RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 ZNF396Q96N95 335 aaPredicted RBP24.3■■□□□ 1.48
SDF4-206ENST00000478938 STK31Q9BXU1 1019 aa24.3■■□□□ 1.48
SDF4-206ENST00000478938 AARSP49588 968 aaKnown RBP eCLIP24.29■■□□□ 1.48
SDF4-206ENST00000478938 ILDR1Q86SU0 546 aaPredicted RBP24.29■■□□□ 1.48
SDF4-206ENST00000478938 MAP3K5Q99683 1374 aa24.29■■□□□ 1.48
SDF4-206ENST00000478938 STX10O60499 249 aa24.29■■□□□ 1.48
SDF4-206ENST00000478938 IRAK1P51617 712 aa24.29■■□□□ 1.48
SDF4-206ENST00000478938 TC2NQ8N9U0 490 aa24.29■■□□□ 1.48
SDF4-206ENST00000478938 NOA1Q8NC60 698 aaKnown RBP24.29■■□□□ 1.48
SDF4-206ENST00000478938 SAMM50Q9Y512 469 aa24.29■■□□□ 1.48
SDF4-206ENST00000478938 PPP1R3FQ6ZSY5 799 aaPredicted RBP24.28■■□□□ 1.48
SDF4-206ENST00000478938 ALDH8A1Q9H2A2 487 aaPredicted RBP24.28■■□□□ 1.48
SDF4-206ENST00000478938 VEZTQ9HBM0 779 aa24.28■■□□□ 1.48
SDF4-206ENST00000478938 H0YHG0 523 aa24.28■■□□□ 1.48
SDF4-206ENST00000478938 POLA2Q14181 598 aa24.28■■□□□ 1.48
SDF4-206ENST00000478938 SULT6B1Q6IMI4 303 aa24.28■■□□□ 1.48
SDF4-206ENST00000478938 JMYQ8N9B5 988 aa24.28■■□□□ 1.48
SDF4-206ENST00000478938 TACO1Q9BSH4 297 aaKnown RBP24.28■■□□□ 1.48
SDF4-206ENST00000478938 TSPYL4Q9UJ04 414 aa24.28■■□□□ 1.48
SDF4-206ENST00000478938 DIP2BQ9P265 1576 aa24.27■■□□□ 1.48
SDF4-206ENST00000478938 BCAS4Q8TDM0 211 aa24.27■■□□□ 1.48
SDF4-206ENST00000478938 SEC62Q99442 399 aaKnown RBP24.27■■□□□ 1.48
SDF4-206ENST00000478938 ABCC6O95255 1503 aa24.27■■□□□ 1.48
SDF4-206ENST00000478938 NF2P35240 595 aa24.27■■□□□ 1.48
SDF4-206ENST00000478938 RDXP35241 583 aaKnown RBP24.27■■□□□ 1.48
SDF4-206ENST00000478938 KIF4BQ2VIQ3 1234 aa24.27■■□□□ 1.48
SDF4-206ENST00000478938 C11orf91Q3C1V1 193 aa24.27■■□□□ 1.48
SDF4-206ENST00000478938 GDAP1L1Q96MZ0 367 aa24.27■■□□□ 1.48
SDF4-206ENST00000478938 HPCAL4Q9UM19 191 aa24.27■■□□□ 1.48
SDF4-206ENST00000478938 FNTAP49354 379 aa24.26■■□□□ 1.47
SDF4-206ENST00000478938 DDR1Q08345 913 aa24.26■■□□□ 1.47
SDF4-206ENST00000478938 ADALQ6DHV7 355 aa24.26■■□□□ 1.47
SDF4-206ENST00000478938 NAA16Q6N069 864 aaPredicted RBP24.26■■□□□ 1.47
SDF4-206ENST00000478938 LRRC2Q9BYS8 371 aa24.26■■□□□ 1.47
SDF4-206ENST00000478938 A0A0D9SFI3 127 aa24.26■■□□□ 1.47
SDF4-206ENST00000478938 MYL5Q02045 173 aa24.26■■□□□ 1.47
SDF4-206ENST00000478938 TBX2Q13207 712 aaPredicted RBP24.26■■□□□ 1.47
SDF4-206ENST00000478938 NME9Q86XW9 330 aa24.26■■□□□ 1.47
SDF4-206ENST00000478938 CDK19Q9BWU1 502 aa24.26■■□□□ 1.47
SDF4-206ENST00000478938 USP42Q9H9J4 1324 aaKnown RBP24.26■■□□□ 1.47
SDF4-206ENST00000478938 ZNF569Q5MCW4 686 aa24.25■■□□□ 1.47
SDF4-206ENST00000478938 SOWAHDA6NJG2 315 aa24.25■■□□□ 1.47
SDF4-206ENST00000478938 INHBEP58166 350 aa24.25■■□□□ 1.47
SDF4-206ENST00000478938 OS9Q13438 667 aaPredicted RBP24.25■■□□□ 1.47
SDF4-206ENST00000478938 Q6ZUG5 572 aa24.25■■□□□ 1.47
SDF4-206ENST00000478938 ZC3H4Q9UPT8 1303 aaKnown RBP24.25■■□□□ 1.47
SDF4-206ENST00000478938 ARHGEF10O15013 1369 aa24.25■■□□□ 1.47
SDF4-206ENST00000478938 CRB1P82279 1406 aa24.25■■□□□ 1.47
SDF4-206ENST00000478938 XRN1Q8IZH2 1706 aaKnown RBP24.25■■□□□ 1.47
SDF4-206ENST00000478938 CTAGE15A4D2H0 777 aa24.24■■□□□ 1.47
SDF4-206ENST00000478938 CTAGE8P0CG41 777 aa24.24■■□□□ 1.47
SDF4-206ENST00000478938 GCFC2P16383 781 aaKnown RBP24.24■■□□□ 1.47
SDF4-206ENST00000478938 CTAGE6Q86UF2 777 aa24.24■■□□□ 1.47
SDF4-206ENST00000478938 CTAGE4Q8IX94 777 aa24.24■■□□□ 1.47
SDF4-206ENST00000478938 GGCXP38435 758 aa24.24■■□□□ 1.47
SDF4-206ENST00000478938 FAM76AQ8TAV0 307 aa24.24■■□□□ 1.47
SDF4-206ENST00000478938 VIPAS39Q9H9C1 493 aa24.24■■□□□ 1.47
SDF4-206ENST00000478938 ZNF202O95125 648 aa24.23■■□□□ 1.47
SDF4-206ENST00000478938 CCDC175P0C221 793 aa24.23■■□□□ 1.47
SDF4-206ENST00000478938 PREPLQ4J6C6 727 aaPredicted RBP24.23■■□□□ 1.47
SDF4-206ENST00000478938 TEX11Q8IYF3 940 aa24.23■■□□□ 1.47
SDF4-206ENST00000478938 SMARCC2Q8TAQ2 1214 aa24.23■■□□□ 1.47
SDF4-206ENST00000478938 ECHDC1Q9NTX5 307 aa24.23■■□□□ 1.47
SDF4-206ENST00000478938 ODF2LQ9ULJ1 636 aa24.23■■□□□ 1.47
SDF4-206ENST00000478938 SHTN1A0MZ66 631 aa24.23■■□□□ 1.47
SDF4-206ENST00000478938 KIF3CO14782 793 aa24.23■■□□□ 1.47
SDF4-206ENST00000478938 KIF5CO60282 957 aa24.23■■□□□ 1.47
SDF4-206ENST00000478938 SF3A1Q15459 793 aaKnown RBP24.23■■□□□ 1.47
SDF4-206ENST00000478938 NUTM2FA1L443 756 aa24.22■■□□□ 1.47
SDF4-206ENST00000478938 CHUKO15111 745 aa24.22■■□□□ 1.47
SDF4-206ENST00000478938 NUTM2GQ5VZR2 741 aa24.22■■□□□ 1.47
SDF4-206ENST00000478938 NSUN7Q8NE18 718 aaKnown RBP24.22■■□□□ 1.47
SDF4-206ENST00000478938 EVI5LQ96CN4 794 aa24.22■■□□□ 1.47
SDF4-206ENST00000478938 XAGE2Q96GT9 111 aa24.22■■□□□ 1.47
SDF4-206ENST00000478938 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.22■■□□□ 1.47
SDF4-206ENST00000478938 A0A1W2PQ27 194 aa24.22■■□□□ 1.47
SDF4-206ENST00000478938 A0A1W2PQ64 194 aa24.22■■□□□ 1.47
SDF4-206ENST00000478938 A0A1W2PQD8 194 aa24.22■■□□□ 1.47
SDF4-206ENST00000478938 PTPDC1A2A3K4 754 aa24.22■■□□□ 1.47
SDF4-206ENST00000478938 AKAP17AQ02040 695 aaKnown RBP24.22■■□□□ 1.47
SDF4-206ENST00000478938 CLIC4Q9Y696 253 aa24.22■■□□□ 1.47
SDF4-206ENST00000478938 CALRP27797 417 aaKnown RBP24.21■■□□□ 1.47
SDF4-206ENST00000478938 GRIN2DO15399 1336 aa24.21■■□□□ 1.47
SDF4-206ENST00000478938 KIF13AQ9H1H9 1805 aa24.21■■□□□ 1.47
SDF4-206ENST00000478938 FRMD3A2A2Y4 597 aa24.21■■□□□ 1.47
SDF4-206ENST00000478938 PFKFB2O60825 505 aa24.21■■□□□ 1.47
SDF4-206ENST00000478938 CTDNEP1O95476 244 aa24.21■■□□□ 1.47
SDF4-206ENST00000478938 SARNPP82979 210 aaKnown RBP24.21■■□□□ 1.47
SDF4-206ENST00000478938 CALR3Q96L12 384 aaKnown RBP24.21■■□□□ 1.47
SDF4-206ENST00000478938 CTAGE9A4FU28 777 aa24.2■■□□□ 1.47
SDF4-206ENST00000478938 STIM1Q13586 685 aa24.2■■□□□ 1.47
SDF4-206ENST00000478938 STK38Q15208 465 aa24.2■■□□□ 1.47
SDF4-206ENST00000478938 ZNF589Q86UQ0 364 aaPredicted RBP24.2■■□□□ 1.47
SDF4-206ENST00000478938 SLC35F6Q8N357 371 aa24.2■■□□□ 1.47
SDF4-206ENST00000478938 RBM28Q9NW13 759 aaKnown RBP24.2■■□□□ 1.47
SDF4-206ENST00000478938 GNGT1P63211 74 aa24.2■■□□□ 1.46
SDF4-206ENST00000478938 ACTN3Q08043 901 aaPredicted RBP24.2■■□□□ 1.46
SDF4-206ENST00000478938 GOLGA6CA6NDK9 693 aa24.19■■□□□ 1.46
SDF4-206ENST00000478938 EIF3HO15372 352 aaKnown RBP eCLIP24.19■■□□□ 1.46
SDF4-206ENST00000478938 GOLGA6DP0CG33 693 aa24.19■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 146.8 ms