RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 TEX11Q8IYF3 940 aa20.63■□□□□ 0.89
COL18A1-204ENST00000400337 IQUBQ8NA54 791 aa20.63■□□□□ 0.89
COL18A1-204ENST00000400337 CCNL1Q9UK58 526 aaPredicted RBP20.63■□□□□ 0.89
COL18A1-204ENST00000400337 LMTK3Q96Q04 1460 aa20.62■□□□□ 0.89
COL18A1-204ENST00000400337 TAF5LO75529 589 aa20.62■□□□□ 0.89
COL18A1-204ENST00000400337 DNAJC10Q8IXB1 793 aa20.62■□□□□ 0.89
COL18A1-204ENST00000400337 SPDYE4A6NLX3 237 aa20.62■□□□□ 0.89
COL18A1-204ENST00000400337 ZNF174Q15697 407 aa20.62■□□□□ 0.89
COL18A1-204ENST00000400337 TTC6Q86TZ1 520 aa20.62■□□□□ 0.89
COL18A1-204ENST00000400337 CDCA7Q9BWT1 371 aaPredicted RBP20.62■□□□□ 0.89
COL18A1-204ENST00000400337 ARID5AQ03989 594 aa20.62■□□□□ 0.89
COL18A1-204ENST00000400337 USP37Q86T82 979 aa20.62■□□□□ 0.89
COL18A1-204ENST00000400337 KBTBD3Q8NAB2 608 aa20.62■□□□□ 0.89
COL18A1-204ENST00000400337 TMEM87BQ96K49 555 aa20.62■□□□□ 0.89
COL18A1-204ENST00000400337 VWA3AA6NCI4 1184 aa20.62■□□□□ 0.89
COL18A1-204ENST00000400337 PARP1P09874 1014 aaKnown RBP20.62■□□□□ 0.89
COL18A1-204ENST00000400337 BLMP54132 1417 aaPredicted RBP20.62■□□□□ 0.89
COL18A1-204ENST00000400337 ATL3Q6DD88 541 aa20.62■□□□□ 0.89
COL18A1-204ENST00000400337 BMS1Q14692 1282 aaKnown RBP20.61■□□□□ 0.89
COL18A1-204ENST00000400337 RBM17Q96I25 401 aaKnown RBP20.61■□□□□ 0.89
COL18A1-204ENST00000400337 UFL1O94874 794 aa20.61■□□□□ 0.89
COL18A1-204ENST00000400337 CCDC175P0C221 793 aa20.61■□□□□ 0.89
COL18A1-204ENST00000400337 CTAGE15A4D2H0 777 aa20.61■□□□□ 0.89
COL18A1-204ENST00000400337 CTAGE8P0CG41 777 aa20.61■□□□□ 0.89
COL18A1-204ENST00000400337 CTAGE6Q86UF2 777 aa20.61■□□□□ 0.89
COL18A1-204ENST00000400337 CTAGE4Q8IX94 777 aa20.61■□□□□ 0.89
COL18A1-204ENST00000400337 ARHGEF10O15013 1369 aa20.61■□□□□ 0.89
COL18A1-204ENST00000400337 FAM173BQ6P4H8 233 aa20.61■□□□□ 0.89
COL18A1-204ENST00000400337 CALRP27797 417 aaKnown RBP20.6■□□□□ 0.89
COL18A1-204ENST00000400337 UBXN1Q04323 297 aa20.6■□□□□ 0.89
COL18A1-204ENST00000400337 CKAP4Q07065 602 aaKnown RBP20.6■□□□□ 0.89
COL18A1-204ENST00000400337 PRDM1O75626 825 aa20.6■□□□□ 0.89
COL18A1-204ENST00000400337 FAM160A1Q05DH4 1040 aa20.6■□□□□ 0.89
COL18A1-204ENST00000400337 KIAA0753Q2KHM9 967 aa20.6■□□□□ 0.89
COL18A1-204ENST00000400337 ANGEL1Q9UNK9 670 aaKnown RBP20.6■□□□□ 0.89
COL18A1-204ENST00000400337 BICDL2A1A5D9 508 aa20.6■□□□□ 0.89
COL18A1-204ENST00000400337 TMEM2Q9UHN6 1383 aa20.59■□□□□ 0.89
COL18A1-204ENST00000400337 PHACTR2O75167 634 aa20.59■□□□□ 0.89
COL18A1-204ENST00000400337 PLS1Q14651 629 aa20.59■□□□□ 0.89
COL18A1-204ENST00000400337 LETM2Q2VYF4 491 aa20.59■□□□□ 0.89
COL18A1-204ENST00000400337 ELP1O95163 1332 aa20.59■□□□□ 0.89
COL18A1-204ENST00000400337 SMC1AQ14683 1233 aaKnown RBP20.59■□□□□ 0.89
COL18A1-204ENST00000400337 JDP2Q8WYK2 163 aa20.59■□□□□ 0.89
COL18A1-204ENST00000400337 DTNBO60941 627 aa20.59■□□□□ 0.89
COL18A1-204ENST00000400337 FAM13AO94988 1023 aa20.59■□□□□ 0.89
COL18A1-204ENST00000400337 RILPL1Q5EBL4 403 aa20.59■□□□□ 0.89
COL18A1-204ENST00000400337 DEXIO95424 95 aa20.58■□□□□ 0.89
COL18A1-204ENST00000400337 CCDC42Q96M95 316 aa20.58■□□□□ 0.89
COL18A1-204ENST00000400337 KIAA0232Q92628 1395 aa20.58■□□□□ 0.89
COL18A1-204ENST00000400337 TACC1O75410 805 aa20.58■□□□□ 0.89
COL18A1-204ENST00000400337 GTF2F1P35269 517 aaKnown RBP eCLIP20.58■□□□□ 0.897e-7■■■■□ 26.2
COL18A1-204ENST00000400337 OTUD7BQ6GQQ9 843 aa20.58■□□□□ 0.88
COL18A1-204ENST00000400337 LPIN2Q92539 896 aa20.58■□□□□ 0.88
COL18A1-204ENST00000400337 CCDC87Q9NVE4 849 aa20.58■□□□□ 0.88
COL18A1-204ENST00000400337 MRVI1Q9Y6F6 885 aa20.58■□□□□ 0.88
COL18A1-204ENST00000400337 PBRM1Q86U86 1689 aa20.58■□□□□ 0.88
COL18A1-204ENST00000400337 LLPHQ9BRT6 129 aaKnown RBP20.57■□□□□ 0.88
COL18A1-204ENST00000400337 TCHPQ9BT92 498 aa20.57■□□□□ 0.88
COL18A1-204ENST00000400337 GOLGA6L10A0A0M3HER8 536 aa20.57■□□□□ 0.88
COL18A1-204ENST00000400337 LTKP29376 864 aa20.57■□□□□ 0.88
COL18A1-204ENST00000400337 UBE4AQ14139 1066 aa20.57■□□□□ 0.88
COL18A1-204ENST00000400337 V9GY48 417 aaPredicted RBP20.57■□□□□ 0.88
COL18A1-204ENST00000400337 KCNQ3O43525 872 aa20.57■□□□□ 0.88
COL18A1-204ENST00000400337 KIF5AQ12840 1032 aa20.57■□□□□ 0.88
COL18A1-204ENST00000400337 KRT83P78385 493 aa20.57■□□□□ 0.88
COL18A1-204ENST00000400337 ANO1Q5XXA6 986 aa20.57■□□□□ 0.88
COL18A1-204ENST00000400337 GPCPD1Q9NPB8 672 aa20.57■□□□□ 0.88
COL18A1-204ENST00000400337 RNF187Q5TA31 235 aaPredicted RBP20.56■□□□□ 0.88
COL18A1-204ENST00000400337 SYNCQ9H7C4 482 aa20.56■□□□□ 0.88
COL18A1-204ENST00000400337 ZAP70P43403 619 aa20.56■□□□□ 0.88
COL18A1-204ENST00000400337 HS2ST1Q7LGA3 356 aa20.56■□□□□ 0.88
COL18A1-204ENST00000400337 IL17REQ8NFR9 667 aa20.56■□□□□ 0.88
COL18A1-204ENST00000400337 MYL5Q02045 173 aa20.56■□□□□ 0.88
COL18A1-204ENST00000400337 CCDC24Q8N4L8 307 aa20.56■□□□□ 0.88
COL18A1-204ENST00000400337 PLVAPQ9BX97 442 aa20.56■□□□□ 0.88
COL18A1-204ENST00000400337 NOL12Q9UGY1 213 aaKnown RBP eCLIP20.56■□□□□ 0.881e-7■■□□□ 13.5
COL18A1-204ENST00000400337 V9GYY5 206 aaPredicted RBP20.56■□□□□ 0.88
COL18A1-204ENST00000400337 CTAGE9A4FU28 777 aa20.56■□□□□ 0.88
COL18A1-204ENST00000400337 NEURL1BA8MQ27 555 aa20.56■□□□□ 0.88
COL18A1-204ENST00000400337 KARSQ15046 597 aaKnown RBP20.56■□□□□ 0.88
COL18A1-204ENST00000400337 ZBTB21Q9ULJ3 1066 aa20.56■□□□□ 0.88
COL18A1-204ENST00000400337 INSRP06213 1382 aa20.56■□□□□ 0.88
COL18A1-204ENST00000400337 ABCA5Q8WWZ7 1642 aa20.56■□□□□ 0.88
COL18A1-204ENST00000400337 CEP170Q5SW79 1584 aa20.56■□□□□ 0.88
COL18A1-204ENST00000400337 KRT86O43790 486 aa20.56■□□□□ 0.88
COL18A1-204ENST00000400337 LZTFL1Q9NQ48 299 aa20.56■□□□□ 0.88
COL18A1-204ENST00000400337 EIF6P56537 245 aaKnown RBP20.55■□□□□ 0.88
COL18A1-204ENST00000400337 RGS22Q8NE09 1264 aa20.55■□□□□ 0.88
COL18A1-204ENST00000400337 NEK11Q8NG66 645 aa20.55■□□□□ 0.88
COL18A1-204ENST00000400337 AATFQ9NY61 560 aaKnown RBP eCLIP20.55■□□□□ 0.885e-6■■■■■ 44.3
COL18A1-204ENST00000400337 LMAN1P49257 510 aa20.55■□□□□ 0.88
COL18A1-204ENST00000400337 ARFGAP3Q9NP61 516 aa20.55■□□□□ 0.88
COL18A1-204ENST00000400337 ACTN2P35609 894 aa20.55■□□□□ 0.88
COL18A1-204ENST00000400337 PIK3AP1Q6ZUJ8 805 aa20.55■□□□□ 0.88
COL18A1-204ENST00000400337 MYL10Q9BUA6 226 aa20.55■□□□□ 0.88
COL18A1-204ENST00000400337 GUCA1BQ9UMX6 200 aa20.55■□□□□ 0.88
COL18A1-204ENST00000400337 CTDSPL2Q05D32 466 aa20.54■□□□□ 0.88
COL18A1-204ENST00000400337 USP44Q9H0E7 712 aa20.54■□□□□ 0.88
COL18A1-204ENST00000400337 GGA1Q9UJY5 639 aa20.54■□□□□ 0.88
COL18A1-204ENST00000400337 ABCC4O15439 1325 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms