RNA–Protein interactions for RNA: ENST00000468253.1

NPHP4-206, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 781 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-206ENST00000468253 TRAF5O00463 557 aa24.55■■□□□ 1.52
NPHP4-206ENST00000468253 TTC39AQ5SRH9 613 aa24.55■■□□□ 1.52
NPHP4-206ENST00000468253 AACSQ86V21 672 aa24.55■■□□□ 1.52
NPHP4-206ENST00000468253 TEKT1Q969V4 418 aa24.55■■□□□ 1.52
NPHP4-206ENST00000468253 ZDHHC15Q96MV8 337 aa24.55■■□□□ 1.52
NPHP4-206ENST00000468253 LRRCC1Q9C099 1032 aa24.55■■□□□ 1.52
NPHP4-206ENST00000468253 RBM5P52756 815 aaKnown RBP eCLIP24.54■■□□□ 1.52
NPHP4-206ENST00000468253 CST9Q5W186 159 aa24.54■■□□□ 1.52
NPHP4-206ENST00000468253 APOBEC3FQ8IUX4 373 aaKnown RBP24.54■■□□□ 1.52
NPHP4-206ENST00000468253 IL1RAPL2Q9NP60 686 aa24.54■■□□□ 1.52
NPHP4-206ENST00000468253 ZNF646O15015 1829 aaPredicted RBP24.54■■□□□ 1.52
NPHP4-206ENST00000468253 MCAMP43121 646 aa24.53■■□□□ 1.52
NPHP4-206ENST00000468253 HDAC1Q13547 482 aaPredicted RBP24.53■■□□□ 1.52
NPHP4-206ENST00000468253 FAM163AQ96GL9 167 aaPredicted RBP24.53■■□□□ 1.52
NPHP4-206ENST00000468253 APBB1O00213 710 aa24.52■■□□□ 1.52
NPHP4-206ENST00000468253 IFIT2P09913 472 aaKnown RBP24.52■■□□□ 1.52
NPHP4-206ENST00000468253 SLF2Q8IX21 1173 aa24.52■■□□□ 1.52
NPHP4-206ENST00000468253 DNAJC5GQ8N7S2 189 aa24.52■■□□□ 1.52
NPHP4-206ENST00000468253 COL1A1P02452 1464 aaPredicted RBP24.51■■□□□ 1.51
NPHP4-206ENST00000468253 PRDX5P30044 214 aa24.51■■□□□ 1.51
NPHP4-206ENST00000468253 APOBEC3HQ6NTF7 200 aaKnown RBP24.51■■□□□ 1.51
NPHP4-206ENST00000468253 TLR7Q9NYK1 1049 aaKnown RBP24.51■■□□□ 1.51
NPHP4-206ENST00000468253 ABCF2Q9UG63 623 aa24.51■■□□□ 1.51
NPHP4-206ENST00000468253 PCDHAC2Q9Y5I4 1007 aa24.51■■□□□ 1.51
NPHP4-206ENST00000468253 CELF2O95319 508 aaKnown RBP24.5■■□□□ 1.51
NPHP4-206ENST00000468253 FMR1Q06787 632 aaKnown RBP eCLIP24.5■■□□□ 1.51
NPHP4-206ENST00000468253 SPDYE2Q495Y8 402 aa24.5■■□□□ 1.51
NPHP4-206ENST00000468253 ERICH6Q7L0X2 663 aa24.5■■□□□ 1.51
NPHP4-206ENST00000468253 EXOC6Q8TAG9 804 aa24.5■■□□□ 1.51
NPHP4-206ENST00000468253 ADM5C9JUS6 153 aa24.49■■□□□ 1.51
NPHP4-206ENST00000468253 FKBP1CQ5VVH2 108 aa24.49■■□□□ 1.51
