RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 TSGA10IPQ3SY00 556 aa25.11■■□□□ 1.61
VPS28-208ENST00000527797 CCDC93Q567U6 631 aa25.11■■□□□ 1.61
VPS28-208ENST00000527797 RTKN2Q8IZC4 609 aa25.11■■□□□ 1.61
VPS28-208ENST00000527797 TBC1D22AQ8WUA7 517 aa25.11■■□□□ 1.61
VPS28-208ENST00000527797 PPP1R1BQ9UD71 204 aaPredicted RBP25.11■■□□□ 1.61
VPS28-208ENST00000527797 CD2APQ9Y5K6 639 aa25.11■■□□□ 1.61
VPS28-208ENST00000527797 CACNA1SQ13698 1873 aa25.1■■□□□ 1.61
VPS28-208ENST00000527797 MYO5AQ9Y4I1 1855 aaKnown RBP25.1■■□□□ 1.61
VPS28-208ENST00000527797 PTGER2P43116 358 aa25.1■■□□□ 1.61
VPS28-208ENST00000527797 DZIP1Q86YF9 867 aaKnown RBP25.1■■□□□ 1.61
VPS28-208ENST00000527797 FAM205AQ6ZU69 1335 aa25.1■■□□□ 1.61
VPS28-208ENST00000527797 MAGEB6P1A0A0J9YX57 407 aa25.09■■□□□ 1.61
VPS28-208ENST00000527797 GNAT2P19087 354 aa25.09■■□□□ 1.61
VPS28-208ENST00000527797 DOK7Q18PE1 504 aa25.09■■□□□ 1.61
VPS28-208ENST00000527797 TM6SF1Q9BZW5 370 aa25.09■■□□□ 1.61
VPS28-208ENST00000527797 ARMT1Q9H993 441 aa25.09■■□□□ 1.61
VPS28-208ENST00000527797 MYH13Q9UKX3 1938 aa25.09■■□□□ 1.61
VPS28-208ENST00000527797 FOXP2O15409 715 aa25.08■■□□□ 1.61
VPS28-208ENST00000527797 PSMA5P28066 241 aa25.08■■□□□ 1.61
VPS28-208ENST00000527797 KRT32Q14532 448 aa25.08■■□□□ 1.61
VPS28-208ENST00000527797 ADGRA1Q86SQ6 560 aa25.08■■□□□ 1.61
VPS28-208ENST00000527797 MIGA1Q8NAN2 632 aa25.08■■□□□ 1.61
VPS28-208ENST00000527797 JAKMIP1Q96N16 626 aaKnown RBP25.08■■□□□ 1.61
VPS28-208ENST00000527797 PATL2C9JE40 543 aaKnown RBP25.08■■□□□ 1.6
VPS28-208ENST00000527797 CD2BP2O95400 341 aaKnown RBP25.08■■□□□ 1.6
VPS28-208ENST00000527797 APPP05067 770 aa25.08■■□□□ 1.6
VPS28-208ENST00000527797 CYP21A2P08686 494 aa25.08■■□□□ 1.6
VPS28-208ENST00000527797 GTF2IP78347 998 aa25.08■■□□□ 1.6
VPS28-208ENST00000527797 SOGA3Q5TF21 947 aa25.08■■□□□ 1.6
VPS28-208ENST00000527797 PODNQ7Z5L7 613 aa25.08■■□□□ 1.6
VPS28-208ENST00000527797 KLHL34Q8N239 644 aa25.08■■□□□ 1.6
VPS28-208ENST00000527797 SNED1Q8TER0 1413 aa25.08■■□□□ 1.6
VPS28-208ENST00000527797 ZNF384Q8TF68 577 aa25.08■■□□□ 1.6
VPS28-208ENST00000527797 UPF3BQ9BZI7 483 aaKnown RBP25.08■■□□□ 1.6
VPS28-208ENST00000527797 FGAP02671 866 aa25.07■■□□□ 1.6
VPS28-208ENST00000527797 GSTO1P78417 241 aa25.07■■□□□ 1.6
VPS28-208ENST00000527797 ADCK5Q3MIX3 580 aa25.07■■□□□ 1.6
VPS28-208ENST00000527797 LCORLQ8N3X6 602 aa25.07■■□□□ 1.6
VPS28-208ENST00000527797 CASTP20810 708 aaKnown RBP25.06■■□□□ 1.6
VPS28-208ENST00000527797 DALRD3Q5D0E6 543 aaKnown RBP25.06■■□□□ 1.6
VPS28-208ENST00000527797 MFSD14BQ5SR56 506 aa25.06■■□□□ 1.6
VPS28-208ENST00000527797 K7ELQ4 463 aaPredicted RBP25.05■■□□□ 1.6
VPS28-208ENST00000527797 KIAA2012Q0VF49 1180 aa25.05■■□□□ 1.6
VPS28-208ENST00000527797 IMMTQ16891 758 aaKnown RBP25.05■■□□□ 1.6
VPS28-208ENST00000527797 PSMD1Q99460 953 aa25.05■■□□□ 1.6
VPS28-208ENST00000527797 ZSWIM6Q9HCJ5 1215 aa25.05■■□□□ 1.6
VPS28-208ENST00000527797 SLC4A4Q9Y6R1 1079 aa25.05■■□□□ 1.6
VPS28-208ENST00000527797 LDHCP07864 332 aa25.04■■□□□ 1.6
VPS28-208ENST00000527797 MCM2P49736 904 aa25.04■■□□□ 1.6
VPS28-208ENST00000527797 ALX1Q15699 326 aa25.04■■□□□ 1.6
VPS28-208ENST00000527797 TTLL5Q6EMB2 1281 aa25.04■■□□□ 1.6
VPS28-208ENST00000527797 ILDR2Q71H61 639 aa25.04■■□□□ 1.6
VPS28-208ENST00000527797 FBXW7Q969H0 707 aa25.04■■□□□ 1.6
VPS28-208ENST00000527797 RIOK1Q9BRS2 568 aaKnown RBP25.04■■□□□ 1.6
VPS28-208ENST00000527797 DBNDD1Q9H9R9 158 aa25.04■■□□□ 1.6
VPS28-208ENST00000527797 CYP46A1Q9Y6A2 500 aa25.04■■□□□ 1.6
VPS28-208ENST00000527797 RPAP1Q9BWH6 1393 aaPredicted RBP25.04■■□□□ 1.6
VPS28-208ENST00000527797 AOC3Q16853 763 aa25.04■■□□□ 1.6
VPS28-208ENST00000527797 NACAP1Q9BZK3 213 aa25.04■■□□□ 1.6
VPS28-208ENST00000527797 SPON1Q9HCB6 807 aa25.04■■□□□ 1.6
VPS28-208ENST00000527797 TAF6LQ9Y6J9 622 aa25.04■■□□□ 1.6
VPS28-208ENST00000527797 GRIK5Q16478 980 aa25.03■■□□□ 1.6
VPS28-208ENST00000527797 RUFY3Q7L099 469 aa25.03■■□□□ 1.6
VPS28-208ENST00000527797 SUGT1Q9Y2Z0 365 aa25.03■■□□□ 1.6
VPS28-208ENST00000527797 GSG1L2A8MUP6 293 aa25.02■■□□□ 1.6
VPS28-208ENST00000527797 ECE2O60344 883 aa25.02■■□□□ 1.6
VPS28-208ENST00000527797 DYNLL1P63167 89 aaKnown RBP25.02■■□□□ 1.6
VPS28-208ENST00000527797 IFNL3Q8IZI9 196 aa25.02■■□□□ 1.6
VPS28-208ENST00000527797 ZNF213O14771 459 aa25.01■■□□□ 1.59
VPS28-208ENST00000527797 PPIP5K2O43314 1243 aa25.01■■□□□ 1.59
VPS28-208ENST00000527797 PRKAB2O43741 272 aa25.01■■□□□ 1.59
VPS28-208ENST00000527797 BLOC1S2Q6QNY1 142 aa25.01■■□□□ 1.59
VPS28-208ENST00000527797 SLF2Q8IX21 1173 aa25.01■■□□□ 1.59
VPS28-208ENST00000527797 NEK1Q96PY6 1258 aa25.01■■□□□ 1.59
VPS28-208ENST00000527797 NAPBQ9H115 298 aa25.01■■□□□ 1.59
VPS28-208ENST00000527797 ZMYM6O95789 1325 aa25.01■■□□□ 1.59
VPS28-208ENST00000527797 KIAA1551Q9HCM1 1747 aa25.01■■□□□ 1.59
VPS28-208ENST00000527797 PDRG1Q9NUG6 133 aa25.01■■□□□ 1.59
VPS28-208ENST00000527797 AATFQ9NY61 560 aaKnown RBP eCLIP25.01■■□□□ 1.596e-6■■■■□ 25.6
VPS28-208ENST00000527797 MAST2Q6P0Q8 1798 aa25■■□□□ 1.59
VPS28-208ENST00000527797 CPA1P15085 419 aa25■■□□□ 1.59
VPS28-208ENST00000527797 TTC14Q96N46 770 aa25■■□□□ 1.59
VPS28-208ENST00000527797 NOL10Q9BSC4 688 aaKnown RBP25■■□□□ 1.59
VPS28-208ENST00000527797 VPS33BQ9H267 617 aa25■■□□□ 1.59
VPS28-208ENST00000527797 EPB41L4AQ9HCS5 686 aaPredicted RBP25■■□□□ 1.59
VPS28-208ENST00000527797 BAG3O95817 575 aa24.99■■□□□ 1.59
VPS28-208ENST00000527797 HMGB1P09429 215 aaKnown RBP24.99■■□□□ 1.59
VPS28-208ENST00000527797 HAND2P61296 217 aa24.99■■□□□ 1.59
VPS28-208ENST00000527797 MROH7-TTC4A0A0A0MT08 1334 aa24.98■■□□□ 1.59
VPS28-208ENST00000527797 E7EWF7 191 aa24.98■■□□□ 1.59
VPS28-208ENST00000527797 TDO2P48775 406 aa24.98■■□□□ 1.59
VPS28-208ENST00000527797 DIXDC1Q155Q3 683 aa24.98■■□□□ 1.59
VPS28-208ENST00000527797 STRIP1Q5VSL9 837 aa24.98■■□□□ 1.59
VPS28-208ENST00000527797 STOX1Q6ZVD7 989 aa24.98■■□□□ 1.59
VPS28-208ENST00000527797 CRNKL1Q9BZJ0 848 aaKnown RBP24.98■■□□□ 1.59
VPS28-208ENST00000527797 RPS6KB1P23443 525 aa24.97■■□□□ 1.59
VPS28-208ENST00000527797 FKBP1AP62942 108 aaKnown RBP24.97■■□□□ 1.59
VPS28-208ENST00000527797 FAM163AQ96GL9 167 aaPredicted RBP24.97■■□□□ 1.59
VPS28-208ENST00000527797 CERS3Q8IU89 383 aa24.97■■□□□ 1.59
VPS28-208ENST00000527797 CERS5Q8N5B7 392 aa24.97■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms