RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 CHRNA5P30532 468 aa3.62□□□□□ -1.83
MCF2-208ENST00000519895 PDE6BP35913 854 aa3.62□□□□□ -1.83
MCF2-208ENST00000519895 FKBP4Q02790 459 aaKnown RBP eCLIP3.62□□□□□ -1.83
MCF2-208ENST00000519895 SF3B3Q15393 1217 aaKnown RBP3.62□□□□□ -1.83
MCF2-208ENST00000519895 ASCL5Q7RTU5 278 aa3.62□□□□□ -1.83
MCF2-208ENST00000519895 CCDC191Q8NCU4 936 aa3.62□□□□□ -1.83
MCF2-208ENST00000519895 NECAB3Q96P71 396 aaPredicted RBP3.62□□□□□ -1.83
MCF2-208ENST00000519895 CRISPLD2Q9H0B8 497 aa3.62□□□□□ -1.83
MCF2-208ENST00000519895 TSPYL4Q9UJ04 414 aa3.62□□□□□ -1.83
MCF2-208ENST00000519895 POLRMTO00411 1230 aaKnown RBP3.62□□□□□ -1.83
MCF2-208ENST00000519895 SEMA3EO15041 775 aa3.62□□□□□ -1.83
MCF2-208ENST00000519895 VAMP4O75379 141 aa3.62□□□□□ -1.83
MCF2-208ENST00000519895 SRSF1Q07955 248 aaKnown RBP eCLIP3.62□□□□□ -1.83
MCF2-208ENST00000519895 TRPM4Q8TD43 1214 aa3.62□□□□□ -1.83
MCF2-208ENST00000519895 CHAMP1Q96JM3 812 aa3.62□□□□□ -1.83
MCF2-208ENST00000519895 FAM161BQ96MY7 647 aa3.62□□□□□ -1.83
MCF2-208ENST00000519895 ALG13Q9NP73 1137 aaKnown RBP3.62□□□□□ -1.83
MCF2-208ENST00000519895 MBIPQ9NS73 344 aa3.62□□□□□ -1.83
MCF2-208ENST00000519895 GAKO14976 1311 aa3.62□□□□□ -1.83
MCF2-208ENST00000519895 FANCIQ9NVI1 1328 aa3.62□□□□□ -1.83
MCF2-208ENST00000519895 RBAK-RBAKDNI3L0D1 243 aa3.62□□□□□ -1.83
MCF2-208ENST00000519895 PCCAP05165 728 aaPredicted RBP3.62□□□□□ -1.83
MCF2-208ENST00000519895 SCNN1DP51172 638 aa3.62□□□□□ -1.83
MCF2-208ENST00000519895 TCIRG1Q13488 830 aa3.62□□□□□ -1.83
MCF2-208ENST00000519895 DIEXFQ68CQ4 756 aaKnown RBP3.62□□□□□ -1.83
MCF2-208ENST00000519895 KIF6Q6ZMV9 814 aa3.62□□□□□ -1.83
MCF2-208ENST00000519895 PPP1R42Q7Z4L9 355 aa3.62□□□□□ -1.83
MCF2-208ENST00000519895 NECAB2Q7Z6G3 386 aa3.62□□□□□ -1.83
MCF2-208ENST00000519895 RTFDC1Q9BY42 306 aaPredicted RBP3.62□□□□□ -1.83
MCF2-208ENST00000519895 BCL2L12Q9HB09 334 aa3.62□□□□□ -1.83
MCF2-208ENST00000519895 NCOR1O75376 2440 aa3.61□□□□□ -1.83
MCF2-208ENST00000519895 UNCXA6NJT0 531 aa3.61□□□□□ -1.83
MCF2-208ENST00000519895 APAF1O14727 1248 aa3.61□□□□□ -1.83
MCF2-208ENST00000519895 SOX12O15370 315 aa3.61□□□□□ -1.83
MCF2-208ENST00000519895 SGPL1O95470 568 aa3.61□□□□□ -1.83
MCF2-208ENST00000519895 TNNT2P45379 298 aaPredicted RBP3.61□□□□□ -1.83
MCF2-208ENST00000519895 FKBP1AP62942 108 aaKnown RBP3.61□□□□□ -1.83
MCF2-208ENST00000519895 NBPF9Q3BBW0 867 aa3.61□□□□□ -1.83
MCF2-208ENST00000519895 DUSP27Q5VZP5 1158 aa3.61□□□□□ -1.83
MCF2-208ENST00000519895 KSR2Q6VAB6 950 aa3.61□□□□□ -1.83
MCF2-208ENST00000519895 DNAJC10Q8IXB1 793 aa3.61□□□□□ -1.83
MCF2-208ENST00000519895 SLAIN1Q8ND83 568 aa3.61□□□□□ -1.83
MCF2-208ENST00000519895 METTL22Q9BUU2 404 aaPredicted RBP3.61□□□□□ -1.83
MCF2-208ENST00000519895 PTCH2Q9Y6C5 1203 aa3.61□□□□□ -1.83
MCF2-208ENST00000519895 ANKRD17O75179 2603 aaKnown RBP3.61□□□□□ -1.83
MCF2-208ENST00000519895 PDS5AQ29RF7 1337 aaKnown RBP3.61□□□□□ -1.83
MCF2-208ENST00000519895 H0YIN7 160 aa3.61□□□□□ -1.83
MCF2-208ENST00000519895 ARHGAP6O43182 974 aa3.61□□□□□ -1.83
MCF2-208ENST00000519895 ZPR1O75312 459 aa3.61□□□□□ -1.83
MCF2-208ENST00000519895 RFC4P35249 363 aa3.61□□□□□ -1.83
MCF2-208ENST00000519895 KCTD17Q8N5Z5 321 aa3.61□□□□□ -1.83
MCF2-208ENST00000519895 KHSRPQ92945 711 aaKnown RBP eCLIP3.61□□□□□ -1.83
MCF2-208ENST00000519895 BORCS6Q96GS4 357 aa3.61□□□□□ -1.83
MCF2-208ENST00000519895 API5Q9BZZ5 524 aaKnown RBP3.61□□□□□ -1.83
MCF2-208ENST00000519895 FBN3Q75N90 2809 aa3.61□□□□□ -1.83
MCF2-208ENST00000519895 NBPF26B4DH59 902 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 IPO8O15397 1037 aaKnown RBP3.6□□□□□ -1.83
MCF2-208ENST00000519895 C21orf2O43822 256 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 EIF6P56537 245 aaKnown RBP3.6□□□□□ -1.83
MCF2-208ENST00000519895 MTX1Q13505 466 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 PUS10Q3MIT2 529 aaKnown RBP3.6□□□□□ -1.83
MCF2-208ENST00000519895 SUPT20HQ8NEM7 779 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 CNKSR1Q969H4 720 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 PSMD1Q99460 953 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 GLIS2Q9BZE0 524 aaPredicted RBP3.6□□□□□ -1.83
MCF2-208ENST00000519895 ABCC12Q96J65 1359 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 ABCC4O15439 1325 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 MANSC4A6NHS7 340 aaPredicted RBP3.6□□□□□ -1.83
MCF2-208ENST00000519895 A6NJR5 290 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 H7C1W4 665 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 NPR1P16066 1061 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 ALDH1B1P30837 517 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 CCT4P50991 539 aaKnown RBP3.6□□□□□ -1.83
MCF2-208ENST00000519895 UBXN2AP68543 259 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 ST5P78524 1137 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 SP3Q02447 781 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 TPTE2Q6XPS3 522 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 AMIGO3Q86WK7 504 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 CCDC82Q8N4S0 544 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 LINS1Q8NG48 757 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 ATOH1Q92858 354 aaPredicted RBP3.6□□□□□ -1.83
MCF2-208ENST00000519895 RNF166Q96A37 237 aaPredicted RBP3.6□□□□□ -1.83
MCF2-208ENST00000519895 FASNP49327 2511 aaKnown RBP3.6□□□□□ -1.83
MCF2-208ENST00000519895 EYSQ5T1H1 3165 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 GNPATO15228 680 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 BBOX1O75936 387 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 NTSR2O95665 410 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 MAP4K4O95819 1239 aaPredicted RBP3.6□□□□□ -1.83
MCF2-208ENST00000519895 CSF1RP07333 972 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 MCM10Q7L590 875 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 DZIP3Q86Y13 1208 aaKnown RBP3.6□□□□□ -1.83
MCF2-208ENST00000519895 ADSSL1Q8N142 457 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 MRPL50Q8N5N7 158 aaKnown RBP3.6□□□□□ -1.83
MCF2-208ENST00000519895 ZBTB38Q8NAP3 1195 aaPredicted RBP3.6□□□□□ -1.83
MCF2-208ENST00000519895 RGS22Q8NE09 1264 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 MASTLQ96GX5 879 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 STK31Q9BXU1 1019 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 ZBTB1Q9Y2K1 713 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 CACNA1SQ13698 1873 aa3.6□□□□□ -1.83
MCF2-208ENST00000519895 DDX60LQ5H9U9 1706 aaKnown RBP3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms