RNA–Protein interactions for RNA: ENST00000559822.1

SPG11-219, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 561 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-219ENST00000559822 CRKP46108 304 aa15.32■□□□□ 0.04
SPG11-219ENST00000559822 KLHDC4Q8TBB5 520 aa15.32■□□□□ 0.04
SPG11-219ENST00000559822 LPIN2Q92539 896 aa15.32■□□□□ 0.04
SPG11-219ENST00000559822 NOB1Q9ULX3 412 aaKnown RBP15.32■□□□□ 0.04
SPG11-219ENST00000559822 IQSEC3Q9UPP2 1182 aaPredicted RBP15.32■□□□□ 0.04
SPG11-219ENST00000559822 NBPF12Q5TAG4 269 aaPredicted RBP15.31■□□□□ 0.04
SPG11-219ENST00000559822 ANKRD13AQ8IZ07 590 aa15.31■□□□□ 0.04
SPG11-219ENST00000559822 TEKT1Q969V4 418 aa15.31■□□□□ 0.04
SPG11-219ENST00000559822 CFHR5Q9BXR6 569 aa15.31■□□□□ 0.04
SPG11-219ENST00000559822 TDRD3Q9H7E2 651 aaKnown RBP15.31■□□□□ 0.04
SPG11-219ENST00000559822 TMOD2Q9NZR1 351 aa15.31■□□□□ 0.04
SPG11-219ENST00000559822 TBC1D8O95759 1140 aa15.3■□□□□ 0.04
SPG11-219ENST00000559822 FGFR2P21802 821 aa15.3■□□□□ 0.04
SPG11-219ENST00000559822 RFX5P48382 616 aaPredicted RBP15.3■□□□□ 0.04
SPG11-219ENST00000559822 RGS19P49795 217 aa15.3■□□□□ 0.04
SPG11-219ENST00000559822 BCAMP50895 628 aa15.3■□□□□ 0.04
SPG11-219ENST00000559822 MLLT1Q03111 559 aaPredicted RBP15.3■□□□□ 0.04
SPG11-219ENST00000559822 PKN2Q16513 984 aaKnown RBP15.3■□□□□ 0.04
SPG11-219ENST00000559822 MRIQ9BWK5 157 aa15.3■□□□□ 0.04
SPG11-219ENST00000559822 FZD1Q9UP38 647 aa15.3■□□□□ 0.04
SPG11-219ENST00000559822 AOX1Q06278 1338 aa15.29■□□□□ 0.04
SPG11-219ENST00000559822 GPR25O00155 361 aa15.29■□□□□ 0.04
SPG11-219ENST00000559822 CIAO1O76071 339 aa15.29■□□□□ 0.04
SPG11-219ENST00000559822 WDR66Q8TBY9 1149 aa15.29■□□□□ 0.04
SPG11-219ENST00000559822 ZNF296Q8WUU4 475 aaPredicted RBP15.29■□□□□ 0.04
SPG11-219ENST00000559822 ARHGAP45Q92619 1136 aa15.29■□□□□ 0.04
SPG11-219ENST00000559822 WNK4Q96J92 1243 aa15.29■□□□□ 0.04
SPG11-219ENST00000559822 CEP126Q9P2H0 1117 aa15.29■□□□□ 0.04
SPG11-219ENST00000559822 TCP10L2B9ZVM9 353 aa15.28■□□□□ 0.04
SPG11-219ENST00000559822 USP2O75604 605 aaPredicted RBP15.28■□□□□ 0.04
SPG11-219ENST00000559822 RARSP54136 660 aaKnown RBP15.28■□□□□ 0.04
SPG11-219ENST00000559822 OTUD7BQ6GQQ9 843 aa15.28■□□□□ 0.04
SPG11-219ENST00000559822 HOOK2Q96ED9 719 aa15.28■□□□□ 0.04
SPG11-219ENST00000559822 CLMNQ96JQ2 1002 aa15.28■□□□□ 0.04
SPG11-219ENST00000559822 ZDHHC15Q96MV8 337 aa15.28■□□□□ 0.04
SPG11-219ENST00000559822 GNL3LQ9NVN8 582 aaKnown RBP15.28■□□□□ 0.04
SPG11-219ENST00000559822 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.28■□□□□ 0.04
SPG11-219ENST00000559822 MYH13Q9UKX3 1938 aa15.27■□□□□ 0.04
SPG11-219ENST00000559822 LAMB1P07942 1786 aa15.27■□□□□ 0.04
SPG11-219ENST00000559822 IPO8O15397 1037 aaKnown RBP15.27■□□□□ 0.04
SPG11-219ENST00000559822 GNAI3P08754 354 aa15.27■□□□□ 0.04
SPG11-219ENST00000559822 IL15P40933 162 aaPredicted RBP15.27■□□□□ 0.04
SPG11-219ENST00000559822 ATP2B3Q16720 1220 aa15.27■□□□□ 0.04
SPG11-219ENST00000559822 FKBP1CQ5VVH2 108 aa15.27■□□□□ 0.04
SPG11-219ENST00000559822 HHIPL2Q6UWX4 724 aa15.27■□□□□ 0.04
SPG11-219ENST00000559822 ATG9AQ7Z3C6 839 aa15.27■□□□□ 0.04
SPG11-219ENST00000559822 IFNL1Q8IU54 200 aa15.27■□□□□ 0.04
SPG11-219ENST00000559822 SIL1Q9H173 461 aa15.27■□□□□ 0.04
SPG11-219ENST00000559822 LRRFIP2Q9Y608 721 aaKnown RBP15.27■□□□□ 0.04
SPG11-219ENST00000559822 FKTNO75072 461 aa15.26■□□□□ 0.03
SPG11-219ENST00000559822 GRIK5Q16478 980 aa15.26■□□□□ 0.03
SPG11-219ENST00000559822 INTS3Q68E01 1043 aaKnown RBP15.26■□□□□ 0.03
SPG11-219ENST00000559822 FAM83AQ86UY5 434 aa15.26■□□□□ 0.03
SPG11-219ENST00000559822 TEPSINQ96N21 525 aa15.26■□□□□ 0.03
SPG11-219ENST00000559822 TMEM39BQ9GZU3 492 aa15.26■□□□□ 0.03
SPG11-219ENST00000559822 SEMA3EO15041 775 aa15.25■□□□□ 0.03
SPG11-219ENST00000559822 COPRSQ9NQ92 184 aa15.25■□□□□ 0.03
SPG11-219ENST00000559822 CSADQ9Y600 493 aa15.25■□□□□ 0.03
SPG11-219ENST00000559822 RPAP1Q9BWH6 1393 aaPredicted RBP15.24■□□□□ 0.03
SPG11-219ENST00000559822 OTOFQ9HC10 1997 aa15.24■□□□□ 0.03
SPG11-219ENST00000559822 MAP3K9P80192 1104 aa15.24■□□□□ 0.03
SPG11-219ENST00000559822 APOBEC3HQ6NTF7 200 aaKnown RBP15.24■□□□□ 0.03
SPG11-219ENST00000559822 OPTNQ96CV9 577 aa15.24■□□□□ 0.03
SPG11-219ENST00000559822 MEIS3Q99687 375 aa15.24■□□□□ 0.03
SPG11-219ENST00000559822 ELP3Q9H9T3 547 aa15.24■□□□□ 0.03
SPG11-219ENST00000559822 DENND2AQ9ULE3 1009 aa15.24■□□□□ 0.03
SPG11-219ENST00000559822 DCAF15Q66K64 600 aa15.23■□□□□ 0.03
SPG11-219ENST00000559822 FBXO46Q6PJ61 603 aaPredicted RBP15.23■□□□□ 0.03
SPG11-219ENST00000559822 ZGPATQ8N5A5 531 aaKnown RBP15.23■□□□□ 0.03
SPG11-219ENST00000559822 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.23■□□□□ 0.03
SPG11-219ENST00000559822 HPS5Q9UPZ3 1129 aa15.23■□□□□ 0.03
SPG11-219ENST00000559822 SALL1Q9NSC2 1324 aa15.22■□□□□ 0.03
SPG11-219ENST00000559822 TESPA1A2RU30 521 aaPredicted RBP15.22■□□□□ 0.03
SPG11-219ENST00000559822 IGF2BP3O00425 579 aaKnown RBP eCLIP15.22■□□□□ 0.03
SPG11-219ENST00000559822 ZBTB22O15209 634 aa15.22■□□□□ 0.03
SPG11-219ENST00000559822 LDHBP07195 334 aaKnown RBP15.22■□□□□ 0.03
SPG11-219ENST00000559822 GTF2A2P52657 109 aa15.22■□□□□ 0.03
SPG11-219ENST00000559822 CACNB3P54284 484 aa15.22■□□□□ 0.03
SPG11-219ENST00000559822 VGLL4Q14135 290 aa15.22■□□□□ 0.03
SPG11-219ENST00000559822 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.22■□□□□ 0.03
SPG11-219ENST00000559822 PA2G4Q9UQ80 394 aaKnown RBP15.22■□□□□ 0.03
SPG11-219ENST00000559822 AKAP2Q9Y2D5 859 aa15.22■□□□□ 0.03
SPG11-219ENST00000559822 SRGAP3O43295 1099 aa15.21■□□□□ 0.03
SPG11-219ENST00000559822 WDHD1O75717 1129 aaPredicted RBP15.21■□□□□ 0.03
SPG11-219ENST00000559822 GJA5P36382 358 aa15.21■□□□□ 0.03
SPG11-219ENST00000559822 MTX1Q13505 466 aa15.21■□□□□ 0.03
SPG11-219ENST00000559822 ATF7IPQ6VMQ6 1270 aa15.21■□□□□ 0.03
SPG11-219ENST00000559822 CDAN1Q8IWY9 1227 aa15.21■□□□□ 0.03
SPG11-219ENST00000559822 ERO1AQ96HE7 468 aa15.21■□□□□ 0.03
SPG11-219ENST00000559822 CRHR2Q13324 411 aa15.2■□□□□ 0.02
SPG11-219ENST00000559822 FRAT1Q92837 279 aaPredicted RBP15.2■□□□□ 0.02
SPG11-219ENST00000559822 WRNIP1Q96S55 665 aa15.2■□□□□ 0.02
SPG11-219ENST00000559822 R3HDMLQ9H3Y0 253 aa15.2■□□□□ 0.02
SPG11-219ENST00000559822 DAGLAQ9Y4D2 1042 aa15.2■□□□□ 0.02
SPG11-219ENST00000559822 PDS5AQ29RF7 1337 aaKnown RBP15.19■□□□□ 0.02
SPG11-219ENST00000559822 CCL15-CCL14A0A0B4J2E2 113 aa15.19■□□□□ 0.02
SPG11-219ENST00000559822 SPDYE5A6NIY4 337 aa15.19■□□□□ 0.02
SPG11-219ENST00000559822 GNAI2P04899 355 aa15.19■□□□□ 0.02
SPG11-219ENST00000559822 TRIM27P14373 513 aa15.19■□□□□ 0.02
SPG11-219ENST00000559822 PRDX5P30044 214 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 104.1 ms