RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 BEND4Q6ZU67 534 aa6.08□□□□□ -1.44
HMGB1-204ENST00000399489 MRRFQ96E11 262 aaKnown RBP6.08□□□□□ -1.44
HMGB1-204ENST00000399489 POLR3GLQ9BT43 218 aa6.08□□□□□ -1.44
HMGB1-204ENST00000399489 USP26Q9BXU7 913 aa6.08□□□□□ -1.44
HMGB1-204ENST00000399489 MEGF11A6BM72 1044 aa6.08□□□□□ -1.44
HMGB1-204ENST00000399489 EREGO14944 169 aa6.08□□□□□ -1.44
HMGB1-204ENST00000399489 TRPA1O75762 1119 aa6.08□□□□□ -1.44
HMGB1-204ENST00000399489 TGFB1P01137 390 aa6.08□□□□□ -1.44
HMGB1-204ENST00000399489 RXRBP28702 533 aa6.08□□□□□ -1.44
HMGB1-204ENST00000399489 ADAMTSL4Q6UY14 1074 aa6.08□□□□□ -1.44
HMGB1-204ENST00000399489 ZKSCAN3Q9BRR0 538 aa6.08□□□□□ -1.44
HMGB1-204ENST00000399489 SOX17Q9H6I2 414 aaPredicted RBP6.08□□□□□ -1.44
HMGB1-204ENST00000399489 GNEQ9Y223 722 aaKnown RBP6.08□□□□□ -1.44
HMGB1-204ENST00000399489 HMX2A2RU54 273 aa6.07□□□□□ -1.44
HMGB1-204ENST00000399489 TM4SF5O14894 197 aa6.07□□□□□ -1.44
HMGB1-204ENST00000399489 PREPP48147 710 aa6.07□□□□□ -1.44
HMGB1-204ENST00000399489 MTMR3Q13615 1198 aa6.07□□□□□ -1.44
HMGB1-204ENST00000399489 HP1BP3Q5SSJ5 553 aaPredicted RBP6.07□□□□□ -1.44
HMGB1-204ENST00000399489 ZDHHC13Q8IUH4 622 aa6.07□□□□□ -1.44
HMGB1-204ENST00000399489 C12orf50Q8NA57 414 aaPredicted RBP6.07□□□□□ -1.44
HMGB1-204ENST00000399489 YIPF2Q9BWQ6 316 aa6.07□□□□□ -1.44
HMGB1-204ENST00000399489 ATG3Q9NT62 314 aa6.07□□□□□ -1.44
HMGB1-204ENST00000399489 DDX54Q8TDD1 881 aaKnown RBP6.06□□□□□ -1.44
HMGB1-204ENST00000399489 SPATA32Q96LK8 384 aa6.06□□□□□ -1.44
HMGB1-204ENST00000399489 HHIPQ96QV1 700 aa6.06□□□□□ -1.44
HMGB1-204ENST00000399489 BHLHE41Q9C0J9 482 aaPredicted RBP6.06□□□□□ -1.44
HMGB1-204ENST00000399489 ZFYVE1Q9HBF4 777 aa6.06□□□□□ -1.44
HMGB1-204ENST00000399489 KIAA1324LA8MWY0 1029 aaPredicted RBP6.05□□□□□ -1.44
HMGB1-204ENST00000399489 SOX1O00570 391 aaPredicted RBP6.05□□□□□ -1.44
HMGB1-204ENST00000399489 SMARCA5O60264 1052 aaPredicted RBP6.05□□□□□ -1.44
HMGB1-204ENST00000399489 USP11P51784 963 aa6.05□□□□□ -1.44
HMGB1-204ENST00000399489 FOXD3Q9UJU5 478 aaPredicted RBP6.05□□□□□ -1.44
HMGB1-204ENST00000399489 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.05□□□□□ -1.44
HMGB1-204ENST00000399489 MAP4P27816 1152 aaKnown RBP6.05□□□□□ -1.44
HMGB1-204ENST00000399489 GSTM4Q03013 218 aa6.05□□□□□ -1.44
HMGB1-204ENST00000399489 SMG8Q8ND04 991 aaKnown RBP6.05□□□□□ -1.44
HMGB1-204ENST00000399489 SHKBP1Q8TBC3 707 aa6.05□□□□□ -1.44
HMGB1-204ENST00000399489 ZFYVE28Q9HCC9 887 aa6.05□□□□□ -1.44
HMGB1-204ENST00000399489 CWC22Q9HCG8 908 aaKnown RBP6.05□□□□□ -1.44
HMGB1-204ENST00000399489 BRPF3Q9ULD4 1205 aa6.05□□□□□ -1.44
HMGB1-204ENST00000399489 FZD6O60353 706 aa6.04□□□□□ -1.44
HMGB1-204ENST00000399489 C8AP07357 584 aa6.04□□□□□ -1.44
HMGB1-204ENST00000399489 TCF3P15923 654 aa6.04□□□□□ -1.44
HMGB1-204ENST00000399489 EXOSC6Q5RKV6 272 aaKnown RBP6.04□□□□□ -1.44
HMGB1-204ENST00000399489 PAOXQ6QHF9 649 aa6.04□□□□□ -1.44
HMGB1-204ENST00000399489 DNAJC14Q6Y2X3 702 aaPredicted RBP6.04□□□□□ -1.44
HMGB1-204ENST00000399489 VN1R5Q7Z5H4 357 aa6.04□□□□□ -1.44
HMGB1-204ENST00000399489 GJD3Q8N144 294 aa6.04□□□□□ -1.44
HMGB1-204ENST00000399489 DRC1Q96MC2 740 aa6.04□□□□□ -1.44
HMGB1-204ENST00000399489 EGFL7Q9UHF1 273 aa6.04□□□□□ -1.44
HMGB1-204ENST00000399489 NCANO14594 1321 aa6.04□□□□□ -1.44
HMGB1-204ENST00000399489 WDR64B1ANS9 1081 aa6.03□□□□□ -1.44
HMGB1-204ENST00000399489 ESRRAP11474 423 aaPredicted RBP6.03□□□□□ -1.44
HMGB1-204ENST00000399489 ZNF211Q13398 564 aaPredicted RBP6.03□□□□□ -1.44
HMGB1-204ENST00000399489 SREK1Q8WXA9 508 aaKnown RBP6.03□□□□□ -1.44
HMGB1-204ENST00000399489 C8orf37Q96NL8 207 aa6.03□□□□□ -1.44
HMGB1-204ENST00000399489 OSBPL1AQ9BXW6 950 aa6.03□□□□□ -1.44
HMGB1-204ENST00000399489 TMPRSS13Q9BYE2 586 aa6.03□□□□□ -1.44
HMGB1-204ENST00000399489 SUGCTQ9HAC7 445 aa6.03□□□□□ -1.44
HMGB1-204ENST00000399489 ANO2Q9NQ90 1003 aa6.03□□□□□ -1.44
HMGB1-204ENST00000399489 LEMD3Q9Y2U8 911 aa6.03□□□□□ -1.44
HMGB1-204ENST00000399489 LOC100289279A0A1B0GTE1 492 aa6.02□□□□□ -1.45
HMGB1-204ENST00000399489 GP2P55259 537 aaKnown RBP6.02□□□□□ -1.45
HMGB1-204ENST00000399489 NFKBIBQ15653 356 aa6.02□□□□□ -1.45
HMGB1-204ENST00000399489 CPSF6Q16630 551 aaKnown RBP eCLIP6.02□□□□□ -1.453e-18■■□□□ 11.5
HMGB1-204ENST00000399489 HGSNATQ68CP4 663 aa6.02□□□□□ -1.45
HMGB1-204ENST00000399489 SPOCD1Q6ZMY3 1216 aa6.02□□□□□ -1.45
HMGB1-204ENST00000399489 GLYCTKQ8IVS8 523 aa6.02□□□□□ -1.45
HMGB1-204ENST00000399489 CCDC87Q9NVE4 849 aa6.02□□□□□ -1.45
HMGB1-204ENST00000399489 FAM95CA0A1B0GW59 222 aa6.02□□□□□ -1.45
HMGB1-204ENST00000399489 NDUFB5O43674 189 aa6.02□□□□□ -1.45
HMGB1-204ENST00000399489 WNT11O96014 354 aa6.02□□□□□ -1.45
HMGB1-204ENST00000399489 CYP11A1P05108 521 aa6.02□□□□□ -1.45
HMGB1-204ENST00000399489 ZNF16P17020 682 aaPredicted RBP6.02□□□□□ -1.45
HMGB1-204ENST00000399489 ERCC3P19447 782 aa6.02□□□□□ -1.45
HMGB1-204ENST00000399489 PDE3BQ13370 1112 aa6.02□□□□□ -1.45
HMGB1-204ENST00000399489 SGO2Q562F6 1265 aa6.02□□□□□ -1.45
HMGB1-204ENST00000399489 MFSD14AQ96MC6 490 aa6.02□□□□□ -1.45
HMGB1-204ENST00000399489 LIN7BQ9HAP6 207 aa6.02□□□□□ -1.45
HMGB1-204ENST00000399489 PIM2Q9P1W9 311 aa6.02□□□□□ -1.45
HMGB1-204ENST00000399489 A0A096LPE4 126 aa6.01□□□□□ -1.45
HMGB1-204ENST00000399489 A0A1W2PPZ6 126 aa6.01□□□□□ -1.45
HMGB1-204ENST00000399489 PRRG2O14669 202 aa6.01□□□□□ -1.45
HMGB1-204ENST00000399489 MED26O95402 600 aa6.01□□□□□ -1.45
HMGB1-204ENST00000399489 PCDH1Q08174 1060 aa6.01□□□□□ -1.45
HMGB1-204ENST00000399489 GALNT12Q8IXK2 581 aa6.01□□□□□ -1.45
HMGB1-204ENST00000399489 METTL22Q9BUU2 404 aaPredicted RBP6.01□□□□□ -1.45
HMGB1-204ENST00000399489 CLEC4MQ9H2X3 399 aaPredicted RBP6.01□□□□□ -1.45
HMGB1-204ENST00000399489 PRR19A6NJB7 356 aa6□□□□□ -1.45
HMGB1-204ENST00000399489 ICMTO60725 284 aa6□□□□□ -1.45
HMGB1-204ENST00000399489 POLR3DP05423 398 aaPredicted RBP6□□□□□ -1.45
HMGB1-204ENST00000399489 SPINK2P20155 84 aa6□□□□□ -1.45
HMGB1-204ENST00000399489 HNRNPUQ00839 825 aaKnown RBP eCLIP6□□□□□ -1.45
HMGB1-204ENST00000399489 DTX1Q86Y01 620 aa6□□□□□ -1.45
HMGB1-204ENST00000399489 LATS2Q9NRM7 1088 aa6□□□□□ -1.45
HMGB1-204ENST00000399489 RAD18Q9NS91 495 aa6□□□□□ -1.45
HMGB1-204ENST00000399489 ANGEL1Q9UNK9 670 aaKnown RBP6□□□□□ -1.45
HMGB1-204ENST00000399489 H3BRB1 525 aa5.99□□□□□ -1.45
HMGB1-204ENST00000399489 TIAF1O95411 115 aa5.99□□□□□ -1.45
HMGB1-204ENST00000399489 SOX4Q06945 474 aaPredicted RBP5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms