RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 TMEM266Q2M3C6 531 aa12.62□□□□□ -0.39
HDAC6-228ENST00000486227 FLAD1Q8NFF5 587 aa12.62□□□□□ -0.39
HDAC6-228ENST00000486227 TCP11L1Q9NUJ3 509 aa12.62□□□□□ -0.39
HDAC6-228ENST00000486227 TRMT1Q9NXH9 659 aaKnown RBP12.62□□□□□ -0.39
HDAC6-228ENST00000486227 SYCP1Q15431 976 aa12.62□□□□□ -0.39
HDAC6-228ENST00000486227 BRINP3Q76B58 766 aa12.62□□□□□ -0.39
HDAC6-228ENST00000486227 RXRBP28702 533 aa12.62□□□□□ -0.39
HDAC6-228ENST00000486227 GTF2F1P35269 517 aaKnown RBP eCLIP12.62□□□□□ -0.392e-8■■■■■ 34.1
HDAC6-228ENST00000486227 GRM1Q13255 1194 aa12.62□□□□□ -0.39
HDAC6-228ENST00000486227 ZBTB38Q8NAP3 1195 aaPredicted RBP12.62□□□□□ -0.39
HDAC6-228ENST00000486227 ZSCAN12O43309 604 aa12.61□□□□□ -0.39
HDAC6-228ENST00000486227 MYCNP04198 464 aaPredicted RBP12.61□□□□□ -0.39
HDAC6-228ENST00000486227 QRICH2Q9H0J4 1663 aa12.61□□□□□ -0.39
HDAC6-228ENST00000486227 PCCAP05165 728 aaPredicted RBP12.61□□□□□ -0.39
HDAC6-228ENST00000486227 ZBTB1Q9Y2K1 713 aa12.61□□□□□ -0.39
HDAC6-228ENST00000486227 HEATR3Q7Z4Q2 680 aa12.61□□□□□ -0.39
HDAC6-228ENST00000486227 ZNF397Q8NF99 534 aaPredicted RBP12.61□□□□□ -0.39
HDAC6-228ENST00000486227 PUS3Q9BZE2 481 aaKnown RBP12.61□□□□□ -0.39
HDAC6-228ENST00000486227 DNAJC25Q9H1X3 360 aa12.61□□□□□ -0.39
HDAC6-228ENST00000486227 OSBPL3Q9H4L5 887 aa12.61□□□□□ -0.39
HDAC6-228ENST00000486227 TLR7Q9NYK1 1049 aaKnown RBP12.61□□□□□ -0.39
HDAC6-228ENST00000486227 CYP27B1O15528 508 aa12.6□□□□□ -0.39
HDAC6-228ENST00000486227 EPB41L2O43491 1005 aaKnown RBP12.6□□□□□ -0.39
HDAC6-228ENST00000486227 PRDM1O75626 825 aa12.6□□□□□ -0.39
HDAC6-228ENST00000486227 URI1O94763 535 aaPredicted RBP12.6□□□□□ -0.39
HDAC6-228ENST00000486227 IDEP14735 1019 aa12.6□□□□□ -0.39
HDAC6-228ENST00000486227 GNAQP50148 359 aa12.6□□□□□ -0.39
HDAC6-228ENST00000486227 ZNF532Q9HCE3 1301 aa12.6□□□□□ -0.39
HDAC6-228ENST00000486227 SNW1Q13573 536 aaKnown RBP12.6□□□□□ -0.39
HDAC6-228ENST00000486227 CCDC178Q5BJE1 867 aa12.6□□□□□ -0.39
HDAC6-228ENST00000486227 SPATA5Q8NB90 893 aa12.6□□□□□ -0.39
HDAC6-228ENST00000486227 CPLX3Q8WVH0 158 aa12.6□□□□□ -0.39
HDAC6-228ENST00000486227 SCLT1Q96NL6 688 aa12.6□□□□□ -0.39
HDAC6-228ENST00000486227 POLR3GO15318 223 aaPredicted RBP12.6□□□□□ -0.39
HDAC6-228ENST00000486227 TRAF1Q13077 416 aa12.6□□□□□ -0.39
HDAC6-228ENST00000486227 TMC6Q7Z403 805 aa12.6□□□□□ -0.39
HDAC6-228ENST00000486227 DBNLQ9UJU6 430 aaKnown RBP12.6□□□□□ -0.39
HDAC6-228ENST00000486227 ARHGEF40Q8TER5 1519 aa12.6□□□□□ -0.39
HDAC6-228ENST00000486227 CAMSAP1Q5T5Y3 1602 aa12.6□□□□□ -0.39
HDAC6-228ENST00000486227 LOC102724428A0A0B4J2F2 783 aa12.6□□□□□ -0.39
HDAC6-228ENST00000486227 AFMP43652 599 aa12.6□□□□□ -0.39
HDAC6-228ENST00000486227 SIK1P57059 783 aa12.6□□□□□ -0.39
HDAC6-228ENST00000486227 TRERF1Q96PN7 1200 aa12.6□□□□□ -0.39
HDAC6-228ENST00000486227 TM6SF1Q9BZW5 370 aa12.6□□□□□ -0.39
HDAC6-228ENST00000486227 SPATA31A3Q5VYP0 1347 aa12.6□□□□□ -0.39
HDAC6-228ENST00000486227 MAP3K15Q6ZN16 1313 aa12.6□□□□□ -0.39
HDAC6-228ENST00000486227 MROH5Q6ZUA9 1318 aa12.6□□□□□ -0.39
HDAC6-228ENST00000486227 CPSF1Q10570 1443 aaKnown RBP12.6□□□□□ -0.39
HDAC6-228ENST00000486227 UFL1O94874 794 aa12.59□□□□□ -0.39
HDAC6-228ENST00000486227 USP8P40818 1118 aa12.59□□□□□ -0.39
HDAC6-228ENST00000486227 GABPB1Q06547 395 aaPredicted RBP12.59□□□□□ -0.39
HDAC6-228ENST00000486227 OTUD7BQ6GQQ9 843 aa12.59□□□□□ -0.39
HDAC6-228ENST00000486227 ANGEL1Q9UNK9 670 aaKnown RBP12.59□□□□□ -0.39
HDAC6-228ENST00000486227 PTCH1Q13635 1447 aa12.59□□□□□ -0.39
HDAC6-228ENST00000486227 TRIM75PA6NK02 468 aa12.59□□□□□ -0.39
HDAC6-228ENST00000486227 GBP3Q9H0R5 595 aa12.59□□□□□ -0.39
HDAC6-228ENST00000486227 RDXP35241 583 aaKnown RBP12.59□□□□□ -0.39
HDAC6-228ENST00000486227 MATR3P43243 847 aaKnown RBP eCLIP12.59□□□□□ -0.39
HDAC6-228ENST00000486227 TYRO3Q06418 890 aa12.59□□□□□ -0.39
HDAC6-228ENST00000486227 ARHGAP29Q52LW3 1261 aa12.59□□□□□ -0.39
HDAC6-228ENST00000486227 PPP4R3AQ6IN85 833 aa12.59□□□□□ -0.39
HDAC6-228ENST00000486227 KANK3Q6NY19 840 aa12.59□□□□□ -0.39
HDAC6-228ENST00000486227 GIGYF2Q6Y7W6 1299 aaKnown RBP12.59□□□□□ -0.39
HDAC6-228ENST00000486227 PTPRMP28827 1452 aa12.59□□□□□ -0.39
HDAC6-228ENST00000486227 JAK2O60674 1132 aa12.59□□□□□ -0.39
HDAC6-228ENST00000486227 CALM1P0DP23 149 aa12.59□□□□□ -0.39
