RNA–Protein interactions for RNA: ENST00000540846.6

SMAD3-204, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-204ENST00000540846 JAG2Q9Y219 1238 aa14.96□□□□□ -0.01
SMAD3-204ENST00000540846 MYH2Q9UKX2 1941 aa14.95□□□□□ -0.02
SMAD3-204ENST00000540846 PTH1RQ03431 593 aa14.95□□□□□ -0.02
SMAD3-204ENST00000540846 CHAF1AQ13111 956 aaPredicted RBP14.95□□□□□ -0.02
SMAD3-204ENST00000540846 TTF1Q15361 905 aaPredicted RBP14.95□□□□□ -0.02
SMAD3-204ENST00000540846 SLFNL1Q499Z3 407 aa14.95□□□□□ -0.02
SMAD3-204ENST00000540846 LARGE2Q8N3Y3 721 aa14.95□□□□□ -0.02
SMAD3-204ENST00000540846 CERS5Q8N5B7 392 aa14.95□□□□□ -0.02
SMAD3-204ENST00000540846 SPRYD3Q8NCJ5 442 aa14.95□□□□□ -0.02
SMAD3-204ENST00000540846 CIZ1Q9ULV3 898 aaPredicted RBP14.95□□□□□ -0.02
SMAD3-204ENST00000540846 SNX14Q9Y5W7 946 aa14.95□□□□□ -0.02
SMAD3-204ENST00000540846 TCRBV5S4A2TA0A5A2 114 aa14.94□□□□□ -0.02
SMAD3-204ENST00000540846 FRAT2O75474 233 aaPredicted RBP14.94□□□□□ -0.02
SMAD3-204ENST00000540846 PRDX5P30044 214 aa14.94□□□□□ -0.02
SMAD3-204ENST00000540846 MCM2P49736 904 aa14.94□□□□□ -0.02
SMAD3-204ENST00000540846 NEK4P51957 841 aa14.94□□□□□ -0.02
SMAD3-204ENST00000540846 GTF2IP78347 998 aa14.94□□□□□ -0.02
SMAD3-204ENST00000540846 NFKBIBQ15653 356 aa14.94□□□□□ -0.02
SMAD3-204ENST00000540846 WDR66Q8TBY9 1149 aa14.94□□□□□ -0.02
SMAD3-204ENST00000540846 DACT2Q5SW24 774 aa14.94□□□□□ -0.02
SMAD3-204ENST00000540846 MAP4K1Q92918 833 aa14.94□□□□□ -0.02
SMAD3-204ENST00000540846 CDK5RAP2Q96SN8 1893 aa14.93□□□□□ -0.02
SMAD3-204ENST00000540846 IDH1O75874 414 aaKnown RBP14.93□□□□□ -0.02
SMAD3-204ENST00000540846 PDE6AP16499 860 aa14.93□□□□□ -0.02
SMAD3-204ENST00000540846 ADD2P35612 726 aa14.93□□□□□ -0.02
SMAD3-204ENST00000540846 NECTIN1Q15223 517 aa14.93□□□□□ -0.02
SMAD3-204ENST00000540846 STRIP1Q5VSL9 837 aa14.93□□□□□ -0.02
SMAD3-204ENST00000540846 ARHGAP27Q6ZUM4 889 aa14.93□□□□□ -0.02
SMAD3-204ENST00000540846 ZNF589Q86UQ0 364 aaPredicted RBP14.93□□□□□ -0.02
SMAD3-204ENST00000540846 RASEFQ8IZ41 740 aa14.93□□□□□ -0.02
SMAD3-204ENST00000540846 ZNRF3Q9ULT6 936 aa14.93□□□□□ -0.02
SMAD3-204ENST00000540846 RBM8AQ9Y5S9 174 aaKnown RBP14.93□□□□□ -0.02
SMAD3-204ENST00000540846 HSP90AA1P07900 732 aaKnown RBP14.92□□□□□ -0.02
SMAD3-204ENST00000540846 FKBP1AP62942 108 aaKnown RBP14.92□□□□□ -0.02
SMAD3-204ENST00000540846 MFSD14BQ5SR56 506 aa14.92□□□□□ -0.02
SMAD3-204ENST00000540846 ZMYM1Q5SVZ6 1142 aa14.92□□□□□ -0.02
SMAD3-204ENST00000540846 TTLL5Q6EMB2 1281 aa14.92□□□□□ -0.02
SMAD3-204ENST00000540846 MXD3Q9BW11 206 aa14.92□□□□□ -0.02
SMAD3-204ENST00000540846 ABCF2Q9UG63 623 aa14.92□□□□□ -0.02
SMAD3-204ENST00000540846 USP17L3A6NCW0 530 aa14.91□□□□□ -0.02
SMAD3-204ENST00000540846 USP17L4A6NCW7 530 aa14.91□□□□□ -0.02
SMAD3-204ENST00000540846 G3V3G9 751 aa14.91□□□□□ -0.02
SMAD3-204ENST00000540846 RNF113AO15541 343 aaKnown RBP14.91□□□□□ -0.02
SMAD3-204ENST00000540846 MECOMQ03112 1051 aa14.91□□□□□ -0.02
SMAD3-204ENST00000540846 UBE3CQ15386 1083 aa14.91□□□□□ -0.02
SMAD3-204ENST00000540846 SLC9C2Q5TAH2 1124 aa14.91□□□□□ -0.02
SMAD3-204ENST00000540846 DCAF8Q5TAQ9 597 aa14.91□□□□□ -0.02
SMAD3-204ENST00000540846 USP17L1Q7RTZ2 530 aa14.91□□□□□ -0.02
SMAD3-204ENST00000540846 ADGRA1Q86SQ6 560 aa14.91□□□□□ -0.02
SMAD3-204ENST00000540846 NIM1KQ8IY84 436 aa14.91□□□□□ -0.02
SMAD3-204ENST00000540846 TBC1D22AQ8WUA7 517 aa14.91□□□□□ -0.02
SMAD3-204ENST00000540846 NSUN4Q96CB9 384 aaKnown RBP14.91□□□□□ -0.02
SMAD3-204ENST00000540846 TM6SF1Q9BZW5 370 aa14.91□□□□□ -0.02
SMAD3-204ENST00000540846 HELLSQ9NRZ9 838 aa14.91□□□□□ -0.02
SMAD3-204ENST00000540846 LRP2BPQ9P2M1 347 aa14.91□□□□□ -0.02
SMAD3-204ENST00000540846 RPAP1Q9BWH6 1393 aaPredicted RBP14.91□□□□□ -0.02
SMAD3-204ENST00000540846 FZD9O00144 591 aa14.9□□□□□ -0.02
SMAD3-204ENST00000540846 IGSF3O75054 1194 aa14.9□□□□□ -0.02
SMAD3-204ENST00000540846 ZFYP08048 801 aaPredicted RBP14.9□□□□□ -0.02
SMAD3-204ENST00000540846 LMNB1P20700 586 aa14.9□□□□□ -0.02
SMAD3-204ENST00000540846 MAP3K12Q12852 859 aa14.9□□□□□ -0.02
SMAD3-204ENST00000540846 MCMDC2Q4G0Z9 681 aa14.9□□□□□ -0.02
SMAD3-204ENST00000540846 ZGPATQ8N5A5 531 aaKnown RBP14.9□□□□□ -0.02
SMAD3-204ENST00000540846 OSBP2Q969R2 916 aa14.9□□□□□ -0.02
SMAD3-204ENST00000540846 SEC62Q99442 399 aaKnown RBP14.9□□□□□ -0.02
SMAD3-204ENST00000540846 GMLQ99445 158 aa14.9□□□□□ -0.02
SMAD3-204ENST00000540846 UPF3BQ9BZI7 483 aaKnown RBP14.9□□□□□ -0.02
SMAD3-204ENST00000540846 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.9□□□□□ -0.02
SMAD3-204ENST00000540846 MAST3O60307 1309 aa14.9□□□□□ -0.02
SMAD3-204ENST00000540846 ZNF532Q9HCE3 1301 aa14.9□□□□□ -0.02
SMAD3-204ENST00000540846 FOCADQ5VW36 1801 aa14.9□□□□□ -0.02
SMAD3-204ENST00000540846 ECM29Q5VYK3 1845 aa14.9□□□□□ -0.02
SMAD3-204ENST00000540846 VIL1P09327 827 aaKnown RBP14.9□□□□□ -0.02
SMAD3-204ENST00000540846 CXCL9Q07325 125 aa14.9□□□□□ -0.02
SMAD3-204ENST00000540846 LRRFIP1Q32MZ4 808 aaKnown RBP14.9□□□□□ -0.02
SMAD3-204ENST00000540846 CREB3L3Q68CJ9 461 aa14.9□□□□□ -0.02
SMAD3-204ENST00000540846 MAGEB6Q8N7X4 407 aa14.9□□□□□ -0.02
SMAD3-204ENST00000540846 APPBP2Q92624 585 aa14.9□□□□□ -0.02
SMAD3-204ENST00000540846 TTC14Q96N46 770 aa14.9□□□□□ -0.02
SMAD3-204ENST00000540846 SUGT1Q9Y2Z0 365 aa14.9□□□□□ -0.02
SMAD3-204ENST00000540846 M0R2C6 588 aa14.89□□□□□ -0.03
SMAD3-204ENST00000540846 PSMD14O00487 310 aa14.89□□□□□ -0.03
SMAD3-204ENST00000540846 SLC27A2O14975 620 aa14.89□□□□□ -0.03
SMAD3-204ENST00000540846 RAD17O75943 681 aa14.89□□□□□ -0.03
SMAD3-204ENST00000540846 LDHBP07195 334 aaKnown RBP14.89□□□□□ -0.03
SMAD3-204ENST00000540846 ZKSCAN1P17029 563 aaPredicted RBP14.89□□□□□ -0.03
SMAD3-204ENST00000540846 SPTY2D1Q68D10 685 aaPredicted RBP14.89□□□□□ -0.03
SMAD3-204ENST00000540846 JDP2Q8WYK2 163 aa14.89□□□□□ -0.03
SMAD3-204ENST00000540846 TMX3Q96JJ7 454 aa14.89□□□□□ -0.03
SMAD3-204ENST00000540846 PUS7LQ9H0K6 701 aaKnown RBP14.89□□□□□ -0.03
SMAD3-204ENST00000540846 RAI14Q9P0K7 980 aa14.89□□□□□ -0.03
SMAD3-204ENST00000540846 CUL4AQ13619 759 aa14.88□□□□□ -0.03
SMAD3-204ENST00000540846 RNF20Q5VTR2 975 aa14.88□□□□□ -0.03
SMAD3-204ENST00000540846 ZSCAN25Q6NSZ9 544 aa14.88□□□□□ -0.03
SMAD3-204ENST00000540846 TMED8Q6PL24 325 aaPredicted RBP14.88□□□□□ -0.03
SMAD3-204ENST00000540846 U3KPZ7 1027 aaPredicted RBP14.88□□□□□ -0.03
SMAD3-204ENST00000540846 ZNF541Q9H0D2 1346 aa14.88□□□□□ -0.03
SMAD3-204ENST00000540846 DDX60LQ5H9U9 1706 aaKnown RBP14.87□□□□□ -0.03
SMAD3-204ENST00000540846 LAMA4Q16363 1823 aa14.87□□□□□ -0.03
SMAD3-204ENST00000540846 FOXP2O15409 715 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms