RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 ECHDC1Q9NTX5 307 aa12.31□□□□□ -0.44
VPS53-202ENST00000389040 CNOT7Q9UIV1 285 aaKnown RBP12.31□□□□□ -0.44
VPS53-202ENST00000389040 A0A1B0GUL6 1792 aa12.31□□□□□ -0.44
VPS53-202ENST00000389040 ERC2O15083 957 aa12.31□□□□□ -0.44
VPS53-202ENST00000389040 TTF1Q15361 905 aaPredicted RBP12.31□□□□□ -0.44
VPS53-202ENST00000389040 SLF2Q8IX21 1173 aa12.31□□□□□ -0.44
VPS53-202ENST00000389040 ZC3H15Q8WU90 426 aaKnown RBP12.31□□□□□ -0.44
VPS53-202ENST00000389040 SNX21Q969T3 373 aa12.31□□□□□ -0.44
VPS53-202ENST00000389040 KIF2CQ99661 725 aa12.31□□□□□ -0.44
VPS53-202ENST00000389040 MX1P20591 662 aa12.3□□□□□ -0.44
VPS53-202ENST00000389040 ZNF784Q8NCA9 323 aaPredicted RBP12.3□□□□□ -0.44
VPS53-202ENST00000389040 MTMR14Q8NCE2 650 aa12.3□□□□□ -0.44
VPS53-202ENST00000389040 HMG20BQ9P0W2 317 aa12.3□□□□□ -0.44
VPS53-202ENST00000389040 SERPINA10Q9UK55 444 aa12.3□□□□□ -0.44
VPS53-202ENST00000389040 MCAMP43121 646 aa12.29□□□□□ -0.44
VPS53-202ENST00000389040 FBXW7Q969H0 707 aa12.29□□□□□ -0.44
VPS53-202ENST00000389040 TAF1DQ9H5J8 278 aaPredicted RBP12.29□□□□□ -0.44
VPS53-202ENST00000389040 STAP2Q9UGK3 403 aa12.29□□□□□ -0.44
VPS53-202ENST00000389040 ZBTB12Q9Y330 459 aaPredicted RBP12.29□□□□□ -0.44
VPS53-202ENST00000389040 TIAM2Q8IVF5 1701 aa12.29□□□□□ -0.44
VPS53-202ENST00000389040 AOX1Q06278 1338 aa12.29□□□□□ -0.44
VPS53-202ENST00000389040 WDR90Q96KV7 1748 aa12.29□□□□□ -0.44
VPS53-202ENST00000389040 POTECB2RU33 542 aa12.29□□□□□ -0.44
VPS53-202ENST00000389040 GLRX3O76003 335 aaKnown RBP12.29□□□□□ -0.44
VPS53-202ENST00000389040 LDHBP07195 334 aaKnown RBP12.29□□□□□ -0.44
VPS53-202ENST00000389040 EPHX2P34913 555 aa12.29□□□□□ -0.44
VPS53-202ENST00000389040 DEKP35659 375 aaKnown RBP12.29□□□□□ -0.44
VPS53-202ENST00000389040 CHAF1AQ13111 956 aaPredicted RBP12.29□□□□□ -0.44
VPS53-202ENST00000389040 MICALL2Q8IY33 904 aa12.29□□□□□ -0.44
VPS53-202ENST00000389040 RRAGCQ9HB90 399 aa12.29□□□□□ -0.44
VPS53-202ENST00000389040 TLR7Q9NYK1 1049 aaKnown RBP12.29□□□□□ -0.44
VPS53-202ENST00000389040 IQSEC3Q9UPP2 1182 aaPredicted RBP12.29□□□□□ -0.44
VPS53-202ENST00000389040 ARAP2Q8WZ64 1704 aa12.28□□□□□ -0.44
VPS53-202ENST00000389040 HHIPL2Q6UWX4 724 aa12.28□□□□□ -0.44
VPS53-202ENST00000389040 CERS5Q8N5B7 392 aa12.28□□□□□ -0.44
VPS53-202ENST00000389040 FAM163AQ96GL9 167 aaPredicted RBP12.28□□□□□ -0.44
VPS53-202ENST00000389040 HAUS7Q99871 368 aa12.28□□□□□ -0.44
VPS53-202ENST00000389040 MAP4K4O95819 1239 aaPredicted RBP12.27□□□□□ -0.44
VPS53-202ENST00000389040 GSTO1P78417 241 aa12.27□□□□□ -0.44
VPS53-202ENST00000389040 TSHZ3Q63HK5 1081 aa12.27□□□□□ -0.44
VPS53-202ENST00000389040 CERS3Q8IU89 383 aa12.27□□□□□ -0.44
VPS53-202ENST00000389040 MYOZ2Q9NPC6 264 aa12.27□□□□□ -0.44
VPS53-202ENST00000389040 PGAP2Q9UHJ9 254 aa12.27□□□□□ -0.44
VPS53-202ENST00000389040 TTF2Q9UNY4 1162 aaKnown RBP12.27□□□□□ -0.44
VPS53-202ENST00000389040 CCDC88AQ3V6T2 1871 aa12.27□□□□□ -0.45
VPS53-202ENST00000389040 LDHCP07864 332 aa12.27□□□□□ -0.45
VPS53-202ENST00000389040 EPS15P42566 896 aa12.27□□□□□ -0.45
VPS53-202ENST00000389040 LRRFIP1Q32MZ4 808 aaKnown RBP12.27□□□□□ -0.45
VPS53-202ENST00000389040 KIAA0825Q8IV33 1275 aa12.27□□□□□ -0.45
VPS53-202ENST00000389040 SPRYD3Q8NCJ5 442 aa12.27□□□□□ -0.45