HDAC6-228ENST00000486227 CALM2P0DP24 149 aa12.59□□□□□ -0.39
HDAC6-228ENST00000486227 CALM3P0DP25 149 aa12.59□□□□□ -0.39
HDAC6-228ENST00000486227 IBSPP21815 317 aaPredicted RBP12.59□□□□□ -0.39
HDAC6-228ENST00000486227 HSP90AA4PQ58FG1 418 aa12.59□□□□□ -0.39
HDAC6-228ENST00000486227 MPHOSPH6Q99547 160 aaKnown RBP12.59□□□□□ -0.39
HDAC6-228ENST00000486227 HAUS7Q99871 368 aa12.59□□□□□ -0.39
HDAC6-228ENST00000486227 GREM2Q9H772 168 aa12.59□□□□□ -0.39
HDAC6-228ENST00000486227 IGSF3O75054 1194 aa12.58□□□□□ -0.4
HDAC6-228ENST00000486227 TMEM63CQ9P1W3 806 aa12.58□□□□□ -0.4
HDAC6-228ENST00000486227 GJA3Q9Y6H8 435 aa12.58□□□□□ -0.4
HDAC6-228ENST00000486227 ME3Q16798 604 aa12.58□□□□□ -0.4
HDAC6-228ENST00000486227 FAM196AQ6ZSG2 479 aa12.58□□□□□ -0.4
HDAC6-228ENST00000486227 CALML4Q96GE6 196 aa12.58□□□□□ -0.4
HDAC6-228ENST00000486227 TMEM87BQ96K49 555 aa12.58□□□□□ -0.4
HDAC6-228ENST00000486227 UBA5Q9GZZ9 404 aa12.58□□□□□ -0.4
HDAC6-228ENST00000486227 KIDINS220Q9ULH0 1771 aa12.58□□□□□ -0.4
HDAC6-228ENST00000486227 ADGRL3Q9HAR2 1447 aa12.58□□□□□ -0.4
HDAC6-228ENST00000486227 RTL9Q8NET4 1388 aa12.58□□□□□ -0.4
HDAC6-228ENST00000486227 SETD1BQ9UPS6 1966 aaKnown RBP12.58□□□□□ -0.4
HDAC6-228ENST00000486227 E7EWF7 191 aa12.58□□□□□ -0.4
HDAC6-228ENST00000486227 SLU7O95391 586 aaKnown RBP12.58□□□□□ -0.4
HDAC6-228ENST00000486227 TNNI2P48788 182 aa12.58□□□□□ -0.4
HDAC6-228ENST00000486227 RPS8P62241 208 aaKnown RBP12.58□□□□□ -0.4
HDAC6-228ENST00000486227 AXDND1Q5T1B0 1012 aaPredicted RBP12.58□□□□□ -0.4
HDAC6-228ENST00000486227 BRAPQ7Z569 592 aa12.58□□□□□ -0.4
HDAC6-228ENST00000486227 TXLNBQ8N3L3 684 aa12.58□□□□□ -0.4
HDAC6-228ENST00000486227 PAF1Q8N7H5 531 aa12.58□□□□□ -0.4
HDAC6-228ENST00000486227 LUC7LQ9NQ29 371 aaKnown RBP12.58□□□□□ -0.4
HDAC6-228ENST00000486227 RIOK3O14730 519 aaKnown RBP12.57□□□□□ -0.4
HDAC6-228ENST00000486227 BMP15O95972 392 aa12.57□□□□□ -0.4
HDAC6-228ENST00000486227 SKILP12757 684 aa12.57□□□□□ -0.4
HDAC6-228ENST00000486227 PTGS1P23219 599 aa12.57□□□□□ -0.4
HDAC6-228ENST00000486227 CTDSPL2Q05D32 466 aa12.57□□□□□ -0.4
HDAC6-228ENST00000486227 RASEFQ8IZ41 740 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms