RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 IL2RAP01589 272 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 ZNF16P17020 682 aaPredicted RBP3.07□□□□□ -1.92
VPS54-202ENST00000354504 GSK3AP49840 483 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 ZNF800Q2TB10 664 aaPredicted RBP eCLIP3.07□□□□□ -1.922e-6■■□□□ 14.5
VPS54-202ENST00000354504 RNF20Q5VTR2 975 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 POTEAQ6S8J7 498 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 CCDC146Q8IYE0 955 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 ITPKCQ96DU7 683 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 ZFAND3Q9H8U3 227 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 ARHGEF10LQ9HCE6 1279 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 TNS2Q63HR2 1409 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 BTAF1O14981 1849 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 RGPD3A6NKT7 1758 aaPredicted RBP3.07□□□□□ -1.92
VPS54-202ENST00000354504 RGPD4Q7Z3J3 1758 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 ABCC4O15439 1325 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 TNS1Q9HBL0 1735 aaKnown RBP3.07□□□□□ -1.92
VPS54-202ENST00000354504 SLC35F4A4IF30 521 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 ANKRD33BA6NCL7 494 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 CAPN5O15484 640 aaPredicted RBP3.07□□□□□ -1.92
VPS54-202ENST00000354504 ARHGEF15O94989 841 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 KCNA6P17658 529 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 PPP1R26Q5T8A7 1209 aaPredicted RBP3.07□□□□□ -1.92
VPS54-202ENST00000354504 LARP1Q6PKG0 1096 aaKnown RBP3.07□□□□□ -1.92
VPS54-202ENST00000354504 VASH1Q7L8A9 365 aaPredicted RBP3.07□□□□□ -1.92
VPS54-202ENST00000354504 LARGE2Q8N3Y3 721 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 TCP11L2Q8N4U5 519 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 ZDHHC1Q8WTX9 485 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 GGNBP2Q9H3C7 697 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 RCAN3Q9UKA8 241 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 HCN2Q9UL51 889 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 USP20Q9Y2K6 914 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 WASF2Q9Y6W5 498 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 POTECB2RU33 542 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 TMPOP42166 694 aaKnown RBP3.07□□□□□ -1.92
VPS54-202ENST00000354504 SEC13P55735 322 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 EIF4A2Q14240 407 aaKnown RBP3.07□□□□□ -1.92
VPS54-202ENST00000354504 RUNDC1Q96C34 613 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 QTRT2Q9H974 415 aaKnown RBP3.07□□□□□ -1.92
VPS54-202ENST00000354504 WWC3Q9ULE0 1092 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 IQSEC3Q9UPP2 1182 aaPredicted RBP3.07□□□□□ -1.92
VPS54-202ENST00000354504 KIAA0232Q92628 1395 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 MAP3K19Q56UN5 1328 aa3.06□□□□□ -1.92
VPS54-202ENST00000354504 TNFRSF10BO14763 440 aa3.06□□□□□ -1.92
VPS54-202ENST00000354504 SPINT1O43278 529 aa3.06□□□□□ -1.92
VPS54-202ENST00000354504 MPSTP25325 297 aa3.06□□□□□ -1.92
VPS54-202ENST00000354504 GDF10P55107 478 aa3.06□□□□□ -1.92
VPS54-202ENST00000354504 STAG2Q8N3U4 1231 aa3.06□□□□□ -1.92
VPS54-202ENST00000354504 SCG3Q8WXD2 468 aaKnown RBP3.06□□□□□ -1.92
VPS54-202ENST00000354504 CRBNQ96SW2 442 aa3.06□□□□□ -1.92
VPS54-202ENST00000354504 NOD1Q9Y239 953 aa3.06□□□□□ -1.92
VPS54-202ENST00000354504 TNFRSF10AO00220 468 aa3.06□□□□□ -1.92
VPS54-202ENST00000354504 SNRPBP14678 240 aaKnown RBP3.06□□□□□ -1.92
VPS54-202ENST00000354504 DDIT3P35638 169 aa3.06□□□□□ -1.92
VPS54-202ENST00000354504 ABCF1Q8NE71 845 aaKnown RBP eCLIP3.06□□□□□ -1.92
VPS54-202ENST00000354504 BCS1LQ9Y276 419 aa3.06□□□□□ -1.92
VPS54-202ENST00000354504 KNSTRNQ9Y448 316 aa3.06□□□□□ -1.92
VPS54-202ENST00000354504 GPC6Q9Y625 555 aaPredicted RBP3.06□□□□□ -1.92
VPS54-202ENST00000354504 MYH13Q9UKX3 1938 aa3.06□□□□□ -1.92
VPS54-202ENST00000354504 SWI5Q1ZZU3 235 aa3.06□□□□□ -1.92
VPS54-202ENST00000354504 COX20Q5RI15 118 aa3.06□□□□□ -1.92
VPS54-202ENST00000354504 FBXO33Q7Z6M2 555 aa3.06□□□□□ -1.92
VPS54-202ENST00000354504 TSPYL6Q8N831 410 aa3.06□□□□□ -1.92
VPS54-202ENST00000354504 EHBP1Q8NDI1 1231 aa3.06□□□□□ -1.92
VPS54-202ENST00000354504 TMC1Q8TDI8 760 aa3.06□□□□□ -1.92
VPS54-202ENST00000354504 GIPC2Q8TF65 315 aa3.06□□□□□ -1.92
VPS54-202ENST00000354504 ZNF395Q9H8N7 513 aaPredicted RBP3.06□□□□□ -1.92
VPS54-202ENST00000354504 EGFL7Q9UHF1 273 aa3.06□□□□□ -1.92
VPS54-202ENST00000354504 AMOTL2Q9Y2J4 779 aa3.06□□□□□ -1.92
VPS54-202ENST00000354504 COL5A2P05997 1499 aaPredicted RBP3.06□□□□□ -1.92
VPS54-202ENST00000354504 TNRC6CQ9HCJ0 1690 aaKnown RBP3.05□□□□□ -1.92
VPS54-202ENST00000354504 ANKRD31Q8N7Z5 1873 aa3.05□□□□□ -1.92
VPS54-202ENST00000354504 ST8SIA5O15466 376 aa3.05□□□□□ -1.92
VPS54-202ENST00000354504 VAMP4O75379 141 aa3.05□□□□□ -1.92
VPS54-202ENST00000354504 ERCC3P19447 782 aa3.05□□□□□ -1.92
VPS54-202ENST00000354504 FOXC1Q12948 553 aa3.05□□□□□ -1.92
VPS54-202ENST00000354504 NNTQ13423 1086 aa3.05□□□□□ -1.92
VPS54-202ENST00000354504 TRIM50Q86XT4 487 aa3.05□□□□□ -1.92
VPS54-202ENST00000354504 ETFBKMTQ8IXQ9 262 aa3.05□□□□□ -1.92
VPS54-202ENST00000354504 NGEFQ8N5V2 710 aa3.05□□□□□ -1.92
VPS54-202ENST00000354504 MRRFQ96E11 262 aaKnown RBP3.05□□□□□ -1.92
VPS54-202ENST00000354504 BIN2Q9UBW5 565 aaPredicted RBP3.05□□□□□ -1.92
VPS54-202ENST00000354504 HRH3Q9Y5N1 445 aa3.05□□□□□ -1.92
VPS54-202ENST00000354504 CPDO75976 1380 aa3.05□□□□□ -1.92
VPS54-202ENST00000354504 LAMB1P07942 1786 aa3.05□□□□□ -1.92
VPS54-202ENST00000354504 TTC21AQ8NDW8 1320 aa3.05□□□□□ -1.92
VPS54-202ENST00000354504 PSME4Q14997 1843 aa3.05□□□□□ -1.92
VPS54-202ENST00000354504 GPR182O15218 404 aa3.05□□□□□ -1.92
VPS54-202ENST00000354504 ICMTO60725 284 aa3.05□□□□□ -1.92
VPS54-202ENST00000354504 CNGB1Q14028 1251 aaPredicted RBP3.05□□□□□ -1.92
VPS54-202ENST00000354504 CFHR5Q9BXR6 569 aa3.05□□□□□ -1.92
VPS54-202ENST00000354504 BACH2Q9BYV9 841 aa3.05□□□□□ -1.92
VPS54-202ENST00000354504 E9PSI1 815 aa3.05□□□□□ -1.92
VPS54-202ENST00000354504 PPFIA3O75145 1194 aa3.05□□□□□ -1.92
VPS54-202ENST00000354504 INHAP05111 366 aa3.05□□□□□ -1.92
VPS54-202ENST00000354504 GRNP28799 593 aaKnown RBP3.05□□□□□ -1.92
VPS54-202ENST00000354504 COL19A1Q14993 1142 aa3.05□□□□□ -1.92
VPS54-202ENST00000354504 NBPF20Q3BBV1 942 aa3.05□□□□□ -1.92
VPS54-202ENST00000354504 C9orf131Q5VYM1 1079 aa3.05□□□□□ -1.92
VPS54-202ENST00000354504 KIF2CQ99661 725 aa3.05□□□□□ -1.92
VPS54-202ENST00000354504 ZBTB40Q9NUA8 1239 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms