RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 BMS1Q14692 1282 aaKnown RBP13.01□□□□□ -0.33
CUX1-204ENST00000393824 PTPN14Q15678 1187 aa13.01□□□□□ -0.33
CUX1-204ENST00000393824 ANO6Q4KMQ2 910 aa13.01□□□□□ -0.33
CUX1-204ENST00000393824 TPTE2Q6XPS3 522 aa13.01□□□□□ -0.33
CUX1-204ENST00000393824 LRRC8AQ8IWT6 810 aa13.01□□□□□ -0.33
CUX1-204ENST00000393824 CNTROBQ8N137 903 aa13.01□□□□□ -0.33
CUX1-204ENST00000393824 TM6SF1Q9BZW5 370 aa13.01□□□□□ -0.33
CUX1-204ENST00000393824 LSG1Q9H089 658 aaKnown RBP13.01□□□□□ -0.33
CUX1-204ENST00000393824 MMP10P09238 476 aa13□□□□□ -0.33
CUX1-204ENST00000393824 GJB2P29033 226 aa13□□□□□ -0.33
CUX1-204ENST00000393824 G3BP1Q13283 466 aaKnown RBP eCLIP13□□□□□ -0.33
CUX1-204ENST00000393824 TTC6Q86TZ1 520 aa13□□□□□ -0.33
CUX1-204ENST00000393824 CNBD1Q8NA66 436 aa13□□□□□ -0.33
CUX1-204ENST00000393824 CCDC8Q9H0W5 538 aaPredicted RBP13□□□□□ -0.33
CUX1-204ENST00000393824 STK32BQ9NY57 414 aa13□□□□□ -0.33
CUX1-204ENST00000393824 CLIP2Q9UDT6 1046 aa13□□□□□ -0.33
CUX1-204ENST00000393824 ERICH4A6NGS2 130 aa13□□□□□ -0.33
CUX1-204ENST00000393824 EYA2O00167 538 aa13□□□□□ -0.33
CUX1-204ENST00000393824 CCDC144BQ3MJ40 725 aa13□□□□□ -0.33
CUX1-204ENST00000393824 HSP90AB4PQ58FF6 505 aa13□□□□□ -0.33
CUX1-204ENST00000393824 SLC10A5Q5PT55 438 aa13□□□□□ -0.33
CUX1-204ENST00000393824 CCDC144CPQ8IYA2 1237 aa13□□□□□ -0.33
CUX1-204ENST00000393824 PI4K2BQ8TCG2 481 aa13□□□□□ -0.33
CUX1-204ENST00000393824 CELF1Q92879 486 aaKnown RBP13□□□□□ -0.33
CUX1-204ENST00000393824 KCNB2Q92953 911 aa13□□□□□ -0.33
CUX1-204ENST00000393824 NOL10Q9BSC4 688 aaKnown RBP13□□□□□ -0.33
CUX1-204ENST00000393824 TNMDQ9H2S6 317 aa13□□□□□ -0.33
CUX1-204ENST00000393824 ZNF446Q9NWS9 450 aa13□□□□□ -0.33
CUX1-204ENST00000393824 MYH3P11055 1940 aa12.99□□□□□ -0.33
CUX1-204ENST00000393824 SLU7O95391 586 aaKnown RBP12.99□□□□□ -0.33
CUX1-204ENST00000393824 H2AFXP16104 143 aaPredicted RBP12.99□□□□□ -0.33
CUX1-204ENST00000393824 LIG1P18858 919 aa12.99□□□□□ -0.33
CUX1-204ENST00000393824 KRT85P78386 507 aa12.99□□□□□ -0.33
CUX1-204ENST00000393824 VPS53Q5VIR6 699 aa12.99□□□□□ -0.33
CUX1-204ENST00000393824 SARM1Q6SZW1 724 aa12.99□□□□□ -0.33
CUX1-204ENST00000393824 HELBQ8NG08 1087 aaPredicted RBP12.99□□□□□ -0.33
CUX1-204ENST00000393824 ZNF592Q92610 1267 aa12.99□□□□□ -0.33
CUX1-204ENST00000393824 DDX19AQ9NUU7 478 aaKnown RBP12.99□□□□□ -0.33
CUX1-204ENST00000393824 KIF2AO00139 706 aaPredicted RBP12.99□□□□□ -0.33
CUX1-204ENST00000393824 TIMM10P62072 90 aa12.99□□□□□ -0.33
CUX1-204ENST00000393824 MAPK8IP2Q13387 824 aaPredicted RBP12.99□□□□□ -0.33
CUX1-204ENST00000393824 ELF2Q15723 593 aa12.99□□□□□ -0.33
CUX1-204ENST00000393824 RUFY2Q8WXA3 655 aa12.99□□□□□ -0.33
CUX1-204ENST00000393824 RIPOR2Q9Y4F9 1068 aa12.99□□□□□ -0.33
CUX1-204ENST00000393824 RIC1Q4ADV7 1423 aa12.98□□□□□ -0.33
CUX1-204ENST00000393824 NPHP1O15259 732 aa12.98□□□□□ -0.33
CUX1-204ENST00000393824 ZNF165P49910 485 aa12.98□□□□□ -0.33
CUX1-204ENST00000393824 HNRNPH2P55795 449 aaKnown RBP12.98□□□□□ -0.33
CUX1-204ENST00000393824 SF3B3Q15393 1217 aaKnown RBP12.98□□□□□ -0.33
CUX1-204ENST00000393824 CAMK4Q16566 473 aa12.98□□□□□ -0.33
CUX1-204ENST00000393824 LDHAL6AQ6ZMR3 332 aa12.98□□□□□ -0.33
CUX1-204ENST00000393824 AACSQ86V21 672 aa12.98□□□□□ -0.33
CUX1-204ENST00000393824 RASEFQ8IZ41 740 aa12.98□□□□□ -0.33
CUX1-204ENST00000393824 MRFAP1L1Q96HT8 127 aa12.98□□□□□ -0.33
CUX1-204ENST00000393824 NYXQ9GZU5 481 aa12.98□□□□□ -0.33
CUX1-204ENST00000393824 DBNLQ9UJU6 430 aaKnown RBP12.98□□□□□ -0.33
CUX1-204ENST00000393824 TTC41PQ6P2S7 1318 aa12.98□□□□□ -0.33
CUX1-204ENST00000393824 ANKRD18BA2A2Z9 1011 aa12.97□□□□□ -0.33
CUX1-204ENST00000393824 NLGN1Q8N2Q7 840 aa12.97□□□□□ -0.33
CUX1-204ENST00000393824 ST7Q9NRC1 585 aa12.97□□□□□ -0.33
CUX1-204ENST00000393824 DACT1Q9NYF0 836 aa12.97□□□□□ -0.33
CUX1-204ENST00000393824 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.97□□□□□ -0.33
CUX1-204ENST00000393824 USP27XA6NNY8 438 aa12.97□□□□□ -0.33
CUX1-204ENST00000393824 TAF5LO75529 589 aa12.97□□□□□ -0.33
CUX1-204ENST00000393824 LARGE1O95461 756 aa12.97□□□□□ -0.33
CUX1-204ENST00000393824 MMP14P50281 582 aa12.97□□□□□ -0.33
CUX1-204ENST00000393824 CCDC152Q4G0S7 254 aa12.97□□□□□ -0.33
CUX1-204ENST00000393824 CKAP2LQ8IYA6 745 aa12.97□□□□□ -0.33
CUX1-204ENST00000393824 CLSTN2Q9H4D0 955 aa12.97□□□□□ -0.33
CUX1-204ENST00000393824 L2HGDHQ9H9P8 463 aa12.97□□□□□ -0.33
CUX1-204ENST00000393824 FEZ2Q9UHY8 353 aaPredicted RBP12.97□□□□□ -0.33
CUX1-204ENST00000393824 NDUFB9Q9Y6M9 179 aa12.97□□□□□ -0.33
CUX1-204ENST00000393824 LAMB2P55268 1798 aa12.97□□□□□ -0.33
CUX1-204ENST00000393824 CASZ1Q86V15 1759 aa12.97□□□□□ -0.33
CUX1-204ENST00000393824 MAP4K4O95819 1239 aaPredicted RBP12.96□□□□□ -0.33
CUX1-204ENST00000393824 TNNI3KQ59H18 835 aa12.96□□□□□ -0.33
CUX1-204ENST00000393824 CCDC83Q8IWF9 413 aa12.96□□□□□ -0.33
CUX1-204ENST00000393824 VGLL2Q8N8G2 317 aa12.96□□□□□ -0.33
CUX1-204ENST00000393824 DBNDD2Q9BQY9 259 aa12.96□□□□□ -0.33
CUX1-204ENST00000393824 SCAND2PQ9GZW5 306 aaPredicted RBP12.96□□□□□ -0.33
CUX1-204ENST00000393824 FHOD1Q9Y613 1164 aa12.96□□□□□ -0.33
CUX1-204ENST00000393824 FPGT-TNNI3KV9GXZ4 949 aa12.96□□□□□ -0.33
CUX1-204ENST00000393824 CCDC125Q86Z20 511 aa12.96□□□□□ -0.34
CUX1-204ENST00000393824 CLASRPQ8N2M8 674 aaKnown RBP12.96□□□□□ -0.34
CUX1-204ENST00000393824 FLAD1Q8NFF5 587 aa12.96□□□□□ -0.34
CUX1-204ENST00000393824 NLRP3Q96P20 1036 aa12.96□□□□□ -0.34
CUX1-204ENST00000393824 ZSWIM6Q9HCJ5 1215 aa12.96□□□□□ -0.34
CUX1-204ENST00000393824 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.96□□□□□ -0.347e-6■□□□□ 9.2
CUX1-204ENST00000393824 V9GYY5 206 aaPredicted RBP12.96□□□□□ -0.34
CUX1-204ENST00000393824 LRP5O75197 1615 aa12.96□□□□□ -0.34
CUX1-204ENST00000393824 GLRX3O76003 335 aaKnown RBP12.95□□□□□ -0.34
CUX1-204ENST00000393824 SKILP12757 684 aa12.95□□□□□ -0.34
CUX1-204ENST00000393824 ADORA1P30542 326 aa12.95□□□□□ -0.34
CUX1-204ENST00000393824 IL15P40933 162 aaPredicted RBP12.95□□□□□ -0.34
CUX1-204ENST00000393824 CERS3Q8IU89 383 aa12.95□□□□□ -0.34
CUX1-204ENST00000393824 ERC1Q8IUD2 1116 aa12.95□□□□□ -0.34
CUX1-204ENST00000393824 CCAR2Q8N163 923 aaKnown RBP12.95□□□□□ -0.34
CUX1-204ENST00000393824 LARP6Q9BRS8 491 aaKnown RBP12.95□□□□□ -0.34
CUX1-204ENST00000393824 CNNM1Q9NRU3 951 aa12.95□□□□□ -0.34
CUX1-204ENST00000393824 VPS37CA5D8V6 355 aaPredicted RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 207.4 ms