NPHP4-206ENST00000468253 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.49■■□□□ 1.51
NPHP4-206ENST00000468253 ZNF70Q9UC06 446 aaPredicted RBP24.49■■□□□ 1.51
NPHP4-206ENST00000468253 PPP2R3BQ9Y5P8 575 aa24.49■■□□□ 1.51
NPHP4-206ENST00000468253 DEFB129Q9H1M3 183 aa24.48■■□□□ 1.51
NPHP4-206ENST00000468253 TNFAIP1Q13829 316 aa24.47■■□□□ 1.51
NPHP4-206ENST00000468253 PI16Q6UXB8 463 aa24.47■■□□□ 1.51
NPHP4-206ENST00000468253 GCC1Q96CN9 775 aa24.47■■□□□ 1.51
NPHP4-206ENST00000468253 CDCA5Q96FF9 252 aa24.47■■□□□ 1.51
NPHP4-206ENST00000468253 RWDD1Q9H446 243 aaPredicted RBP24.47■■□□□ 1.51
NPHP4-206ENST00000468253 TDRD3Q9H7E2 651 aaKnown RBP24.47■■□□□ 1.51
NPHP4-206ENST00000468253 ARAP2Q8WZ64 1704 aa24.47■■□□□ 1.51
NPHP4-206ENST00000468253 CYP2E1P05181 493 aaPredicted RBP24.46■■□□□ 1.51
NPHP4-206ENST00000468253 LDHCP07864 332 aa24.46■■□□□ 1.51
NPHP4-206ENST00000468253 GSTO1P78417 241 aa24.46■■□□□ 1.51
NPHP4-206ENST00000468253 HTRA3P83110 453 aa24.46■■□□□ 1.51
NPHP4-206ENST00000468253 TMED8Q6PL24 325 aaPredicted RBP24.46■■□□□ 1.51
NPHP4-206ENST00000468253 DLK2Q6UY11 383 aa24.46■■□□□ 1.51
NPHP4-206ENST00000468253 TBC1D9Q6ZT07 1266 aa24.46■■□□□ 1.51
NPHP4-206ENST00000468253 SNRKQ9NRH2 765 aa24.46■■□□□ 1.51
NPHP4-206ENST00000468253 LRP2BPQ9P2M1 347 aa24.46■■□□□ 1.51
NPHP4-206ENST00000468253 CEP350Q5VT06 3117 aa24.46■■□□□ 1.51
NPHP4-206ENST00000468253 CLRN2A0PK11 232 aa24.45■■□□□ 1.5
NPHP4-206ENST00000468253 ZAP70P43403 619 aa24.45■■□□□ 1.5
NPHP4-206ENST00000468253 FKBP1BP68106 108 aa24.45■■□□□ 1.5
NPHP4-206ENST00000468253 DZIP1Q86YF9 867 aaKnown RBP24.45■■□□□ 1.5
NPHP4-206ENST00000468253 C2orf69Q8N8R5 385 aa24.45■■□□□ 1.5
NPHP4-206ENST00000468253 HHIPL1Q96JK4 782 aa24.45■■□□□ 1.5
NPHP4-206ENST00000468253 DAGLAQ9Y4D2 1042 aa24.45■■□□□ 1.5
NPHP4-206ENST00000468253 TLL2Q9Y6L7 1015 aa24.45■■□□□ 1.5
NPHP4-206ENST00000468253 GAKO14976 1311 aa24.44■■□□□ 1.5
NPHP4-206ENST00000468253 AOX1Q06278 1338 aa24.44■■□□□ 1.5
NPHP4-206ENST00000468253 RASSF10A6NK89 507 aa24.44■■□□□ 1.5
NPHP4-206ENST00000468253 ATP5JP18859 108 aa24.44■■□□□ 1.5
NPHP4-206ENST00000468253 MECOMQ03112 1051 aa24.44■■□□□ 1.5
NPHP4-206ENST00000468253 DIXDC1Q155Q3 683 aa24.44■■□□□ 1.5
NPHP4-206ENST00000468253 NSUN4Q96CB9 384 aaKnown RBP24.44■■□□□ 1.5
NPHP4-206ENST00000468253 VEZTQ9HBM0 779 aa24.44■■□□□ 1.5
NPHP4-206ENST00000468253 SMARCA5O60264 1052 aaPredicted RBP24.43■■□□□ 1.5
NPHP4-206ENST00000468253 MAP4K4O95819 1239 aaPredicted RBP24.43■■□□□ 1.5
NPHP4-206ENST00000468253 TNNI2P48788 182 aa24.43■■□□□ 1.5
NPHP4-206ENST00000468253 DEFB115Q30KQ5 88 aa24.43■■□□□ 1.5
NPHP4-206ENST00000468253 SAPCD2Q86UD0 394 aa24.43■■□□□ 1.5
NPHP4-206ENST00000468253 KLRG1Q96E93 195 aa24.43■■□□□ 1.5
NPHP4-206ENST00000468253 GBA2Q9HCG7 927 aaPredicted RBP24.43■■□□□ 1.5
NPHP4-206ENST00000468253 RAI14Q9P0K7 980 aa24.43■■□□□ 1.5
NPHP4-206ENST00000468253 GPR75-ASB3A0A0A6YYF3 556 aa24.42■■□□□ 1.5
NPHP4-206ENST00000468253 NF2P35240 595 aa24.42■■□□□ 1.5
NPHP4-206ENST00000468253 RASA3Q14644 834 aa24.42■■□□□ 1.5
NPHP4-206ENST00000468253 SUPT20HL1Q3ZLR7 823 aa24.42■■□□□ 1.5
NPHP4-206ENST00000468253 FAM83AQ86UY5 434 aa24.42■■□□□ 1.5
NPHP4-206ENST00000468253 ZNF408Q9H9D4 720 aa24.42■■□□□ 1.5
NPHP4-206ENST00000468253 TMOD2Q9NZR1 351 aa24.42■■□□□ 1.5
NPHP4-206ENST00000468253 ABT1Q9ULW3 272 aaKnown RBP24.42■■□□□ 1.5
NPHP4-206ENST00000468253 POLR2AP24928 1970 aaKnown RBP24.42■■□□□ 1.5
NPHP4-206ENST00000468253 TTF1Q15361 905 aaPredicted RBP24.41■■□□□ 1.5
NPHP4-206ENST00000468253 CDC42EP5Q6NZY7 148 aa24.41■■□□□ 1.5
NPHP4-206ENST00000468253 ZNF384Q8TF68 577 aa24.41■■□□□ 1.5
NPHP4-206ENST00000468253 SCAF8Q9UPN6 1271 aaKnown RBP24.41■■□□□ 1.5
NPHP4-206ENST00000468253 PRAMEF18Q5VWM3 479 aa24.4■■□□□ 1.5
NPHP4-206ENST00000468253 USP40Q9NVE5 1235 aa24.4■■□□□ 1.5
NPHP4-206ENST00000468253 MROH7-TTC4A0A0A0MT08 1334 aa24.39■■□□□ 1.5
NPHP4-206ENST00000468253 PIH1D3Q9NQM4 214 aaKnown RBP24.39■■□□□ 1.49
NPHP4-206ENST00000468253 ECHDC1Q9NTX5 307 aa24.39■■□□□ 1.49
NPHP4-206ENST00000468253 CNTNAP1P78357 1384 aa24.39■■□□□ 1.49
NPHP4-206ENST00000468253 TCP10L2B9ZVM9 353 aa24.38■■□□□ 1.49
NPHP4-206ENST00000468253 SMC5Q8IY18 1101 aa24.38■■□□□ 1.49
NPHP4-206ENST00000468253 GPATCH3Q96I76 525 aa24.38■■□□□ 1.49
NPHP4-206ENST00000468253 HAUS7Q99871 368 aa24.38■■□□□ 1.49
NPHP4-206ENST00000468253 IDI2Q9BXS1 227 aa24.38■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 101.2 ms