RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 SPRED3Q2MJR0 410 aa3.81□□□□□ -1.8
HMGB1-208ENST00000490788 EAPPQ56P03 285 aaPredicted RBP3.81□□□□□ -1.8
HMGB1-208ENST00000490788 FDX2Q6P4F2 183 aa3.81□□□□□ -1.8
HMGB1-208ENST00000490788 VN1R5Q7Z5H4 357 aa3.81□□□□□ -1.8
HMGB1-208ENST00000490788 TMEM130Q8N3G9 435 aa3.81□□□□□ -1.8
HMGB1-208ENST00000490788 GALNT11Q8NCW6 608 aa3.81□□□□□ -1.8
HMGB1-208ENST00000490788 TP53INP1Q96A56 240 aa3.81□□□□□ -1.8
HMGB1-208ENST00000490788 KLHDC7BQ96G42 594 aa3.81□□□□□ -1.8
HMGB1-208ENST00000490788 TCF12Q99081 682 aa3.81□□□□□ -1.8
HMGB1-208ENST00000490788 SOX17Q9H6I2 414 aaPredicted RBP3.81□□□□□ -1.8
HMGB1-208ENST00000490788 AKAP2Q9Y2D5 859 aa3.81□□□□□ -1.8
HMGB1-208ENST00000490788 F8W735 103 aaPredicted RBP3.8□□□□□ -1.8
HMGB1-208ENST00000490788 SOX1O00570 391 aaPredicted RBP3.8□□□□□ -1.8
HMGB1-208ENST00000490788 GIPC1O14908 333 aa3.8□□□□□ -1.8
HMGB1-208ENST00000490788 DDX3YO15523 660 aaKnown RBP3.8□□□□□ -1.8
HMGB1-208ENST00000490788 IGHA2P01877 340 aa3.8□□□□□ -1.8
HMGB1-208ENST00000490788 ESRRAP11474 423 aaPredicted RBP3.8□□□□□ -1.8
HMGB1-208ENST00000490788 ERCC3P19447 782 aa3.8□□□□□ -1.8
HMGB1-208ENST00000490788 GSTT1P30711 240 aa3.8□□□□□ -1.8
HMGB1-208ENST00000490788 ITGAEP38570 1179 aa3.8□□□□□ -1.8
HMGB1-208ENST00000490788 PTPN12Q05209 780 aaKnown RBP3.8□□□□□ -1.8
HMGB1-208ENST00000490788 FMR1Q06787 632 aaKnown RBP eCLIP3.8□□□□□ -1.8
HMGB1-208ENST00000490788 GRM2Q14416 872 aa3.8□□□□□ -1.8
HMGB1-208ENST00000490788 LCE4AQ5TA78 99 aa3.8□□□□□ -1.8
HMGB1-208ENST00000490788 NUTM2GQ5VZR2 741 aa3.8□□□□□ -1.8
HMGB1-208ENST00000490788 PRPF40BQ6NWY9 871 aaKnown RBP3.8□□□□□ -1.8
HMGB1-208ENST00000490788 ADAMTSL4Q6UY14 1074 aa3.8□□□□□ -1.8
HMGB1-208ENST00000490788 ILDR2Q71H61 639 aa3.8□□□□□ -1.8
HMGB1-208ENST00000490788 ZC3HAV1Q7Z2W4 902 aaKnown RBP3.8□□□□□ -1.8
HMGB1-208ENST00000490788 SLC51AQ86UW1 340 aa3.8□□□□□ -1.8
HMGB1-208ENST00000490788 AGGF1Q8N302 714 aaeCLIP3.8□□□□□ -1.8
HMGB1-208ENST00000490788 FRMD6Q96NE9 622 aa3.8□□□□□ -1.8
HMGB1-208ENST00000490788 CORO1BQ9BR76 489 aa3.8□□□□□ -1.8
HMGB1-208ENST00000490788 RUSC1Q9BVN2 902 aa3.8□□□□□ -1.8
HMGB1-208ENST00000490788 BCO2Q9BYV7 579 aa3.8□□□□□ -1.8
HMGB1-208ENST00000490788 SRCIN1Q9C0H9 1055 aa3.8□□□□□ -1.8
HMGB1-208ENST00000490788 RNF208Q9H0X6 261 aa3.8□□□□□ -1.8
HMGB1-208ENST00000490788 GPN3Q9UHW5 284 aaPredicted RBP3.8□□□□□ -1.8
HMGB1-208ENST00000490788 CUX2O14529 1486 aa3.79□□□□□ -1.8
HMGB1-208ENST00000490788 GAS2O43903 313 aaKnown RBP3.79□□□□□ -1.8
HMGB1-208ENST00000490788 ALX3O95076 343 aa3.79□□□□□ -1.8
HMGB1-208ENST00000490788 P4HBP07237 508 aaKnown RBP3.79□□□□□ -1.8
HMGB1-208ENST00000490788 ITPKAP23677 461 aa3.79□□□□□ -1.8
HMGB1-208ENST00000490788 NOS3P29474 1203 aa3.79□□□□□ -1.8
HMGB1-208ENST00000490788 XPCQ01831 940 aaPredicted RBP3.79□□□□□ -1.8
HMGB1-208ENST00000490788 AP3B2Q13367 1082 aa3.79□□□□□ -1.8
HMGB1-208ENST00000490788 COL19A1Q14993 1142 aa3.79□□□□□ -1.8
HMGB1-208ENST00000490788 RPS26P11Q5JNZ5 115 aaPredicted RBP3.79□□□□□ -1.8
HMGB1-208ENST00000490788 TMCO4Q5TGY1 634 aa3.79□□□□□ -1.8
HMGB1-208ENST00000490788 ANKRD34AQ69YU3 496 aa3.79□□□□□ -1.8
HMGB1-208ENST00000490788 NXPE4Q6UWF7 544 aa3.79□□□□□ -1.8
HMGB1-208ENST00000490788 PI16Q6UXB8 463 aa3.79□□□□□ -1.8
HMGB1-208ENST00000490788 UBASH3BQ8TF42 649 aa3.79□□□□□ -1.8
HMGB1-208ENST00000490788 SSBP4Q9BWG4 385 aaPredicted RBP3.79□□□□□ -1.8
HMGB1-208ENST00000490788 ZNF576Q9H609 170 aa3.79□□□□□ -1.8
HMGB1-208ENST00000490788 CYP4F12Q9HCS2 524 aa3.79□□□□□ -1.8
HMGB1-208ENST00000490788 ABCB6Q9NP58 842 aa3.79□□□□□ -1.8
HMGB1-208ENST00000490788 RAD18Q9NS91 495 aa3.79□□□□□ -1.8
HMGB1-208ENST00000490788 RNF112Q9ULX5 631 aa3.79□□□□□ -1.8
HMGB1-208ENST00000490788 SAMM50Q9Y512 469 aa3.79□□□□□ -1.8
HMGB1-208ENST00000490788 DHX15O43143 795 aaKnown RBP3.78□□□□□ -1.8
HMGB1-208ENST00000490788 PRPF40AO75400 957 aaKnown RBP3.78□□□□□ -1.8
HMGB1-208ENST00000490788 WISP1O95388 367 aa3.78□□□□□ -1.8
HMGB1-208ENST00000490788 B3GALT4O96024 378 aa3.78□□□□□ -1.8
HMGB1-208ENST00000490788 EIF4BP23588 611 aaKnown RBP3.78□□□□□ -1.8
HMGB1-208ENST00000490788 ZNF157P51786 506 aaPredicted RBP3.78□□□□□ -1.8
HMGB1-208ENST00000490788 PDE3AQ14432 1141 aa3.78□□□□□ -1.8
HMGB1-208ENST00000490788 POU4F3Q15319 338 aa3.78□□□□□ -1.8
HMGB1-208ENST00000490788 C12orf50Q8NA57 414 aaPredicted RBP3.78□□□□□ -1.8
HMGB1-208ENST00000490788 FOXD4L4Q8WXT5 416 aaPredicted RBP3.78□□□□□ -1.8
HMGB1-208ENST00000490788 UTP4Q969X6 686 aaKnown RBP3.78□□□□□ -1.8
HMGB1-208ENST00000490788 CEP44Q9C0F1 390 aa3.78□□□□□ -1.8
HMGB1-208ENST00000490788 MRS2Q9HD23 443 aa3.78□□□□□ -1.8
HMGB1-208ENST00000490788 TMEM39AQ9NV64 488 aa3.78□□□□□ -1.8
HMGB1-208ENST00000490788 KCNK4Q9NYG8 393 aa3.78□□□□□ -1.8
HMGB1-208ENST00000490788 ADAM11O75078 769 aa3.77□□□□□ -1.81
HMGB1-208ENST00000490788 LMNB1P20700 586 aa3.77□□□□□ -1.81
HMGB1-208ENST00000490788 MAOBP27338 520 aa3.77□□□□□ -1.81
HMGB1-208ENST00000490788 RXRBP28702 533 aa3.77□□□□□ -1.81
HMGB1-208ENST00000490788 GNA15P30679 374 aa3.77□□□□□ -1.81
HMGB1-208ENST00000490788 USP11P51784 963 aa3.77□□□□□ -1.81
HMGB1-208ENST00000490788 PSMD2Q13200 908 aa3.77□□□□□ -1.81
HMGB1-208ENST00000490788 ZNF423Q2M1K9 1284 aa3.77□□□□□ -1.81
HMGB1-208ENST00000490788 UVSSAQ2YD98 709 aa3.77□□□□□ -1.81
HMGB1-208ENST00000490788 EXOSC6Q5RKV6 272 aaKnown RBP3.77□□□□□ -1.81
HMGB1-208ENST00000490788 HGSNATQ68CP4 663 aa3.77□□□□□ -1.81
HMGB1-208ENST00000490788 KIAA1211Q6ZU35 1233 aa3.77□□□□□ -1.81
HMGB1-208ENST00000490788 MEGF10Q96KG7 1140 aa3.77□□□□□ -1.81
HMGB1-208ENST00000490788 YIPF2Q9BWQ6 316 aa3.77□□□□□ -1.81
HMGB1-208ENST00000490788 EMILIN2Q9BXX0 1053 aa3.77□□□□□ -1.81
HMGB1-208ENST00000490788 KCNF1Q9H3M0 494 aa3.77□□□□□ -1.81
HMGB1-208ENST00000490788 C12orf49Q9H741 205 aa3.77□□□□□ -1.81
HMGB1-208ENST00000490788 FAM8A1Q9UBU6 413 aa3.77□□□□□ -1.81
HMGB1-208ENST00000490788 WWC3Q9ULE0 1092 aa3.77□□□□□ -1.81
HMGB1-208ENST00000490788 LOC100289279A0A1B0GTE1 492 aa3.76□□□□□ -1.81
HMGB1-208ENST00000490788 MEGF11A6BM72 1044 aa3.76□□□□□ -1.81
HMGB1-208ENST00000490788 ZNF326Q5BKZ1 582 aaKnown RBP3.76□□□□□ -1.81
HMGB1-208ENST00000490788 DIEXFQ68CQ4 756 aaKnown RBP3.76□□□□□ -1.81
HMGB1-208ENST00000490788 DZIP1LQ8IYY4 767 aaKnown RBP3.76□□□□□ -1.81
HMGB1-208ENST00000490788 SETDB2Q96T68 719 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms