RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 PTPN12Q05209 780 aaKnown RBP15.41■□□□□ 0.06
CLK3-206ENST00000562078 FAM182BQ5T319 152 aa15.41■□□□□ 0.06
CLK3-206ENST00000562078 E4F1Q66K89 784 aaPredicted RBP15.41■□□□□ 0.06
CLK3-206ENST00000562078 IQUBQ8NA54 791 aa15.41■□□□□ 0.06
CLK3-206ENST00000562078 EXOC4Q96A65 974 aa15.41■□□□□ 0.06
CLK3-206ENST00000562078 SLC4A9Q96Q91 983 aa15.41■□□□□ 0.06
CLK3-206ENST00000562078 EIF3CQ99613 913 aaKnown RBP15.41■□□□□ 0.06
CLK3-206ENST00000562078 LSG1Q9H089 658 aaKnown RBP15.41■□□□□ 0.06
CLK3-206ENST00000562078 COPRSQ9NQ92 184 aa15.41■□□□□ 0.06
CLK3-206ENST00000562078 PPP1R13BQ96KQ4 1090 aa15.41■□□□□ 0.06
CLK3-206ENST00000562078 EPB41L2O43491 1005 aaKnown RBP15.4■□□□□ 0.06
CLK3-206ENST00000562078 DNAJC21Q5F1R6 531 aaKnown RBP15.4■□□□□ 0.06
CLK3-206ENST00000562078 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.4■□□□□ 0.06
CLK3-206ENST00000562078 SEPT12Q8IYM1 358 aa15.4■□□□□ 0.06
CLK3-206ENST00000562078 EVI5LQ96CN4 794 aa15.4■□□□□ 0.06
CLK3-206ENST00000562078 CWC25Q9NXE8 425 aaPredicted RBP15.4■□□□□ 0.06
CLK3-206ENST00000562078 CC2D1AQ6P1N0 951 aaPredicted RBP15.4■□□□□ 0.06
CLK3-206ENST00000562078 LMBR1LQ6UX01 489 aa15.4■□□□□ 0.06
CLK3-206ENST00000562078 FERMT3Q86UX7 667 aa15.4■□□□□ 0.06
CLK3-206ENST00000562078 CCDC83Q8IWF9 413 aa15.4■□□□□ 0.06
CLK3-206ENST00000562078 IL17RAQ96F46 866 aa15.4■□□□□ 0.06
CLK3-206ENST00000562078 MRFAP1L1Q96HT8 127 aa15.4■□□□□ 0.06
CLK3-206ENST00000562078 PALLDQ8WX93 1383 aa15.4■□□□□ 0.06
CLK3-206ENST00000562078 H3BQF6 201 aa15.39■□□□□ 0.05
CLK3-206ENST00000562078 CPA1P15085 419 aa15.39■□□□□ 0.05
CLK3-206ENST00000562078 RUFY2Q8WXA3 655 aa15.39■□□□□ 0.05
CLK3-206ENST00000562078 BOLA2Q9H3K6 86 aa15.39■□□□□ 0.05
CLK3-206ENST00000562078 KCND1Q9NSA2 647 aa15.39■□□□□ 0.05
CLK3-206ENST00000562078 DONSONQ9NYP3 566 aa15.39■□□□□ 0.05
CLK3-206ENST00000562078 NHSQ6T4R5 1651 aa15.39■□□□□ 0.05
CLK3-206ENST00000562078 ANKRD36CQ5JPF3 1778 aa15.39■□□□□ 0.05
CLK3-206ENST00000562078 BTAF1O14981 1849 aa15.39■□□□□ 0.05
CLK3-206ENST00000562078 PATL2C9JE40 543 aaKnown RBP15.39■□□□□ 0.05
CLK3-206ENST00000562078 GOLGA6L19H0YKK7 550 aa15.39■□□□□ 0.05
CLK3-206ENST00000562078 ATP6V1AP38606 617 aa15.39■□□□□ 0.05
CLK3-206ENST00000562078 TFCP2Q12800 502 aa15.39■□□□□ 0.05
CLK3-206ENST00000562078 TTC14Q96N46 770 aa15.39■□□□□ 0.05
CLK3-206ENST00000562078 PSD3Q9NYI0 1048 aa15.39■□□□□ 0.05
CLK3-206ENST00000562078 LIMCH1Q9UPQ0 1083 aa15.39■□□□□ 0.05
CLK3-206ENST00000562078 H7C1W4 665 aa15.38■□□□□ 0.05
CLK3-206ENST00000562078 ATP8B1O43520 1251 aa15.38■□□□□ 0.05
CLK3-206ENST00000562078 IQCB1Q15051 598 aa15.38■□□□□ 0.05
CLK3-206ENST00000562078 SARM1Q6SZW1 724 aa15.38■□□□□ 0.05
CLK3-206ENST00000562078 LEKR1Q6ZMV7 388 aa15.38■□□□□ 0.05
CLK3-206ENST00000562078 CCDC91Q7Z6B0 441 aa15.38■□□□□ 0.05
CLK3-206ENST00000562078 SMARCC1Q92922 1105 aaPredicted RBP15.38■□□□□ 0.05
CLK3-206ENST00000562078 CLSTN2Q9H4D0 955 aa15.38■□□□□ 0.05
CLK3-206ENST00000562078 NR1I2O75469 434 aa15.38■□□□□ 0.05
CLK3-206ENST00000562078 TADA3O75528 432 aa15.38■□□□□ 0.05
CLK3-206ENST00000562078 CYP19A1P11511 503 aaPredicted RBP15.38■□□□□ 0.05
CLK3-206ENST00000562078 FOXO4P98177 505 aa15.38■□□□□ 0.05
CLK3-206ENST00000562078 RBM43Q6ZSC3 357 aaKnown RBP15.38■□□□□ 0.05
CLK3-206ENST00000562078 C11orf57Q6ZUT1 292 aaPredicted RBP15.38■□□□□ 0.05
CLK3-206ENST00000562078 MNS1Q8NEH6 495 aa15.38■□□□□ 0.05
CLK3-206ENST00000562078 PDRG1Q9NUG6 133 aa15.38■□□□□ 0.05
CLK3-206ENST00000562078 SUFUQ9UMX1 484 aa15.38■□□□□ 0.05
CLK3-206ENST00000562078 SNX14Q9Y5W7 946 aa15.38■□□□□ 0.05
CLK3-206ENST00000562078 SBF2Q86WG5 1849 aa15.37■□□□□ 0.05
CLK3-206ENST00000562078 MYH3P11055 1940 aa15.37■□□□□ 0.05
CLK3-206ENST00000562078 LOC102724428A0A0B4J2F2 783 aa15.37■□□□□ 0.05
CLK3-206ENST00000562078 ONECUT3O60422 494 aaPredicted RBP15.37■□□□□ 0.05
CLK3-206ENST00000562078 GSCP56915 257 aaPredicted RBP15.37■□□□□ 0.05
CLK3-206ENST00000562078 SIK1P57059 783 aa15.37■□□□□ 0.05
CLK3-206ENST00000562078 KRT85P78386 507 aa15.37■□□□□ 0.05
CLK3-206ENST00000562078 TNNI3KQ59H18 835 aa15.37■□□□□ 0.05
CLK3-206ENST00000562078 DBNLQ9UJU6 430 aaKnown RBP15.37■□□□□ 0.05
CLK3-206ENST00000562078 FPGT-TNNI3KV9GXZ4 949 aa15.37■□□□□ 0.05
CLK3-206ENST00000562078 NUP98P52948 1817 aa15.37■□□□□ 0.05
CLK3-206ENST00000562078 BRWD3Q6RI45 1802 aa15.37■□□□□ 0.05
CLK3-206ENST00000562078 PTH1RQ03431 593 aa15.37■□□□□ 0.05
CLK3-206ENST00000562078 RASEFQ8IZ41 740 aa15.37■□□□□ 0.05
CLK3-206ENST00000562078 FAM212AQ96EL1 285 aa15.37■□□□□ 0.05
CLK3-206ENST00000562078 FAM227BQ96M60 508 aa15.37■□□□□ 0.05
CLK3-206ENST00000562078 FSD1Q9BTV5 496 aa15.37■□□□□ 0.05
CLK3-206ENST00000562078 CARD6Q9BX69 1037 aa15.37■□□□□ 0.05
CLK3-206ENST00000562078 DNAI1Q9UI46 699 aa15.37■□□□□ 0.05
CLK3-206ENST00000562078 GOLGA6L4A6NEF3 574 aa15.36■□□□□ 0.05
CLK3-206ENST00000562078 IVLP07476 585 aa15.36■□□□□ 0.05
CLK3-206ENST00000562078 KIF6Q6ZMV9 814 aa15.36■□□□□ 0.05
CLK3-206ENST00000562078 PPM1EQ8WY54 764 aa15.36■□□□□ 0.05
CLK3-206ENST00000562078 ZBTB1Q9Y2K1 713 aa15.36■□□□□ 0.05
CLK3-206ENST00000562078 A0A087WWV3 80 aa15.36■□□□□ 0.05
CLK3-206ENST00000562078 NMIQ13287 307 aaPredicted RBP15.36■□□□□ 0.05
CLK3-206ENST00000562078 MCTP2Q6DN12 878 aa15.36■□□□□ 0.05
CLK3-206ENST00000562078 SUGP1Q8IWZ8 645 aaKnown RBP15.36■□□□□ 0.05
CLK3-206ENST00000562078 TFIP11Q9UBB9 837 aaKnown RBP15.36■□□□□ 0.05
CLK3-206ENST00000562078 FANCGO15287 622 aa15.35■□□□□ 0.05
CLK3-206ENST00000562078 EVCP57679 992 aa15.35■□□□□ 0.05
CLK3-206ENST00000562078 CCDC158Q5M9N0 1113 aa15.35■□□□□ 0.05
CLK3-206ENST00000562078 HOMER1Q86YM7 354 aa15.35■□□□□ 0.05
CLK3-206ENST00000562078 EDC3Q96F86 508 aaKnown RBP15.35■□□□□ 0.05
CLK3-206ENST00000562078 FUT8Q9BYC5 575 aa15.35■□□□□ 0.05
CLK3-206ENST00000562078 DDX19AQ9NUU7 478 aaKnown RBP15.35■□□□□ 0.05
CLK3-206ENST00000562078 CICQ96RK0 1608 aaPredicted RBP15.35■□□□□ 0.05
CLK3-206ENST00000562078 ZNF772Q68DY9 489 aaPredicted RBP15.35■□□□□ 0.05
CLK3-206ENST00000562078 CDC37L1Q7L3B6 337 aa15.35■□□□□ 0.05
CLK3-206ENST00000562078 PTF1AQ7RTS3 328 aa15.35■□□□□ 0.05
CLK3-206ENST00000562078 ZSCAN16Q9H4T2 348 aaPredicted RBP15.35■□□□□ 0.05
CLK3-206ENST00000562078 A0A0D9SFI3 127 aa15.34■□□□□ 0.05
CLK3-206ENST00000562078 HIP1O00291 1037 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms