RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 RAPGEF4Q8WZA2 1011 aa13.03□□□□□ -0.32
LDLR-208ENST00000558518 ZNF496Q96IT1 587 aaPredicted RBP13.03□□□□□ -0.32
LDLR-208ENST00000558518 AK7Q96M32 723 aa13.03□□□□□ -0.32
LDLR-208ENST00000558518 PUS3Q9BZE2 481 aaKnown RBP13.03□□□□□ -0.32
LDLR-208ENST00000558518 IMPACTQ9P2X3 320 aa13.03□□□□□ -0.32
LDLR-208ENST00000558518 AKAP17AQ02040 695 aaKnown RBP13.03□□□□□ -0.32
LDLR-208ENST00000558518 LRRFIP1Q32MZ4 808 aaKnown RBP13.03□□□□□ -0.32
LDLR-208ENST00000558518 ANKRD24Q8TF21 1146 aa13.03□□□□□ -0.32
LDLR-208ENST00000558518 ZKSCAN3Q9BRR0 538 aa13.03□□□□□ -0.32
LDLR-208ENST00000558518 OSBPL5Q9H0X9 879 aaPredicted RBP13.03□□□□□ -0.32
LDLR-208ENST00000558518 NFE2L3Q9Y4A8 694 aa13.03□□□□□ -0.32
LDLR-208ENST00000558518 PCDHA5Q9Y5H7 936 aa13.03□□□□□ -0.32
LDLR-208ENST00000558518 NRKQ7Z2Y5 1582 aa13.03□□□□□ -0.32
LDLR-208ENST00000558518 ZNF569Q5MCW4 686 aa13.02□□□□□ -0.32
LDLR-208ENST00000558518 SMARCC2Q8TAQ2 1214 aa13.02□□□□□ -0.32
LDLR-208ENST00000558518 PHF8Q9UPP1 1060 aa13.02□□□□□ -0.32
LDLR-208ENST00000558518 MROH7-TTC4A0A0A0MT08 1334 aa13.02□□□□□ -0.32
LDLR-208ENST00000558518 CBFA2T2O43439 604 aa13.02□□□□□ -0.33
LDLR-208ENST00000558518 NUP133Q8WUM0 1156 aa13.02□□□□□ -0.33
LDLR-208ENST00000558518 hCG_1642624A0A1W2PR95 340 aa13.02□□□□□ -0.33
LDLR-208ENST00000558518 SOWAHDA6NJG2 315 aa13.02□□□□□ -0.33
LDLR-208ENST00000558518 N4BP1O75113 896 aaKnown RBP13.02□□□□□ -0.33
LDLR-208ENST00000558518 JAKMIP3Q5VZ66 844 aa13.02□□□□□ -0.33
LDLR-208ENST00000558518 SLC26A6Q9BXS9 759 aa13.02□□□□□ -0.33
LDLR-208ENST00000558518 PREX1Q8TCU6 1659 aa13.01□□□□□ -0.33
LDLR-208ENST00000558518 PSDA5PKW4 1024 aaPredicted RBP13.01□□□□□ -0.33
LDLR-208ENST00000558518 FANCGO15287 622 aa13.01□□□□□ -0.33
LDLR-208ENST00000558518 TADA3O75528 432 aa13.01□□□□□ -0.33
LDLR-208ENST00000558518 IBSPP21815 317 aaPredicted RBP13.01□□□□□ -0.33
LDLR-208ENST00000558518 CC2D1AQ6P1N0 951 aaPredicted RBP13.01□□□□□ -0.33
LDLR-208ENST00000558518 SMYD4Q8IYR2 804 aaPredicted RBP13.01□□□□□ -0.33
LDLR-208ENST00000558518 TXLNBQ8N3L3 684 aa13.01□□□□□ -0.33
LDLR-208ENST00000558518 OSBP2Q969R2 916 aa13.01□□□□□ -0.33
LDLR-208ENST00000558518 RTEL1Q9NZ71 1219 aa13.01□□□□□ -0.33
LDLR-208ENST00000558518 KCNJ14Q9UNX9 436 aa13.01□□□□□ -0.33
LDLR-208ENST00000558518 ZNF213O14771 459 aa13.01□□□□□ -0.33
LDLR-208ENST00000558518 DHX16O60231 1041 aaKnown RBP13.01□□□□□ -0.33
LDLR-208ENST00000558518 HSP90B2PQ58FF3 399 aa13.01□□□□□ -0.33
LDLR-208ENST00000558518 CCDC102BQ68D86 513 aa13.01□□□□□ -0.33
LDLR-208ENST00000558518 VPS37DQ86XT2 251 aa13.01□□□□□ -0.33
LDLR-208ENST00000558518 FBXO18Q8NFZ0 1043 aa13.01□□□□□ -0.33
LDLR-208ENST00000558518 LLPHQ9BRT6 129 aaKnown RBP13.01□□□□□ -0.33
LDLR-208ENST00000558518 SAMSN1Q9NSI8 373 aaKnown RBP13.01□□□□□ -0.33
LDLR-208ENST00000558518 RAI14Q9P0K7 980 aa13.01□□□□□ -0.33
LDLR-208ENST00000558518 MAST3O60307 1309 aa13.01□□□□□ -0.33
LDLR-208ENST00000558518 A0A1B0GUL7 405 aa13.01□□□□□ -0.33
LDLR-208ENST00000558518 CCP110O43303 1012 aa13.01□□□□□ -0.33
LDLR-208ENST00000558518 PDE4BQ07343 736 aa13.01□□□□□ -0.33
LDLR-208ENST00000558518 SRRTQ9BXP5 876 aaKnown RBP13.01□□□□□ -0.33
LDLR-208ENST00000558518 L2HGDHQ9H9P8 463 aa13.01□□□□□ -0.33
LDLR-208ENST00000558518 FEZ2Q9UHY8 353 aaPredicted RBP13.01□□□□□ -0.33
LDLR-208ENST00000558518 PARP3Q9Y6F1 533 aa13.01□□□□□ -0.33
LDLR-208ENST00000558518 PEAK1Q9H792 1746 aa13.01□□□□□ -0.33
LDLR-208ENST00000558518 POLR2DO15514 142 aaKnown RBP13□□□□□ -0.33
LDLR-208ENST00000558518 CCT6AP40227 531 aaKnown RBP13□□□□□ -0.33
LDLR-208ENST00000558518 METAP2P50579 478 aaKnown RBP eCLIP13□□□□□ -0.335e-7■□□□□ 8.9
LDLR-208ENST00000558518 IP6K1Q92551 441 aa13□□□□□ -0.33
LDLR-208ENST00000558518 EEF2KMTQ96G04 330 aa13□□□□□ -0.33
LDLR-208ENST00000558518 ADAM21Q9UKJ8 722 aa13□□□□□ -0.33
LDLR-208ENST00000558518 B4E1Z4 1266 aa13□□□□□ -0.33
LDLR-208ENST00000558518 ZMYND10O75800 440 aa13□□□□□ -0.33
LDLR-208ENST00000558518 TBC1D8O95759 1140 aa13□□□□□ -0.33
LDLR-208ENST00000558518 CDC27P30260 824 aa13□□□□□ -0.33
LDLR-208ENST00000558518 ADORA1P30542 326 aa13□□□□□ -0.33
LDLR-208ENST00000558518 NCAPHQ15003 741 aa13□□□□□ -0.33
LDLR-208ENST00000558518 LONRF2Q1L5Z9 754 aa13□□□□□ -0.33
LDLR-208ENST00000558518 ZNF790Q6PG37 636 aa13□□□□□ -0.33
LDLR-208ENST00000558518 PPFIBP1Q86W92 1011 aa13□□□□□ -0.33
LDLR-208ENST00000558518 HAUS7Q99871 368 aa13□□□□□ -0.33
LDLR-208ENST00000558518 RASSF4Q9H2L5 321 aa13□□□□□ -0.33
LDLR-208ENST00000558518 MAPK8IP1Q9UQF2 711 aa13□□□□□ -0.33
LDLR-208ENST00000558518 FGAP02671 866 aa13□□□□□ -0.33
LDLR-208ENST00000558518 CEP126Q9P2H0 1117 aa13□□□□□ -0.33
LDLR-208ENST00000558518 VWA3AA6NCI4 1184 aa12.99□□□□□ -0.33
LDLR-208ENST00000558518 EFCAB8A8MWE9 144 aa12.99□□□□□ -0.33
LDLR-208ENST00000558518 KRT40Q6A162 431 aa12.99□□□□□ -0.33
LDLR-208ENST00000558518 DHX37Q8IY37 1157 aaKnown RBP12.99□□□□□ -0.33
LDLR-208ENST00000558518 GOLGA1Q92805 767 aa12.99□□□□□ -0.33
LDLR-208ENST00000558518 SENP2Q9HC62 589 aa12.99□□□□□ -0.33
LDLR-208ENST00000558518 KCNH3Q9ULD8 1083 aa12.99□□□□□ -0.33
LDLR-208ENST00000558518 KAT6BQ8WYB5 2073 aa12.99□□□□□ -0.33
LDLR-208ENST00000558518 CLTCQ00610 1675 aaKnown RBP12.99□□□□□ -0.33
LDLR-208ENST00000558518 RNF113AO15541 343 aaKnown RBP12.99□□□□□ -0.33
LDLR-208ENST00000558518 CHMP4BP1P59074 171 aa12.99□□□□□ -0.33
LDLR-208ENST00000558518 FOXR1Q6PIV2 292 aa12.99□□□□□ -0.33
LDLR-208ENST00000558518 TRIM65Q6PJ69 517 aa12.99□□□□□ -0.33
LDLR-208ENST00000558518 CPLX2Q6PUV4 134 aaKnown RBP12.99□□□□□ -0.33
LDLR-208ENST00000558518 RGS22Q8NE09 1264 aa12.99□□□□□ -0.33
LDLR-208ENST00000558518 CAPZA3Q96KX2 299 aa12.99□□□□□ -0.33
LDLR-208ENST00000558518 CWC15Q9P013 229 aaKnown RBP12.99□□□□□ -0.33
LDLR-208ENST00000558518 USP31Q70CQ4 1352 aa12.99□□□□□ -0.33
LDLR-208ENST00000558518 H3BQF6 201 aa12.99□□□□□ -0.33
LDLR-208ENST00000558518 MYO1CO00159 1063 aa12.99□□□□□ -0.33
LDLR-208ENST00000558518 CHRNA2Q15822 529 aa12.99□□□□□ -0.33
LDLR-208ENST00000558518 REXO1L1PQ8IX06 675 aa12.99□□□□□ -0.33
LDLR-208ENST00000558518 GOLGA6L1Q8N7Z2 621 aa12.99□□□□□ -0.33
LDLR-208ENST00000558518 METTL22Q9BUU2 404 aaPredicted RBP12.99□□□□□ -0.33
LDLR-208ENST00000558518 FAN1Q9Y2M0 1017 aa12.99□□□□□ -0.33
LDLR-208ENST00000558518 TNRQ92752 1358 aa12.98□□□□□ -0.33
LDLR-208ENST00000558518 GRIN1Q05586 938 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 88.9 ms