RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 SPDYE6P0CI01 402 aa14.57□□□□□ -0.08
LDLR-212ENST00000560467 MAP3K11Q16584 847 aa14.57□□□□□ -0.08
LDLR-212ENST00000560467 CFAP100Q494V2 611 aa14.57□□□□□ -0.08
LDLR-212ENST00000560467 MTMR14Q8NCE2 650 aa14.57□□□□□ -0.08
LDLR-212ENST00000560467 MEIS3Q99687 375 aa14.57□□□□□ -0.08
LDLR-212ENST00000560467 USP44Q9H0E7 712 aa14.57□□□□□ -0.08
LDLR-212ENST00000560467 VEZTQ9HBM0 779 aa14.57□□□□□ -0.08
LDLR-212ENST00000560467 CHMP3Q9Y3E7 222 aa14.57□□□□□ -0.08
LDLR-212ENST00000560467 TRIM17Q9Y577 477 aa14.57□□□□□ -0.08
LDLR-212ENST00000560467 HTTP42858 3142 aa14.57□□□□□ -0.08
LDLR-212ENST00000560467 ALDH1A1P00352 501 aa14.56□□□□□ -0.08
LDLR-212ENST00000560467 GJA5P36382 358 aa14.56□□□□□ -0.08
LDLR-212ENST00000560467 FOXO4P98177 505 aa14.56□□□□□ -0.08
LDLR-212ENST00000560467 NBPF12Q5TAG4 269 aaPredicted RBP14.56□□□□□ -0.08
LDLR-212ENST00000560467 C15orf52Q6ZUT6 534 aaKnown RBP14.56□□□□□ -0.08
LDLR-212ENST00000560467 OTOP1Q7RTM1 612 aa14.56□□□□□ -0.08
LDLR-212ENST00000560467 PRMT6Q96LA8 375 aaPredicted RBP14.56□□□□□ -0.08
LDLR-212ENST00000560467 PPP1R12BO60237 982 aaPredicted RBP14.55□□□□□ -0.08
LDLR-212ENST00000560467 ZBTB48P10074 688 aaPredicted RBP14.55□□□□□ -0.08
LDLR-212ENST00000560467 IL1R1P14778 569 aa14.55□□□□□ -0.08
LDLR-212ENST00000560467 IFIT5Q13325 482 aaKnown RBP14.55□□□□□ -0.08
LDLR-212ENST00000560467 HDAC1Q13547 482 aaPredicted RBP14.55□□□□□ -0.08
LDLR-212ENST00000560467 EPHA10Q5JZY3 1008 aa14.55□□□□□ -0.08
LDLR-212ENST00000560467 ZNF804AQ7Z570 1209 aa14.55□□□□□ -0.08
LDLR-212ENST00000560467 ZNF594Q96JF6 807 aaPredicted RBP14.55□□□□□ -0.08
LDLR-212ENST00000560467 PPP2R3BQ9Y5P8 575 aa14.55□□□□□ -0.08
LDLR-212ENST00000560467 MYH3P11055 1940 aa14.54□□□□□ -0.08
LDLR-212ENST00000560467 POTEFA5A3E0 1075 aa14.54□□□□□ -0.08
LDLR-212ENST00000560467 CRHR2Q13324 411 aa14.54□□□□□ -0.08
LDLR-212ENST00000560467 C1orf115Q9H7X2 142 aa14.54□□□□□ -0.08
LDLR-212ENST00000560467 MYO1BO43795 1136 aa14.53□□□□□ -0.08
LDLR-212ENST00000560467 RBM5P52756 815 aaKnown RBP eCLIP14.53□□□□□ -0.08
LDLR-212ENST00000560467 INHBEP58166 350 aa14.53□□□□□ -0.08
LDLR-212ENST00000560467 CAP1Q01518 475 aa14.53□□□□□ -0.08
LDLR-212ENST00000560467 RASA3Q14644 834 aa14.53□□□□□ -0.08
LDLR-212ENST00000560467 SUPT20HL1Q3ZLR7 823 aa14.53□□□□□ -0.08
LDLR-212ENST00000560467 LMBR1LQ6UX01 489 aa14.53□□□□□ -0.08
LDLR-212ENST00000560467 CDAN1Q8IWY9 1227 aa14.53□□□□□ -0.08
LDLR-212ENST00000560467 ANKRD44Q8N8A2 993 aa14.53□□□□□ -0.08
LDLR-212ENST00000560467 CD99L2Q8TCZ2 262 aa14.53□□□□□ -0.08
LDLR-212ENST00000560467 GCC1Q96CN9 775 aa14.53□□□□□ -0.08
LDLR-212ENST00000560467 PCDHB15Q9Y5E8 787 aa14.53□□□□□ -0.08
LDLR-212ENST00000560467 LRRFIP2Q9Y608 721 aaKnown RBP14.53□□□□□ -0.08
LDLR-212ENST00000560467 UTYO14607 1347 aa14.52□□□□□ -0.08
LDLR-212ENST00000560467 USP2O75604 605 aaPredicted RBP14.52□□□□□ -0.09
LDLR-212ENST00000560467 NBPF7P0C2Y1 421 aaPredicted RBP14.52□□□□□ -0.09
LDLR-212ENST00000560467 IREB2P48200 963 aaKnown RBP14.52□□□□□ -0.09
LDLR-212ENST00000560467 FKBP1AP62942 108 aaKnown RBP14.52□□□□□ -0.09
LDLR-212ENST00000560467 ATP8B2P98198 1209 aa14.52□□□□□ -0.09
LDLR-212ENST00000560467 HSP90AB4PQ58FF6 505 aa14.52□□□□□ -0.09
LDLR-212ENST00000560467 PTPN18Q99952 460 aa14.52□□□□□ -0.09
LDLR-212ENST00000560467 ELP3Q9H9T3 547 aa14.52□□□□□ -0.09
LDLR-212ENST00000560467 SPDYE2Q495Y8 402 aa14.51□□□□□ -0.09
LDLR-212ENST00000560467 TAF7LQ5H9L4 462 aa14.51□□□□□ -0.09
LDLR-212ENST00000560467 CEP85Q6P2H3 762 aa14.51□□□□□ -0.09
LDLR-212ENST00000560467 ERO1AQ96HE7 468 aa14.51□□□□□ -0.09
LDLR-212ENST00000560467 CNNM1Q9NRU3 951 aa14.51□□□□□ -0.09
LDLR-212ENST00000560467 UNCXA6NJT0 531 aa14.5□□□□□ -0.09
LDLR-212ENST00000560467 SRGAP3O43295 1099 aa14.5□□□□□ -0.09
LDLR-212ENST00000560467 GYG1P46976 350 aa14.5□□□□□ -0.09
LDLR-212ENST00000560467 CCDC57Q2TAC2 916 aa14.5□□□□□ -0.09
LDLR-212ENST00000560467 MFSD14BQ5SR56 506 aa14.5□□□□□ -0.09
LDLR-212ENST00000560467 LDHAL6AQ6ZMR3 332 aa14.5□□□□□ -0.09
LDLR-212ENST00000560467 ANKRD13AQ8IZ07 590 aa14.5□□□□□ -0.09
LDLR-212ENST00000560467 CNKSR2Q8WXI2 1034 aa14.5□□□□□ -0.09
LDLR-212ENST00000560467 OPTNQ96CV9 577 aa14.5□□□□□ -0.09
LDLR-212ENST00000560467 ZNF70Q9UC06 446 aaPredicted RBP14.5□□□□□ -0.09
LDLR-212ENST00000560467 TTF2Q9UNY4 1162 aaKnown RBP14.5□□□□□ -0.09
LDLR-212ENST00000560467 PTPN22Q9Y2R2 807 aa14.5□□□□□ -0.09
LDLR-212ENST00000560467 MKI67P46013 3256 aaKnown RBP14.5□□□□□ -0.09
LDLR-212ENST00000560467 FAM205AQ6ZU69 1335 aa14.49□□□□□ -0.09
LDLR-212ENST00000560467 OTUD7BQ6GQQ9 843 aa14.49□□□□□ -0.09
LDLR-212ENST00000560467 TDRD3Q9H7E2 651 aaKnown RBP14.49□□□□□ -0.09
LDLR-212ENST00000560467 EFCC1Q9HA90 598 aa14.49□□□□□ -0.09
LDLR-212ENST00000560467 TESPA1A2RU30 521 aaPredicted RBP14.48□□□□□ -0.09
LDLR-212ENST00000560467 TCP10L2B9ZVM9 353 aa14.48□□□□□ -0.09
LDLR-212ENST00000560467 IGHDP01880 384 aa14.48□□□□□ -0.09
LDLR-212ENST00000560467 OS9Q13438 667 aaPredicted RBP14.48□□□□□ -0.09
LDLR-212ENST00000560467 TNFAIP1Q13829 316 aa14.48□□□□□ -0.09
LDLR-212ENST00000560467 GRIK5Q16478 980 aa14.48□□□□□ -0.09
LDLR-212ENST00000560467 TDRD7Q8NHU6 1098 aaKnown RBP14.48□□□□□ -0.09
LDLR-212ENST00000560467 BRI3BPQ8WY22 251 aa14.48□□□□□ -0.09
LDLR-212ENST00000560467 ARMC5Q96C12 935 aa14.48□□□□□ -0.09
LDLR-212ENST00000560467 MS4A4AQ96JQ5 239 aa14.48□□□□□ -0.09
LDLR-212ENST00000560467 TEPSINQ96N21 525 aa14.48□□□□□ -0.09
LDLR-212ENST00000560467 PUS3Q9BZE2 481 aaKnown RBP14.48□□□□□ -0.09
LDLR-212ENST00000560467 TMEM39BQ9GZU3 492 aa14.48□□□□□ -0.09
LDLR-212ENST00000560467 KIAA0100Q14667 2235 aaKnown RBP14.47□□□□□ -0.09
LDLR-212ENST00000560467 EN2P19622 333 aaPredicted RBP14.47□□□□□ -0.09
LDLR-212ENST00000560467 HIBADHP31937 336 aaKnown RBP14.47□□□□□ -0.09
LDLR-212ENST00000560467 SP3Q02447 781 aa14.47□□□□□ -0.09
LDLR-212ENST00000560467 VGLL4Q14135 290 aa14.47□□□□□ -0.09
LDLR-212ENST00000560467 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.47□□□□□ -0.09
LDLR-212ENST00000560467 SUCLG2Q96I99 432 aa14.47□□□□□ -0.09
LDLR-212ENST00000560467 FAM84BQ96KN1 310 aaPredicted RBP14.47□□□□□ -0.09
LDLR-212ENST00000560467 BICC1Q9H694 974 aaKnown RBP14.47□□□□□ -0.09
LDLR-212ENST00000560467 SERPINA10Q9UK55 444 aa14.47□□□□□ -0.09
LDLR-212ENST00000560467 SURF6O75683 361 aaKnown RBP14.46□□□□□ -0.09
LDLR-212ENST00000560467 G3BP1Q13283 466 aaKnown RBP eCLIP14.46□□□□□ -0.09
LDLR-212ENST00000560467 MTX1Q13505 466 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms