RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 MKRN4PQ13434 485 aaPredicted RBP9.66□□□□□ -0.86
CSMD1-213ENST00000523488 HSP90B2PQ58FF3 399 aa9.66□□□□□ -0.86
CSMD1-213ENST00000523488 SRGAP1Q7Z6B7 1085 aa9.66□□□□□ -0.86
CSMD1-213ENST00000523488 FAM177A1Q8N128 213 aaPredicted RBP9.66□□□□□ -0.86
CSMD1-213ENST00000523488 ANKRD20A12PQ8NF67 263 aa9.66□□□□□ -0.86
CSMD1-213ENST00000523488 CDHR2Q9BYE9 1310 aa9.66□□□□□ -0.86
CSMD1-213ENST00000523488 PFKFB2O60825 505 aa9.66□□□□□ -0.86
CSMD1-213ENST00000523488 GPTP24298 496 aa9.66□□□□□ -0.86
CSMD1-213ENST00000523488 ERC1Q8IUD2 1116 aa9.66□□□□□ -0.86
CSMD1-213ENST00000523488 CFAP45Q9UL16 551 aa9.66□□□□□ -0.86
CSMD1-213ENST00000523488 CYP46A1Q9Y6A2 500 aa9.66□□□□□ -0.86
CSMD1-213ENST00000523488 SLC27A2O14975 620 aa9.65□□□□□ -0.86
CSMD1-213ENST00000523488 RAPGEF3O95398 923 aa9.65□□□□□ -0.86
CSMD1-213ENST00000523488 SETQ01105 290 aaPredicted RBP9.65□□□□□ -0.86
CSMD1-213ENST00000523488 MAP9Q49MG5 647 aa9.65□□□□□ -0.86
CSMD1-213ENST00000523488 PREPLQ4J6C6 727 aaPredicted RBP9.65□□□□□ -0.86
CSMD1-213ENST00000523488 ADALQ6DHV7 355 aa9.65□□□□□ -0.86
CSMD1-213ENST00000523488 TTLL5Q6EMB2 1281 aa9.65□□□□□ -0.86
CSMD1-213ENST00000523488 HDXQ7Z353 690 aa9.65□□□□□ -0.86
CSMD1-213ENST00000523488 JMYQ8N9B5 988 aa9.65□□□□□ -0.86
CSMD1-213ENST00000523488 SPATA20Q8TB22 786 aa9.65□□□□□ -0.86
CSMD1-213ENST00000523488 CARD6Q9BX69 1037 aa9.65□□□□□ -0.86
CSMD1-213ENST00000523488 VPS18Q9P253 973 aa9.65□□□□□ -0.86
CSMD1-213ENST00000523488 USP6P35125 1406 aa9.65□□□□□ -0.86
CSMD1-213ENST00000523488 BHMG1C9JSJ3 638 aaPredicted RBP9.65□□□□□ -0.86
CSMD1-213ENST00000523488 MAP2K2P36507 400 aa9.65□□□□□ -0.86
CSMD1-213ENST00000523488 CREB3L3Q68CJ9 461 aa9.65□□□□□ -0.86
CSMD1-213ENST00000523488 LMOD2Q6P5Q4 547 aa9.65□□□□□ -0.86
CSMD1-213ENST00000523488 FOXR1Q6PIV2 292 aa9.65□□□□□ -0.86
CSMD1-213ENST00000523488 CNTROBQ8N137 903 aa9.65□□□□□ -0.86
CSMD1-213ENST00000523488 GOLGA1Q92805 767 aa9.65□□□□□ -0.86
CSMD1-213ENST00000523488 KCNG1Q9UIX4 513 aa9.65□□□□□ -0.86
CSMD1-213ENST00000523488 CTDNEP1O95476 244 aa9.65□□□□□ -0.87
CSMD1-213ENST00000523488 ATP6V1AP38606 617 aa9.65□□□□□ -0.87
CSMD1-213ENST00000523488 FAM173BQ6P4H8 233 aa9.65□□□□□ -0.87
CSMD1-213ENST00000523488 SPATS2Q86XZ4 545 aaKnown RBP9.65□□□□□ -0.87
CSMD1-213ENST00000523488 POLR3EQ9NVU0 708 aa9.65□□□□□ -0.87
CSMD1-213ENST00000523488 KIAA1468Q9P260 1216 aa9.65□□□□□ -0.87
CSMD1-213ENST00000523488 MYO1AQ9UBC5 1043 aa9.65□□□□□ -0.87
CSMD1-213ENST00000523488 IQSEC3Q9UPP2 1182 aaPredicted RBP9.65□□□□□ -0.87
CSMD1-213ENST00000523488 PALLDQ8WX93 1383 aa9.65□□□□□ -0.87
CSMD1-213ENST00000523488 HIP1O00291 1037 aa9.64□□□□□ -0.87
CSMD1-213ENST00000523488 PPP1R12AO14974 1030 aaPredicted RBP9.64□□□□□ -0.87
CSMD1-213ENST00000523488 ICA1Q05084 483 aa9.64□□□□□ -0.87
CSMD1-213ENST00000523488 ITIH3Q06033 890 aa9.64□□□□□ -0.87
CSMD1-213ENST00000523488 GRIK3Q13003 919 aa9.64□□□□□ -0.87
CSMD1-213ENST00000523488 PANX2Q96RD6 677 aa9.64□□□□□ -0.87
CSMD1-213ENST00000523488 WNK3Q9BYP7 1800 aa9.64□□□□□ -0.87
CSMD1-213ENST00000523488 TRPM3Q9HCF6 1732 aaPredicted RBP9.64□□□□□ -0.87
CSMD1-213ENST00000523488 USP8P40818 1118 aa9.64□□□□□ -0.87
CSMD1-213ENST00000523488 MDM2Q00987 491 aaPredicted RBP9.64□□□□□ -0.87
CSMD1-213ENST00000523488 LARP1Q6PKG0 1096 aaKnown RBP9.64□□□□□ -0.87
CSMD1-213ENST00000523488 TAX1BP1Q86VP1 789 aa9.64□□□□□ -0.87
CSMD1-213ENST00000523488 XPO4Q9C0E2 1151 aaKnown RBP9.64□□□□□ -0.87
CSMD1-213ENST00000523488 PLEKHG1Q9ULL1 1385 aa9.64□□□□□ -0.87
CSMD1-213ENST00000523488 GOLIM4O00461 696 aa9.64□□□□□ -0.87
CSMD1-213ENST00000523488 EIF3JO75822 258 aaKnown RBP9.64□□□□□ -0.87
CSMD1-213ENST00000523488 GLRX3O76003 335 aaKnown RBP9.64□□□□□ -0.87
CSMD1-213ENST00000523488 COL9A3Q14050 684 aaPredicted RBP9.64□□□□□ -0.87
CSMD1-213ENST00000523488 MCM6Q14566 821 aa9.64□□□□□ -0.87
CSMD1-213ENST00000523488 HDGFL2Q7Z4V5 671 aaPredicted RBP9.64□□□□□ -0.87
CSMD1-213ENST00000523488 TC2NQ8N9U0 490 aa9.64□□□□□ -0.87
CSMD1-213ENST00000523488 RHPN1Q8TCX5 695 aa9.64□□□□□ -0.87
CSMD1-213ENST00000523488 PPP2R2CQ9Y2T4 447 aa9.64□□□□□ -0.87
CSMD1-213ENST00000523488 MYH8P13535 1937 aa9.64□□□□□ -0.87
CSMD1-213ENST00000523488 ITIH6Q6UXX5 1313 aa9.63□□□□□ -0.87
CSMD1-213ENST00000523488 ZSCAN12O43309 604 aa9.63□□□□□ -0.87
CSMD1-213ENST00000523488 RASSF9O75901 435 aa9.63□□□□□ -0.87
CSMD1-213ENST00000523488 YEATS4O95619 227 aa9.63□□□□□ -0.87
CSMD1-213ENST00000523488 PSMA5P28066 241 aa9.63□□□□□ -0.87
CSMD1-213ENST00000523488 EXOSC10Q01780 885 aaKnown RBP9.63□□□□□ -0.87
CSMD1-213ENST00000523488 PPP2R3AQ06190 1150 aa9.63□□□□□ -0.87
CSMD1-213ENST00000523488 NAT10Q9H0A0 1025 aaKnown RBP9.63□□□□□ -0.87
CSMD1-213ENST00000523488 WDR19Q8NEZ3 1342 aa9.63□□□□□ -0.87
CSMD1-213ENST00000523488 ANKRD36CQ5JPF3 1778 aa9.63□□□□□ -0.87
CSMD1-213ENST00000523488 A6NNZ2 444 aa9.63□□□□□ -0.87
CSMD1-213ENST00000523488 ANKRD65E5RJM6 399 aa9.63□□□□□ -0.87
CSMD1-213ENST00000523488 SH2B2O14492 632 aaPredicted RBP9.63□□□□□ -0.87
CSMD1-213ENST00000523488 HMOX1P09601 288 aa9.63□□□□□ -0.87
CSMD1-213ENST00000523488 ERCC3P19447 782 aa9.63□□□□□ -0.87
CSMD1-213ENST00000523488 TUBB8Q3ZCM7 444 aa9.63□□□□□ -0.87
CSMD1-213ENST00000523488 RASGRP2Q7LDG7 609 aa9.63□□□□□ -0.87
CSMD1-213ENST00000523488 TMC6Q7Z403 805 aa9.63□□□□□ -0.87
CSMD1-213ENST00000523488 CEP57L1Q8IYX8 460 aa9.63□□□□□ -0.87
CSMD1-213ENST00000523488 CTCFLQ8NI51 663 aaPredicted RBP9.63□□□□□ -0.87
CSMD1-213ENST00000523488 NAA15Q9BXJ9 866 aaKnown RBP9.63□□□□□ -0.87
CSMD1-213ENST00000523488 KIAA1551Q9HCM1 1747 aa9.63□□□□□ -0.87
CSMD1-213ENST00000523488 EXOC5O00471 708 aa9.62□□□□□ -0.87
CSMD1-213ENST00000523488 LMNB2Q03252 620 aa9.62□□□□□ -0.87
CSMD1-213ENST00000523488 G2E3Q7L622 706 aa9.62□□□□□ -0.87
CSMD1-213ENST00000523488 EVI5LQ96CN4 794 aa9.62□□□□□ -0.87
CSMD1-213ENST00000523488 PNKPQ96T60 521 aa9.62□□□□□ -0.87
CSMD1-213ENST00000523488 AGPSO00116 658 aa9.62□□□□□ -0.87
CSMD1-213ENST00000523488 DRP2Q13474 957 aa9.62□□□□□ -0.87
CSMD1-213ENST00000523488 CCDC30Q5VVM6 783 aa9.62□□□□□ -0.87
CSMD1-213ENST00000523488 CCDC73Q6ZRK6 1079 aa9.62□□□□□ -0.87
CSMD1-213ENST00000523488 MAB21L3Q8N8X9 362 aa9.62□□□□□ -0.87
CSMD1-213ENST00000523488 C3orf20Q8ND61 904 aa9.62□□□□□ -0.87
CSMD1-213ENST00000523488 CCDC102AQ96A19 550 aa9.62□□□□□ -0.87
CSMD1-213ENST00000523488 WDR24Q96S15 920 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms