0.96
HDGFL3-203ENST00000563404 FKBP1CQ5VVH2 108 aa21.03■□□□□ 0.96
HDGFL3-203ENST00000563404 HHIPL2Q6UWX4 724 aa21.03■□□□□ 0.96
HDGFL3-203ENST00000563404 TRMT2AQ8IZ69 625 aaKnown RBP21.03■□□□□ 0.96
HDGFL3-203ENST00000563404 LPIN2Q92539 896 aa21.03■□□□□ 0.96
HDGFL3-203ENST00000563404 ZKSCAN4Q969J2 545 aaPredicted RBP21.03■□□□□ 0.96
HDGFL3-203ENST00000563404 MAST3O60307 1309 aa21.03■□□□□ 0.96
HDGFL3-203ENST00000563404 SLC5A1P13866 664 aa21.02■□□□□ 0.96
HDGFL3-203ENST00000563404 TAF1CQ15572 869 aaPredicted RBP21.02■□□□□ 0.96
HDGFL3-203ENST00000563404 ARMC5Q96C12 935 aa21.02■□□□□ 0.96
HDGFL3-203ENST00000563404 WRNIP1Q96S55 665 aa21.02■□□□□ 0.96
HDGFL3-203ENST00000563404 SMC4Q9NTJ3 1288 aa21.02■□□□□ 0.96
HDGFL3-203ENST00000563404 TMOD2Q9NZR1 351 aa21.02■□□□□ 0.96
HDGFL3-203ENST00000563404 INTS3Q68E01 1043 aaKnown RBP21.01■□□□□ 0.95
HDGFL3-203ENST00000563404 ZFYVE28Q9HCC9 887 aa21.01■□□□□ 0.95
HDGFL3-203ENST00000563404 RPAP1Q9BWH6 1393 aaPredicted RBP21■□□□□ 0.95
HDGFL3-203ENST00000563404 IRF6O14896 467 aa21■□□□□ 0.95
HDGFL3-203ENST00000563404 DIXDC1Q155Q3 683 aa21■□□□□ 0.95
HDGFL3-203ENST00000563404 MIGA2Q7L4E1 593 aa21■□□□□ 0.95
HDGFL3-203ENST00000563404 ERO1BQ86YB8 467 aa21■□□□□ 0.95
HDGFL3-203ENST00000563404 WDR66Q8TBY9 1149 aa21■□□□□ 0.95
HDGFL3-203ENST00000563404 SIL1Q9H173 461 aa21■□□□□ 0.95
HDGFL3-203ENST00000563404 DAGLAQ9Y4D2 1042 aa21■□□□□ 0.95
HDGFL3-203ENST00000563404 BTBD19C9JJ37 291 aa20.99■□□□□ 0.95
HDGFL3-203ENST00000563404 NOB1Q9ULX3 412 aaKnown RBP20.99■□□□□ 0.95
HDGFL3-203ENST00000563404 MYH13Q9UKX3 1938 aa20.98■□□□□ 0.95
HDGFL3-203ENST00000563404 CIAO1O76071 339 aa20.98■□□□□ 0.95
HDGFL3-203ENST00000563404 UBTFL1P0CB47 393 aaPredicted RBP20.98■□□□□ 0.95
HDGFL3-203ENST00000563404 PRDX5P30044 214 aa20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms