RNA–Protein interactions for RNA: ENST00000545942.5

CHD4-214, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 1 (best)

Gene CHD4, Length 1,317 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-214ENST00000545942 MKRN3Q13064 507 aaKnown RBP28.35■■■□□ 2.13
CHD4-214ENST00000545942 DGKZQ13574 1117 aa28.35■■■□□ 2.13
CHD4-214ENST00000545942 NBPF12Q5TAG4 269 aaPredicted RBP28.35■■■□□ 2.13
CHD4-214ENST00000545942 CASP8AP2Q9UKL3 1982 aa28.35■■■□□ 2.13
CHD4-214ENST00000545942 IPO8O15397 1037 aaKnown RBP28.34■■■□□ 2.13
CHD4-214ENST00000545942 TM4SF4P48230 202 aa28.34■■■□□ 2.13
CHD4-214ENST00000545942 CEP126Q9P2H0 1117 aa28.34■■■□□ 2.13
CHD4-214ENST00000545942 AKAP11Q9UKA4 1901 aa28.33■■■□□ 2.13
CHD4-214ENST00000545942 UNCXA6NJT0 531 aa28.33■■■□□ 2.13
CHD4-214ENST00000545942 SREBF2Q12772 1141 aa28.33■■■□□ 2.13
CHD4-214ENST00000545942 TEKT1Q969V4 418 aa28.33■■■□□ 2.13
CHD4-214ENST00000545942 SLC10A4Q96EP9 437 aa28.33■■■□□ 2.13
CHD4-214ENST00000545942 SUGT1Q9Y2Z0 365 aa28.33■■■□□ 2.13
CHD4-214ENST00000545942 GNAI3P08754 354 aa28.32■■■□□ 2.12
CHD4-214ENST00000545942 SPRYD7Q5W111 196 aa28.32■■■□□ 2.12
CHD4-214ENST00000545942 MIER1Q8N108 512 aa28.32■■■□□ 2.12
CHD4-214ENST00000545942 IL15P40933 162 aaPredicted RBP28.31■■■□□ 2.12
CHD4-214ENST00000545942 IREB2P48200 963 aaKnown RBP28.31■■■□□ 2.12
CHD4-214ENST00000545942 MRIQ9BWK5 157 aa28.31■■■□□ 2.12
CHD4-214ENST00000545942 MAST3O60307 1309 aa28.31■■■□□ 2.12
CHD4-214ENST00000545942 ATP2B3Q16720 1220 aa28.3■■■□□ 2.12
CHD4-214ENST00000545942 DIEXFQ68CQ4 756 aaKnown RBP28.3■■■□□ 2.12
CHD4-214ENST00000545942 COPRSQ9NQ92 184 aa28.3■■■□□ 2.12
CHD4-214ENST00000545942 PA2G4Q9UQ80 394 aaKnown RBP28.3■■■□□ 2.12
CHD4-214ENST00000545942 CCDC85CA6NKD9 419 aa28.29■■■□□ 2.12
CHD4-214ENST00000545942 TCP10L2B9ZVM9 353 aa28.29■■■□□ 2.12
CHD4-214ENST00000545942 TRIM27P14373 513 aa28.29■■■□□ 2.12
CHD4-214ENST00000545942 TNNI2P48788 182 aa28.29■■■□□ 2.12
CHD4-214ENST00000545942 WDR66Q8TBY9 1149 aa28.29■■■□□ 2.12
CHD4-214ENST00000545942 CLMNQ96JQ2 1002 aa28.29■■■□□ 2.12
CHD4-214ENST00000545942 USP2O75604 605 aaPredicted RBP28.28■■■□□ 2.12
CHD4-214ENST00000545942 BCAR3O75815 825 aa28.28■■■□□ 2.12
CHD4-214ENST00000545942 ZBTB48P10074 688 aaPredicted RBP28.28■■■□□ 2.12
CHD4-214ENST00000545942 ATF7IPQ6VMQ6 1270 aa28.28■■■□□ 2.12
CHD4-214ENST00000545942 FRAT1Q92837 279 aaPredicted RBP28.28■■■□□ 2.12
CHD4-214ENST00000545942 ZDHHC15Q96MV8 337 aa28.28■■■□□ 2.12
CHD4-214ENST00000545942 ZBTB4Q9P1Z0 1013 aaPredicted RBP28.28■■■□□ 2.12
CHD4-214ENST00000545942 HNRNPUQ00839 825 aaKnown RBP eCLIP28.27■■■□□ 2.12
CHD4-214ENST00000545942 TEPSINQ96N21 525 aa28.27■■■□□ 2.12
CHD4-214ENST00000545942 TMEM39BQ9GZU3 492 aa28.27■■■□□ 2.12
CHD4-214ENST00000545942 GNL3LQ9NVN8 582 aaKnown RBP28.27■■■□□ 2.12
CHD4-214ENST00000545942 MANSC4A6NHS7 340 aaPredicted RBP28.26■■■□□ 2.11
CHD4-214ENST00000545942 TBC1D8O95759 1140 aa28.26■■■□□ 2.11
CHD4-214ENST00000545942 ANKRD13AQ8IZ07 590 aa28.26■■■□□ 2.11
CHD4-214ENST00000545942 WNK4Q96J92 1243 aa28.26■■■□□ 2.11
CHD4-214ENST00000545942 SRGAP3O43295 1099 aa28.25■■■□□ 2.11
CHD4-214ENST00000545942 INHBEP58166 350 aa28.25■■■□□ 2.11
CHD4-214ENST00000545942 MTX1Q13505 466 aa28.25■■■□□ 2.11
CHD4-214ENST00000545942 HHIPL2Q6UWX4 724 aa28.25■■■□□ 2.11
CHD4-214ENST00000545942 TMOD2Q9NZR1 351 aa28.25■■■□□ 2.11
CHD4-214ENST00000545942 APOBEC3HQ6NTF7 200 aaKnown RBP28.24■■■□□ 2.11
CHD4-214ENST00000545942 CDAN1Q8IWY9 1227 aa28.24■■■□□ 2.11
CHD4-214ENST00000545942 TNNQ9UQP3 1299 aa28.23■■■□□ 2.11
CHD4-214ENST00000545942 ALDH1A1P00352 501 aa28.22■■■□□ 2.11
CHD4-214ENST00000545942 CACNB3P54284 484 aa28.22■■■□□ 2.11
CHD4-214ENST00000545942 NOM1Q5C9Z4 860 aaKnown RBP28.22■■■□□ 2.11
CHD4-214ENST00000545942 CTU1Q7Z7A3 348 aaKnown RBP28.22■■■□□ 2.11
CHD4-214ENST00000545942 CLUAP1Q96AJ1 413 aa28.22■■■□□ 2.11
CHD4-214ENST00000545942 CFHR5Q9BXR6 569 aa28.22■■■□□ 2.11
CHD4-214ENST00000545942 SEMA3EO15041 775 aa28.21■■■□□ 2.11
CHD4-214ENST00000545942 FKBP1CQ5VVH2 108 aa28.21■■■□□ 2.11
CHD4-214ENST00000545942 ZNF296Q8WUU4 475 aaPredicted RBP28.21■■■□□ 2.11
CHD4-214ENST00000545942 DENND2AQ9ULE3 1009 aa28.21■■■□□ 2.11
CHD4-214ENST00000545942 GPR25O00155 361 aa28.2■■■□□ 2.11
CHD4-214ENST00000545942 GNAI2P04899 355 aa28.2■■■□□ 2.11
CHD4-214ENST00000545942 PHKA1P46020 1223 aa28.2■■■□□ 2.11
CHD4-214ENST00000545942 ZKSCAN2Q63HK3 967 aa28.2■■■□□ 2.11
CHD4-214ENST00000545942 FAM83AQ86UY5 434 aa28.2■■■□□ 2.11
CHD4-214ENST00000545942 CCDC102BQ68D86 513 aa28.19■■■□□ 2.1
CHD4-214ENST00000545942 IFNL1Q8IU54 200 aa28.19■■■□□ 2.1
CHD4-214ENST00000545942 SALL1Q9NSC2 1324 aa28.19■■■□□ 2.1
CHD4-214ENST00000545942 ZBTB22O15209 634 aa28.18■■■□□ 2.1
CHD4-214ENST00000545942 LDHBP07195 334 aaKnown RBP28.18■■■□□ 2.1
CHD4-214ENST00000545942 PRDX5P30044 214 aa28.18■■■□□ 2.1
CHD4-214ENST00000545942 ADORA1P30542 326 aa28.18■■■□□ 2.1
CHD4-214ENST00000545942 ELP3Q9H9T3 547 aa28.18■■■□□ 2.1
CHD4-214ENST00000545942 AKAP2Q9Y2D5 859 aa28.18■■■□□ 2.1
CHD4-214ENST00000545942 GJA5P36382 358 aa28.18■■■□□ 2.1
CHD4-214ENST00000545942 TIMM10P62072 90 aa28.18■■■□□ 2.1
CHD4-214ENST00000545942 PPP1R3FQ6ZSY5 799 aaPredicted RBP28.18■■■□□ 2.1
CHD4-214ENST00000545942 DDX55Q8NHQ9 600 aaKnown RBP eCLIP28.18■■■□□ 2.1
CHD4-214ENST00000545942 HOOK2Q96ED9 719 aa28.18■■■□□ 2.1
CHD4-214ENST00000545942 DAGLAQ9Y4D2 1042 aa28.18■■■□□ 2.1
CHD4-214ENST00000545942 MAP3K9P80192 1104 aa28.17■■■□□ 2.1
CHD4-214ENST00000545942 TFCP2Q12800 502 aa28.17■■■□□ 2.1
CHD4-214ENST00000545942 DIXDC1Q155Q3 683 aa28.17■■■□□ 2.1
CHD4-214ENST00000545942 OPTNQ96CV9 577 aa28.17■■■□□ 2.1
CHD4-214ENST00000545942 MYH13Q9UKX3 1938 aa28.16■■■□□ 2.1
CHD4-214ENST00000545942 A0A1B0GUL7 405 aa28.16■■■□□ 2.1
CHD4-214ENST00000545942 IGF2BP3O00425 579 aaKnown RBP eCLIP28.16■■■□□ 2.1
CHD4-214ENST00000545942 VGLL4Q14135 290 aa28.16■■■□□ 2.1
CHD4-214ENST00000545942 ZGPATQ8N5A5 531 aaKnown RBP28.16■■■□□ 2.1
CHD4-214ENST00000545942 TMEM57Q8N5G2 664 aa28.16■■■□□ 2.1
CHD4-214ENST00000545942 R3HDMLQ9H3Y0 253 aa28.16■■■□□ 2.1
CHD4-214ENST00000545942 CSADQ9Y600 493 aa28.16■■■□□ 2.1
CHD4-214ENST00000545942 PKN2Q16513 984 aaKnown RBP28.15■■■□□ 2.1
CHD4-214ENST00000545942 OTUD7BQ6GQQ9 843 aa28.15■■■□□ 2.1
CHD4-214ENST00000545942 RPAP1Q9BWH6 1393 aaPredicted RBP28.14■■■□□ 2.1
CHD4-214ENST00000545942 FKTNO75072 461 aa28.14■■■□□ 2.09
CHD4-214ENST00000545942 MVPQ14764 893 aaKnown RBP28.14■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 99.6 ms