VPS53-202ENST00000389040 TEKT1Q969V4 418 aa12.27□□□□□ -0.45
VPS53-202ENST00000389040 USP26Q9BXU7 913 aa12.27□□□□□ -0.45
VPS53-202ENST00000389040 MYO1BO43795 1136 aa12.26□□□□□ -0.45
VPS53-202ENST00000389040 TOMM70O94826 608 aa12.26□□□□□ -0.45
VPS53-202ENST00000389040 REC8O95072 547 aa12.26□□□□□ -0.45
VPS53-202ENST00000389040 CYP2E1P05181 493 aaPredicted RBP12.26□□□□□ -0.45
VPS53-202ENST00000389040 SCARF1Q14162 830 aa12.26□□□□□ -0.45
VPS53-202ENST00000389040 LDHDQ86WU2 507 aa12.26□□□□□ -0.45
VPS53-202ENST00000389040 ZDHHC15Q96MV8 337 aa12.26□□□□□ -0.45
VPS53-202ENST00000389040 NMRK2Q9NPI5 230 aa12.26□□□□□ -0.45
VPS53-202ENST00000389040 LRP2BPQ9P2M1 347 aa12.26□□□□□ -0.45
VPS53-202ENST00000389040 ZAP70P43403 619 aa12.25□□□□□ -0.45
VPS53-202ENST00000389040 MAP3K12Q12852 859 aa12.25□□□□□ -0.45
VPS53-202ENST00000389040 DLGAP5Q15398 846 aa12.25□□□□□ -0.45
VPS53-202ENST00000389040 ZNF526Q8TF50 670 aaPredicted RBP12.25□□□□□ -0.45
VPS53-202ENST00000389040 ZBED3Q96IU2 234 aaPredicted RBP12.25□□□□□ -0.45
VPS53-202ENST00000389040 ABCF2Q9UG63 623 aa12.25□□□□□ -0.45
VPS53-202ENST00000389040 SCN4AP35499 1836 aa12.25□□□□□ -0.45
VPS53-202ENST00000389040 PITPNM2Q9BZ72 1349 aa12.25□□□□□ -0.45
VPS53-202ENST00000389040 KIF3CO14782 793 aa12.25□□□□□ -0.45
VPS53-202ENST00000389040 KIF4BQ2VIQ3 1234 aa12.25□□□□□ -0.45
VPS53-202ENST00000389040 ZSCAN25Q6NSZ9 544 aa12.25□□□□□ -0.45
VPS53-202ENST00000389040 DZIP1Q86YF9 867 aaKnown RBP12.25□□□□□ -0.45
VPS53-202ENST00000389040 RBM46Q8TBY0 533 aaKnown RBP12.25□□□□□ -0.45
VPS53-202ENST00000389040 MXD3Q9BW11 206 aa12.25□□□□□ -0.45
VPS53-202ENST00000389040 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.25□□□□□ -0.453e-7■■■■□ 22.8
VPS53-202ENST00000389040 COL1A1P02452 1464 aaPredicted RBP12.24□□□□□ -0.45
VPS53-202ENST00000389040 PRDX5P30044 214 aa12.24□□□□□ -0.45
VPS53-202ENST00000389040 RABEP1Q15276 862 aa12.24□□□□□ -0.45
VPS53-202ENST00000389040 PI4K2BQ8TCG2 481 aa12.24□□□□□ -0.45
VPS53-202ENST00000389040 BOLA2Q9H3K6 86 aa12.24□□□□□ -0.45
VPS53-202ENST00000389040 PAG1Q9NWQ8 432 aa12.24□□□□□ -0.45
VPS53-202ENST00000389040 JAG2Q9Y219 1238 aa12.24□□□□□ -0.45
VPS53-202ENST00000389040 PSME4Q14997 1843 aa12.24□□□□□ -0.45
VPS53-202ENST00000389040 SCN9AQ15858 1988 aa12.24□□□□□ -0.45
VPS53-202ENST00000389040 SPDYE2BA6NHP3 402 aa12.23□□□□□ -0.45
VPS53-202ENST00000389040 TRIM6-TRIM34B2RNG4 842 aa12.23□□□□□ -0.45
VPS53-202ENST00000389040 WNT10BO00744 389 aa12.23□□□□□ -0.45
VPS53-202ENST00000389040 SPDYE6P0CI01 402 aa12.23□□□□□ -0.45
VPS53-202ENST00000389040 CRKP46108 304 aa12.23□□□□□ -0.45
VPS53-202ENST00000389040 FSTL1Q12841 308 aa12.23□□□□□ -0.45
VPS53-202ENST00000389040 CFAP100Q494V2 611 aa12.23□□□□□ -0.45
VPS53-202ENST00000389040 FKBP1CQ5VVH2 108 aa12.23□□□□□ -0.45
VPS53-202ENST00000389040 PI16Q6UXB8 463 aa12.23□□□□□ -0.45
VPS53-202ENST00000389040 NSUN4Q96CB9 384 aaKnown RBP12.23□□□□□ -0.45
VPS53-202ENST00000389040 CHMP5Q9NZZ3 219 aa12.23□□□□□ -0.45
VPS53-202ENST00000389040 RAI14Q9P0K7 980 aa12.23□□□□□ -0.45
VPS53-202ENST00000389040 CD2BP2O95400 341 aaKnown RBP12.23□□□□□ -0.45
VPS53-202ENST00000389040 ZFYP08048 801 aaPredicted RBP12.23□□□□□ -0.45
VPS53-202ENST00000389040 PLCG2P16885 1265 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms