RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 GGA3Q9NZ52 723 aa15.91■□□□□ 0.14
NEDD8-208ENST00000560427 PASKQ96RG2 1323 aa15.91■□□□□ 0.14
NEDD8-208ENST00000560427 ITGBL1O95965 494 aaPredicted RBP15.9■□□□□ 0.14
NEDD8-208ENST00000560427 CRKP46108 304 aa15.9■□□□□ 0.14
NEDD8-208ENST00000560427 CFAP100Q494V2 611 aa15.9■□□□□ 0.14
NEDD8-208ENST00000560427 HHIPL2Q6UWX4 724 aa15.9■□□□□ 0.14
NEDD8-208ENST00000560427 SULF1Q8IWU6 871 aa15.9■□□□□ 0.14
NEDD8-208ENST00000560427 HSPA6P17066 643 aa15.89■□□□□ 0.13
NEDD8-208ENST00000560427 PRDX5P30044 214 aa15.89■□□□□ 0.13
NEDD8-208ENST00000560427 ANGEL2Q5VTE6 544 aaKnown RBP15.89■□□□□ 0.13
NEDD8-208ENST00000560427 TMED8Q6PL24 325 aaPredicted RBP15.89■□□□□ 0.13
NEDD8-208ENST00000560427 APOBEC3FQ8IUX4 373 aaKnown RBP15.89■□□□□ 0.13
NEDD8-208ENST00000560427 SLF2Q8IX21 1173 aa15.89■□□□□ 0.13
NEDD8-208ENST00000560427 ZDHHC15Q96MV8 337 aa15.89■□□□□ 0.13
NEDD8-208ENST00000560427 RBM5P52756 815 aaKnown RBP eCLIP15.88■□□□□ 0.13
NEDD8-208ENST00000560427 GRIK5Q16478 980 aa15.88■□□□□ 0.13
NEDD8-208ENST00000560427 NBPF9Q3BBW0 867 aa15.88■□□□□ 0.13
NEDD8-208ENST00000560427 KRT26Q7Z3Y9 468 aa15.88■□□□□ 0.13
NEDD8-208ENST00000560427 DZIP1Q86YF9 867 aaKnown RBP15.88■□□□□ 0.13
NEDD8-208ENST00000560427 ZBTB47Q9UFB7 747 aaPredicted RBP15.88■□□□□ 0.13
NEDD8-208ENST00000560427 ABCF2Q9UG63 623 aa15.88■□□□□ 0.13
NEDD8-208ENST00000560427 ECM29Q5VYK3 1845 aa15.87■□□□□ 0.13
NEDD8-208ENST00000560427 APLP1P51693 650 aa15.87■□□□□ 0.13
NEDD8-208ENST00000560427 GSTO1P78417 241 aa15.87■□□□□ 0.13
NEDD8-208ENST00000560427 PI16Q6UXB8 463 aa15.87■□□□□ 0.13
NEDD8-208ENST00000560427 ERICH6Q7L0X2 663 aa15.87■□□□□ 0.13
NEDD8-208ENST00000560427 SMC5Q8IY18 1101 aa15.87■□□□□ 0.13
NEDD8-208ENST00000560427 GPATCH3Q96I76 525 aa15.87■□□□□ 0.13
NEDD8-208ENST00000560427 PPP2R3BQ9Y5P8 575 aa15.87■□□□□ 0.13
NEDD8-208ENST00000560427 MAST2Q6P0Q8 1798 aa15.87■□□□□ 0.13
NEDD8-208ENST00000560427 ATP5JP18859 108 aa15.86■□□□□ 0.13
NEDD8-208ENST00000560427 IRX6P78412 446 aaPredicted RBP15.86■□□□□ 0.13
NEDD8-208ENST00000560427 TNFAIP1Q13829 316 aa15.86■□□□□ 0.13
NEDD8-208ENST00000560427 TTF1Q15361 905 aaPredicted RBP15.86■□□□□ 0.13
NEDD8-208ENST00000560427 SPDYE2Q495Y8 402 aa15.86■□□□□ 0.13
NEDD8-208ENST00000560427 FAM163AQ96GL9 167 aaPredicted RBP15.86■□□□□ 0.13
NEDD8-208ENST00000560427 PRMT6Q96LA8 375 aaPredicted RBP15.86■□□□□ 0.13
NEDD8-208ENST00000560427 GLIS2Q9BZE0 524 aaPredicted RBP15.86■□□□□ 0.13
NEDD8-208ENST00000560427 GAKO14976 1311 aa15.86■□□□□ 0.13
NEDD8-208ENST00000560427 ASTN2O75129 1339 aaPredicted RBP15.86■□□□□ 0.13
NEDD8-208ENST00000560427 AKAP11Q9UKA4 1901 aa15.86■□□□□ 0.13
NEDD8-208ENST00000560427 SMARCA5O60264 1052 aaPredicted RBP15.85■□□□□ 0.13
NEDD8-208ENST00000560427 CYP2E1P05181 493 aaPredicted RBP15.85■□□□□ 0.13
NEDD8-208ENST00000560427 ZAP70P43403 619 aa15.85■□□□□ 0.13
NEDD8-208ENST00000560427 SNRKQ9NRH2 765 aa15.85■□□□□ 0.13
NEDD8-208ENST00000560427 ECHDC1Q9NTX5 307 aa15.85■□□□□ 0.13
NEDD8-208ENST00000560427 LRP2BPQ9P2M1 347 aa15.85■□□□□ 0.13
NEDD8-208ENST00000560427 TTC41PQ6P2S7 1318 aa15.85■□□□□ 0.13
NEDD8-208ENST00000560427 LDHCP07864 332 aa15.84■□□□□ 0.13
NEDD8-208ENST00000560427 FKBP1CQ5VVH2 108 aa15.84■□□□□ 0.13
NEDD8-208ENST00000560427 USP48Q86UV5 1035 aa15.84■□□□□ 0.13
NEDD8-208ENST00000560427 NSUN4Q96CB9 384 aaKnown RBP15.84■□□□□ 0.13
NEDD8-208ENST00000560427 CREBZFQ9NS37 354 aa15.84■□□□□ 0.13
NEDD8-208ENST00000560427 TMOD2Q9NZR1 351 aa15.84■□□□□ 0.13
NEDD8-208ENST00000560427 DAGLAQ9Y4D2 1042 aa15.84■□□□□ 0.13
NEDD8-208ENST00000560427 MROH7-TTC4A0A0A0MT08 1334 aa15.84■□□□□ 0.13
NEDD8-208ENST00000560427 TMEM88BA6NKF7 163 aa15.83■□□□□ 0.12
NEDD8-208ENST00000560427 ADM5C9JUS6 153 aa15.83■□□□□ 0.12
NEDD8-208ENST00000560427 MAP4K4O95819 1239 aaPredicted RBP15.83■□□□□ 0.12
NEDD8-208ENST00000560427 MECOMQ03112 1051 aa15.83■□□□□ 0.12
NEDD8-208ENST00000560427 DIXDC1Q155Q3 683 aa15.83■□□□□ 0.12
NEDD8-208ENST00000560427 ANKRD45Q5TZF3 282 aa15.83■□□□□ 0.12
NEDD8-208ENST00000560427 APOBEC3HQ6NTF7 200 aaKnown RBP15.83■□□□□ 0.12
NEDD8-208ENST00000560427 TBC1D9Q6ZT07 1266 aa15.83■□□□□ 0.12
NEDD8-208ENST00000560427 RAI14Q9P0K7 980 aa15.83■□□□□ 0.12
NEDD8-208ENST00000560427 ZNF70Q9UC06 446 aaPredicted RBP15.83■□□□□ 0.12
NEDD8-208ENST00000560427 PCDHAC2Q9Y5I4 1007 aa15.83■□□□□ 0.12
NEDD8-208ENST00000560427 CLRN2A0PK11 232 aa15.82■□□□□ 0.12
NEDD8-208ENST00000560427 TRAF5O00463 557 aa15.82■□□□□ 0.12
NEDD8-208ENST00000560427 ERC2O15083 957 aa15.82■□□□□ 0.12
NEDD8-208ENST00000560427 IGHDP01880 384 aa15.82■□□□□ 0.12
NEDD8-208ENST00000560427 TNNI2P48788 182 aa15.82■□□□□ 0.12
NEDD8-208ENST00000560427 MAP3K12Q12852 859 aa15.82■□□□□ 0.12
NEDD8-208ENST00000560427 HAUS7Q99871 368 aa15.82■□□□□ 0.12
NEDD8-208ENST00000560427 TDRD3Q9H7E2 651 aaKnown RBP15.82■□□□□ 0.12
NEDD8-208ENST00000560427 VEZTQ9HBM0 779 aa15.82■□□□□ 0.12
NEDD8-208ENST00000560427 PIH1D3Q9NQM4 214 aaKnown RBP15.82■□□□□ 0.12
NEDD8-208ENST00000560427 MX1P20591 662 aa15.81■□□□□ 0.12
NEDD8-208ENST00000560427 CERS3Q8IU89 383 aa15.81■□□□□ 0.12
NEDD8-208ENST00000560427 DOCK2Q92608 1830 aa15.81■□□□□ 0.12
NEDD8-208ENST00000560427 CDCA5Q96FF9 252 aa15.81■□□□□ 0.12
NEDD8-208ENST00000560427 TRPM7Q96QT4 1865 aa15.81■□□□□ 0.12
NEDD8-208ENST00000560427 RPAP1Q9BWH6 1393 aaPredicted RBP15.81■□□□□ 0.12
NEDD8-208ENST00000560427 BCL11AQ9H165 835 aa15.81■□□□□ 0.12
NEDD8-208ENST00000560427 DEFB129Q9H1M3 183 aa15.81■□□□□ 0.12
NEDD8-208ENST00000560427 PAG1Q9NWQ8 432 aa15.81■□□□□ 0.12
NEDD8-208ENST00000560427 AOX1Q06278 1338 aa15.8■□□□□ 0.12
NEDD8-208ENST00000560427 SALL3Q9BXA9 1300 aa15.8■□□□□ 0.12
NEDD8-208ENST00000560427 GPR75-ASB3A0A0A6YYF3 556 aa15.8■□□□□ 0.12
NEDD8-208ENST00000560427 IDH1O75874 414 aaKnown RBP15.8■□□□□ 0.12
NEDD8-208ENST00000560427 GLRX3O76003 335 aaKnown RBP15.8■□□□□ 0.12
NEDD8-208ENST00000560427 CELF2O95319 508 aaKnown RBP15.8■□□□□ 0.12
NEDD8-208ENST00000560427 NEFLP07196 543 aa15.8■□□□□ 0.12
NEDD8-208ENST00000560427 NF2P35240 595 aa15.8■□□□□ 0.12
NEDD8-208ENST00000560427 FKBP1BP68106 108 aa15.8■□□□□ 0.12
NEDD8-208ENST00000560427 NUCB1Q02818 461 aa15.8■□□□□ 0.12
NEDD8-208ENST00000560427 NAA16Q6N069 864 aaPredicted RBP15.8■□□□□ 0.12
NEDD8-208ENST00000560427 FAM83AQ86UY5 434 aa15.8■□□□□ 0.12
NEDD8-208ENST00000560427 ZNF384Q8TF68 577 aa15.8■□□□□ 0.12
NEDD8-208ENST00000560427 DNAJC2Q99543 621 aaKnown RBP15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms