RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 UNCXA6NJT0 531 aa20.35■□□□□ 0.85
COL9A3-208ENST00000469802 SLC5A1P13866 664 aa20.35■□□□□ 0.85
COL9A3-208ENST00000469802 SUPT20HL1Q3ZLR7 823 aa20.35■□□□□ 0.85
COL9A3-208ENST00000469802 NBPF12Q5TAG4 269 aaPredicted RBP20.35■□□□□ 0.85
COL9A3-208ENST00000469802 SPRYD7Q5W111 196 aa20.35■□□□□ 0.85
COL9A3-208ENST00000469802 TDRD3Q9H7E2 651 aaKnown RBP20.35■□□□□ 0.85
COL9A3-208ENST00000469802 SUGT1Q9Y2Z0 365 aa20.35■□□□□ 0.85
COL9A3-208ENST00000469802 PPP1R12BO60237 982 aaPredicted RBP20.34■□□□□ 0.85
COL9A3-208ENST00000469802 FRAT2O75474 233 aaPredicted RBP20.34■□□□□ 0.85
COL9A3-208ENST00000469802 TRIM27P14373 513 aa20.34■□□□□ 0.85
COL9A3-208ENST00000469802 TEPSINQ96N21 525 aa20.34■□□□□ 0.85
COL9A3-208ENST00000469802 SIL1Q9H173 461 aa20.34■□□□□ 0.85
COL9A3-208ENST00000469802 COPRSQ9NQ92 184 aa20.34■□□□□ 0.85
COL9A3-208ENST00000469802 SREBF2Q12772 1141 aa20.33■□□□□ 0.85
COL9A3-208ENST00000469802 MTX1Q13505 466 aa20.33■□□□□ 0.85
COL9A3-208ENST00000469802 DGKZQ13574 1117 aa20.33■□□□□ 0.85
COL9A3-208ENST00000469802 ATP2B3Q16720 1220 aa20.33■□□□□ 0.85
COL9A3-208ENST00000469802 MIER1Q8N108 512 aa20.33■□□□□ 0.85
COL9A3-208ENST00000469802 CLMNQ96JQ2 1002 aa20.33■□□□□ 0.85
COL9A3-208ENST00000469802 ZDHHC15Q96MV8 337 aa20.33■□□□□ 0.85
COL9A3-208ENST00000469802 MRIQ9BWK5 157 aa20.33■□□□□ 0.85
COL9A3-208ENST00000469802 MAST3O60307 1309 aa20.32■□□□□ 0.84
COL9A3-208ENST00000469802 MYH2Q9UKX2 1941 aa20.32■□□□□ 0.84
COL9A3-208ENST00000469802 ZBTB22O15209 634 aa20.32■□□□□ 0.84
COL9A3-208ENST00000469802 ZBTB48P10074 688 aaPredicted RBP20.32■□□□□ 0.84
COL9A3-208ENST00000469802 IL15P40933 162 aaPredicted RBP20.32■□□□□ 0.84
COL9A3-208ENST00000469802 MKRN3Q13064 507 aaKnown RBP20.32■□□□□ 0.84
COL9A3-208ENST00000469802 CDAN1Q8IWY9 1227 aa20.32■□□□□ 0.84
COL9A3-208ENST00000469802 TEKT1Q969V4 418 aa20.32■□□□□ 0.84
COL9A3-208ENST00000469802 CFHR5Q9BXR6 569 aa20.32■□□□□ 0.84
COL9A3-208ENST00000469802 PA2G4Q9UQ80 394 aaKnown RBP20.32■□□□□ 0.84
COL9A3-208ENST00000469802 USP2O75604 605 aaPredicted RBP20.31■□□□□ 0.84
COL9A3-208ENST00000469802 BCAR3O75815 825 aa20.31■□□□□ 0.84
COL9A3-208ENST00000469802 GNAI3P08754 354 aa20.31■□□□□ 0.84
COL9A3-208ENST00000469802 NOM1Q5C9Z4 860 aaKnown RBP20.31■□□□□ 0.84
COL9A3-208ENST00000469802 ATF7IPQ6VMQ6 1270 aa20.31■□□□□ 0.84
COL9A3-208ENST00000469802 WNK4Q96J92 1243 aa20.31■□□□□ 0.84
COL9A3-208ENST00000469802 CEP126Q9P2H0 1117 aa20.31■□□□□ 0.84
COL9A3-208ENST00000469802 TNNQ9UQP3 1299 aa20.31■□□□□ 0.84
COL9A3-208ENST00000469802 IPO8O15397 1037 aaKnown RBP20.3■□□□□ 0.84
COL9A3-208ENST00000469802 IREB2P48200 963 aaKnown RBP20.3■□□□□ 0.84
COL9A3-208ENST00000469802 APOBEC3HQ6NTF7 200 aaKnown RBP20.3■□□□□ 0.84
COL9A3-208ENST00000469802 WDR66Q8TBY9 1149 aa20.3■□□□□ 0.84
COL9A3-208ENST00000469802 TMEM39BQ9GZU3 492 aa20.3■□□□□ 0.84
COL9A3-208ENST00000469802 RPAP1Q9BWH6 1393 aaPredicted RBP20.3■□□□□ 0.84
COL9A3-208ENST00000469802 TCP10L2B9ZVM9 353 aa20.29■□□□□ 0.84
COL9A3-208ENST00000469802 DIEXFQ68CQ4 756 aaKnown RBP20.29■□□□□ 0.84
COL9A3-208ENST00000469802 HHIPL2Q6UWX4 724 aa20.29■□□□□ 0.84
COL9A3-208ENST00000469802 ANKRD13AQ8IZ07 590 aa20.29■□□□□ 0.84
COL9A3-208ENST00000469802 SLC10A4Q96EP9 437 aa20.29■□□□□ 0.84
COL9A3-208ENST00000469802 DOCK2Q92608 1830 aa20.29■□□□□ 0.84
COL9A3-208ENST00000469802 SALL1Q9NSC2 1324 aa20.28■□□□□ 0.84
COL9A3-208ENST00000469802 MANSC4A6NHS7 340 aaPredicted RBP20.28■□□□□ 0.84
COL9A3-208ENST00000469802 TNNI2P48788 182 aa20.28■□□□□ 0.84
COL9A3-208ENST00000469802 HNRNPUQ00839 825 aaKnown RBP eCLIP20.28■□□□□ 0.84
COL9A3-208ENST00000469802 FKBP1CQ5VVH2 108 aa20.28■□□□□ 0.84
COL9A3-208ENST00000469802 CCDC85CA6NKD9 419 aa20.27■□□□□ 0.84
COL9A3-208ENST00000469802 SEMA3EO15041 775 aa20.27■□□□□ 0.84
COL9A3-208ENST00000469802 SRGAP3O43295 1099 aa20.27■□□□□ 0.84
COL9A3-208ENST00000469802 TBC1D8O95759 1140 aa20.27■□□□□ 0.84
COL9A3-208ENST00000469802 GJA5P36382 358 aa20.27■□□□□ 0.84
COL9A3-208ENST00000469802 PHKA1P46020 1223 aa20.27■□□□□ 0.84
COL9A3-208ENST00000469802 CACNB3P54284 484 aa20.27■□□□□ 0.84
COL9A3-208ENST00000469802 FAM83AQ86UY5 434 aa20.27■□□□□ 0.84
COL9A3-208ENST00000469802 AK9Q5TCS8 1911 aa20.26■□□□□ 0.83
COL9A3-208ENST00000469802 PRDX5P30044 214 aa20.26■□□□□ 0.83
COL9A3-208ENST00000469802 ADORA1P30542 326 aa20.26■□□□□ 0.83
COL9A3-208ENST00000469802 INHBEP58166 350 aa20.26■□□□□ 0.83
COL9A3-208ENST00000469802 CTU1Q7Z7A3 348 aaKnown RBP20.26■□□□□ 0.83
COL9A3-208ENST00000469802 ZNF296Q8WUU4 475 aaPredicted RBP20.26■□□□□ 0.83
COL9A3-208ENST00000469802 FRAT1Q92837 279 aaPredicted RBP20.26■□□□□ 0.83
COL9A3-208ENST00000469802 GNL3LQ9NVN8 582 aaKnown RBP20.26■□□□□ 0.83
COL9A3-208ENST00000469802 PDS5AQ29RF7 1337 aaKnown RBP20.26■□□□□ 0.83
COL9A3-208ENST00000469802 GPR25O00155 361 aa20.25■□□□□ 0.83
COL9A3-208ENST00000469802 ALDH1A1P00352 501 aa20.25■□□□□ 0.83
COL9A3-208ENST00000469802 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.25■□□□□ 0.83
COL9A3-208ENST00000469802 IFNL1Q8IU54 200 aa20.25■□□□□ 0.83
COL9A3-208ENST00000469802 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.25■□□□□ 0.83
COL9A3-208ENST00000469802 DENND2AQ9ULE3 1009 aa20.25■□□□□ 0.83
COL9A3-208ENST00000469802 DAGLAQ9Y4D2 1042 aa20.25■□□□□ 0.83
COL9A3-208ENST00000469802 IGF2BP3O00425 579 aaKnown RBP eCLIP20.24■□□□□ 0.83
COL9A3-208ENST00000469802 ZKSCAN2Q63HK3 967 aa20.24■□□□□ 0.83
COL9A3-208ENST00000469802 CCDC102BQ68D86 513 aa20.24■□□□□ 0.83
COL9A3-208ENST00000469802 CLUAP1Q96AJ1 413 aa20.24■□□□□ 0.83
COL9A3-208ENST00000469802 R3HDMLQ9H3Y0 253 aa20.24■□□□□ 0.83
COL9A3-208ENST00000469802 TMOD2Q9NZR1 351 aa20.24■□□□□ 0.83
COL9A3-208ENST00000469802 GNAI2P04899 355 aa20.23■□□□□ 0.83
COL9A3-208ENST00000469802 RGS19P49795 217 aa20.23■□□□□ 0.83
COL9A3-208ENST00000469802 VGLL4Q14135 290 aa20.23■□□□□ 0.83
COL9A3-208ENST00000469802 DIXDC1Q155Q3 683 aa20.23■□□□□ 0.83
COL9A3-208ENST00000469802 TMEM57Q8N5G2 664 aa20.23■□□□□ 0.83
COL9A3-208ENST00000469802 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.23■□□□□ 0.83
COL9A3-208ENST00000469802 MAST2Q6P0Q8 1798 aa20.23■□□□□ 0.83
COL9A3-208ENST00000469802 ZBED9Q6R2W3 1325 aa20.23■□□□□ 0.83
COL9A3-208ENST00000469802 PNMA6EA0A0J9YXQ4 647 aa20.22■□□□□ 0.83
COL9A3-208ENST00000469802 A0A1B0GUL7 405 aa20.22■□□□□ 0.83
COL9A3-208ENST00000469802 TESPA1A2RU30 521 aaPredicted RBP20.22■□□□□ 0.83
COL9A3-208ENST00000469802 TFCP2Q12800 502 aa20.22■□□□□ 0.83
COL9A3-208ENST00000469802 RASGRF1Q13972 1273 aa20.22■□□□□ 0.83
COL9A3-208ENST00000469802 OPTNQ96CV9 577 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms