RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 BTBD18B2RXH4 712 aa13.77□□□□□ -0.2
USP1-201ENST00000339950 IL2RBP14784 551 aa13.77□□□□□ -0.2
USP1-201ENST00000339950 CYP7A1P22680 504 aa13.77□□□□□ -0.2
USP1-201ENST00000339950 MFSD6Q6ZSS7 791 aa13.77□□□□□ -0.2
USP1-201ENST00000339950 NEURL4Q96JN8 1562 aa13.77□□□□□ -0.2
USP1-201ENST00000339950 TERF1P54274 439 aa13.77□□□□□ -0.21
USP1-201ENST00000339950 SSRP1Q08945 709 aaKnown RBP13.77□□□□□ -0.21
USP1-201ENST00000339950 KRT40Q6A162 431 aa13.77□□□□□ -0.21
USP1-201ENST00000339950 BABAM1Q9NWV8 329 aa13.77□□□□□ -0.21
USP1-201ENST00000339950 IFT172Q9UG01 1749 aa13.77□□□□□ -0.21
USP1-201ENST00000339950 MARCH6O60337 910 aa13.77□□□□□ -0.21
USP1-201ENST00000339950 ADKP55263 362 aaKnown RBP13.77□□□□□ -0.21
USP1-201ENST00000339950 ERCC6LQ2NKX8 1250 aa13.77□□□□□ -0.21
USP1-201ENST00000339950 FKBP15Q5T1M5 1219 aa13.77□□□□□ -0.21
USP1-201ENST00000339950 DZIP3Q86Y13 1208 aaKnown RBP13.77□□□□□ -0.21
USP1-201ENST00000339950 JMYQ8N9B5 988 aa13.77□□□□□ -0.21
USP1-201ENST00000339950 BCAMP50895 628 aa13.76□□□□□ -0.21
USP1-201ENST00000339950 MAP3K12Q12852 859 aa13.76□□□□□ -0.21
USP1-201ENST00000339950 ANO1Q5XXA6 986 aa13.76□□□□□ -0.21
USP1-201ENST00000339950 CCDC66A2RUB6 948 aa13.76□□□□□ -0.21
USP1-201ENST00000339950 POLR2DO15514 142 aaKnown RBP13.76□□□□□ -0.21
USP1-201ENST00000339950 MYSM1Q5VVJ2 828 aa13.76□□□□□ -0.21
USP1-201ENST00000339950 CCDC34Q96HJ3 373 aa13.76□□□□□ -0.21
USP1-201ENST00000339950 NACAP1Q9BZK3 213 aa13.76□□□□□ -0.21
USP1-201ENST00000339950 PREX1Q8TCU6 1659 aa13.76□□□□□ -0.21
USP1-201ENST00000339950 PFKFB1P16118 471 aa13.76□□□□□ -0.21
USP1-201ENST00000339950 CDC25AP30304 524 aa13.76□□□□□ -0.21
USP1-201ENST00000339950 SMYD4Q8IYR2 804 aaPredicted RBP13.76□□□□□ -0.21
USP1-201ENST00000339950 ZBTB1Q9Y2K1 713 aa13.75□□□□□ -0.21
USP1-201ENST00000339950 TCHHQ07283 1943 aa13.75□□□□□ -0.21
USP1-201ENST00000339950 FOXN1O15353 648 aa13.75□□□□□ -0.21
USP1-201ENST00000339950 PFKFB2O60825 505 aa13.75□□□□□ -0.21
USP1-201ENST00000339950 NR5A1Q13285 461 aa13.75□□□□□ -0.21
USP1-201ENST00000339950 ZNF174Q15697 407 aa13.75□□□□□ -0.21
USP1-201ENST00000339950 CCDC102BQ68D86 513 aa13.75□□□□□ -0.21
USP1-201ENST00000339950 NIP7Q9Y221 180 aaKnown RBP eCLIP13.75□□□□□ -0.21
USP1-201ENST00000339950 IGHMBP2P38935 993 aaKnown RBP13.75□□□□□ -0.21
USP1-201ENST00000339950 NRKQ7Z2Y5 1582 aa13.75□□□□□ -0.21
USP1-201ENST00000339950 CCT6AP40227 531 aaKnown RBP13.74□□□□□ -0.21
USP1-201ENST00000339950 CADPS2Q86UW7 1296 aa13.74□□□□□ -0.21
USP1-201ENST00000339950 VPS54Q9P1Q0 977 aa13.74□□□□□ -0.21
USP1-201ENST00000339950 ZNF609O15014 1411 aa13.74□□□□□ -0.21
USP1-201ENST00000339950 FAM193AP78312 1265 aa13.74□□□□□ -0.21
USP1-201ENST00000339950 MTX1Q13505 466 aa13.74□□□□□ -0.21
USP1-201ENST00000339950 WTAPQ15007 396 aa13.74□□□□□ -0.21
USP1-201ENST00000339950 TFCP2L1Q9NZI6 479 aa13.74□□□□□ -0.21
USP1-201ENST00000339950 PUF60Q9UHX1 559 aaKnown RBP13.74□□□□□ -0.21
USP1-201ENST00000339950 ARHGAP29Q52LW3 1261 aa13.74□□□□□ -0.21
USP1-201ENST00000339950 LRRC8AQ8IWT6 810 aa13.74□□□□□ -0.21
USP1-201ENST00000339950 APPBP2Q92624 585 aa13.74□□□□□ -0.21
USP1-201ENST00000339950 SRCAPQ6ZRS2 3230 aa13.74□□□□□ -0.21
USP1-201ENST00000339950 CTAGE5O15320 804 aa13.73□□□□□ -0.21
USP1-201ENST00000339950 FANCCQ00597 558 aa13.73□□□□□ -0.21
USP1-201ENST00000339950 ZMYM1Q5SVZ6 1142 aa13.73□□□□□ -0.21
USP1-201ENST00000339950 DIS3L2Q8IYB7 885 aaKnown RBP13.73□□□□□ -0.21
USP1-201ENST00000339950 TMEM87AQ8NBN3 555 aa13.73□□□□□ -0.21
USP1-201ENST00000339950 HELLSQ9NRZ9 838 aa13.73□□□□□ -0.21
USP1-201ENST00000339950 FANCLQ9NW38 375 aa13.73□□□□□ -0.21
USP1-201ENST00000339950 EXOC5O00471 708 aa13.73□□□□□ -0.21
USP1-201ENST00000339950 CTDNEP1O95476 244 aa13.73□□□□□ -0.21
USP1-201ENST00000339950 GTF2F1P35269 517 aaKnown RBP eCLIP13.73□□□□□ -0.21
USP1-201ENST00000339950 ATP6V1AP38606 617 aa13.73□□□□□ -0.21
USP1-201ENST00000339950 GYG1P46976 350 aa13.73□□□□□ -0.21
USP1-201ENST00000339950 KIF28PB7ZC32 967 aa13.73□□□□□ -0.21
USP1-201ENST00000339950 RTN1Q16799 776 aa13.73□□□□□ -0.21
USP1-201ENST00000339950 PPFIBP1Q86W92 1011 aa13.73□□□□□ -0.21
USP1-201ENST00000339950 KCNG4Q8TDN1 519 aa13.73□□□□□ -0.21
USP1-201ENST00000339950 ANGEL1Q9UNK9 670 aaKnown RBP13.73□□□□□ -0.21
USP1-201ENST00000339950 PXDNQ92626 1479 aa13.73□□□□□ -0.21
USP1-201ENST00000339950 PHACTR2O75167 634 aa13.73□□□□□ -0.21
USP1-201ENST00000339950 SSBP05455 408 aaKnown RBP eCLIP13.73□□□□□ -0.21
USP1-201ENST00000339950 TRMT1LQ7Z2T5 733 aaKnown RBP13.73□□□□□ -0.21
USP1-201ENST00000339950 ATG9AQ7Z3C6 839 aa13.73□□□□□ -0.21
USP1-201ENST00000339950 CCDC191Q8NCU4 936 aa13.73□□□□□ -0.21
USP1-201ENST00000339950 KIAA1468Q9P260 1216 aa13.73□□□□□ -0.21
USP1-201ENST00000339950 SMTNL1A8MU46 457 aa13.72□□□□□ -0.21
USP1-201ENST00000339950 CDKL5O76039 1030 aa13.72□□□□□ -0.21
USP1-201ENST00000339950 TCIRG1Q13488 830 aa13.72□□□□□ -0.21
USP1-201ENST00000339950 FAM47AQ5JRC9 791 aa13.72□□□□□ -0.21
USP1-201ENST00000339950 BLZF1Q9H2G9 400 aa13.72□□□□□ -0.21
USP1-201ENST00000339950 PIH1D3Q9NQM4 214 aaKnown RBP13.72□□□□□ -0.21
USP1-201ENST00000339950 V9GY48 417 aaPredicted RBP13.72□□□□□ -0.21
USP1-201ENST00000339950 MCAMP43121 646 aa13.72□□□□□ -0.21
USP1-201ENST00000339950 NAP1L1P55209 391 aaKnown RBP13.72□□□□□ -0.21
USP1-201ENST00000339950 DHX37Q8IY37 1157 aaKnown RBP13.72□□□□□ -0.21
USP1-201ENST00000339950 CARD6Q9BX69 1037 aa13.72□□□□□ -0.21
USP1-201ENST00000339950 ST7Q9NRC1 585 aa13.72□□□□□ -0.21
USP1-201ENST00000339950 STX8Q9UNK0 236 aa13.72□□□□□ -0.21
USP1-201ENST00000339950 CARMIL3Q8ND23 1372 aa13.72□□□□□ -0.21
USP1-201ENST00000339950 SLC5A1P13866 664 aa13.72□□□□□ -0.21
USP1-201ENST00000339950 ZNF710Q8N1W2 664 aa13.72□□□□□ -0.21
USP1-201ENST00000339950 FBXO18Q8NFZ0 1043 aa13.72□□□□□ -0.21
USP1-201ENST00000339950 TRIM34Q9BYJ4 488 aa13.72□□□□□ -0.21
USP1-201ENST00000339950 ZHX3Q9H4I2 956 aa13.72□□□□□ -0.21
USP1-201ENST00000339950 HOOK1Q9UJC3 728 aaKnown RBP13.72□□□□□ -0.21
USP1-201ENST00000339950 TMEM94Q12767 1356 aa13.71□□□□□ -0.21
USP1-201ENST00000339950 VWA3AA6NCI4 1184 aa13.71□□□□□ -0.21
USP1-201ENST00000339950 USP5P45974 858 aa13.71□□□□□ -0.21
USP1-201ENST00000339950 PDE6AP16499 860 aa13.71□□□□□ -0.21
USP1-201ENST00000339950 CCDC12Q8WUD4 166 aaPredicted RBP13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 96.3 ms