RNA–Protein interactions for RNA: ENST00000288398.10

TPM1-202, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-202ENST00000288398 HDAC5Q9UQL6 1122 aa17.57■□□□□ 0.4
TPM1-202ENST00000288398 TCP10L2B9ZVM9 353 aa17.56■□□□□ 0.4
TPM1-202ENST00000288398 FBXO33Q7Z6M2 555 aa17.56■□□□□ 0.4
TPM1-202ENST00000288398 TEKT1Q969V4 418 aa17.56■□□□□ 0.4
TPM1-202ENST00000288398 CLMNQ96JQ2 1002 aa17.56■□□□□ 0.4
TPM1-202ENST00000288398 HPS5Q9UPZ3 1129 aa17.56■□□□□ 0.4
TPM1-202ENST00000288398 SSC5DA1L4H1 1573 aa17.55■□□□□ 0.4
TPM1-202ENST00000288398 UBTFL1P0CB47 393 aaPredicted RBP17.55■□□□□ 0.4
TPM1-202ENST00000288398 SLC5A1P13866 664 aa17.55■□□□□ 0.4
TPM1-202ENST00000288398 IFNL1Q8IU54 200 aa17.55■□□□□ 0.4
TPM1-202ENST00000288398 CFHR5Q9BXR6 569 aa17.55■□□□□ 0.4
TPM1-202ENST00000288398 USP44Q9H0E7 712 aa17.55■□□□□ 0.4
TPM1-202ENST00000288398 USP2O75604 605 aaPredicted RBP17.54■□□□□ 0.4
TPM1-202ENST00000288398 HDLBPQ00341 1268 aaKnown RBP17.54■□□□□ 0.4
TPM1-202ENST00000288398 KLHDC4Q8TBB5 520 aa17.54■□□□□ 0.4
TPM1-202ENST00000288398 HOOK2Q96ED9 719 aa17.54■□□□□ 0.4
TPM1-202ENST00000288398 CSADQ9Y600 493 aa17.54■□□□□ 0.4
TPM1-202ENST00000288398 AOX1Q06278 1338 aa17.53■□□□□ 0.4
TPM1-202ENST00000288398 KIF16BQ96L93 1317 aa17.53■□□□□ 0.4
TPM1-202ENST00000288398 EYA2O00167 538 aa17.53■□□□□ 0.4
TPM1-202ENST00000288398 CT47B1P0C2W7 299 aaPredicted RBP17.53■□□□□ 0.4
TPM1-202ENST00000288398 BCAMP50895 628 aa17.53■□□□□ 0.4
TPM1-202ENST00000288398 FBXO46Q6PJ61 603 aaPredicted RBP17.53■□□□□ 0.4
TPM1-202ENST00000288398 API5Q9BZZ5 524 aaKnown RBP17.53■□□□□ 0.4
TPM1-202ENST00000288398 ELP3Q9H9T3 547 aa17.53■□□□□ 0.4
TPM1-202ENST00000288398 SUGT1Q9Y2Z0 365 aa17.53■□□□□ 0.4
TPM1-202ENST00000288398 ARAP2Q8WZ64 1704 aa17.52■□□□□ 0.4
TPM1-202ENST00000288398 WDHD1O75717 1129 aaPredicted RBP17.52■□□□□ 0.4
TPM1-202ENST00000288398 VGLL2Q8N8G2 317 aa17.52■□□□□ 0.4
TPM1-202ENST00000288398 LPIN2Q92539 896 aa17.52■□□□□ 0.4
TPM1-202ENST00000288398 CDCA7LQ96GN5 454 aa17.52■□□□□ 0.4
TPM1-202ENST00000288398 TMEM39BQ9GZU3 492 aa17.52■□□□□ 0.4
TPM1-202ENST00000288398 GNL3LQ9NVN8 582 aaKnown RBP17.52■□□□□ 0.4
TPM1-202ENST00000288398 WDR66Q8TBY9 1149 aa17.51■□□□□ 0.39
TPM1-202ENST00000288398 OPTNQ96CV9 577 aa17.51■□□□□ 0.39
TPM1-202ENST00000288398 ERO1AQ96HE7 468 aa17.51■□□□□ 0.39
TPM1-202ENST00000288398 MAP3K9P80192 1104 aa17.5■□□□□ 0.39
TPM1-202ENST00000288398 ZDHHC15Q96MV8 337 aa17.5■□□□□ 0.39
TPM1-202ENST00000288398 SIL1Q9H173 461 aa17.5■□□□□ 0.39
TPM1-202ENST00000288398 CEP126Q9P2H0 1117 aa17.5■□□□□ 0.39
TPM1-202ENST00000288398 TRIM17Q9Y577 477 aa17.5■□□□□ 0.39
TPM1-202ENST00000288398 IGF2BP3O00425 579 aaKnown RBP eCLIP17.49■□□□□ 0.39
TPM1-202ENST00000288398 ATP2B3Q16720 1220 aa17.49■□□□□ 0.39
TPM1-202ENST00000288398 MRIQ9BWK5 157 aa17.49■□□□□ 0.39
TPM1-202ENST00000288398 FBXO3Q9UK99 471 aa17.49■□□□□ 0.39
TPM1-202ENST00000288398 NOB1Q9ULX3 412 aaKnown RBP17.49■□□□□ 0.39
TPM1-202ENST00000288398 FGFR2P21802 821 aa17.48■□□□□ 0.39
TPM1-202ENST00000288398 GTF2A2P52657 109 aa17.48■□□□□ 0.39
TPM1-202ENST00000288398 CACNB3P54284 484 aa17.48■□□□□ 0.39
TPM1-202ENST00000288398 ARHGEF6Q15052 776 aa17.48■□□□□ 0.39
TPM1-202ENST00000288398 GRIK5Q16478 980 aa17.48■□□□□ 0.39
TPM1-202ENST00000288398 DCAF15Q66K64 600 aa17.48■□□□□ 0.39
TPM1-202ENST00000288398 OTUD5Q96G74 571 aa17.48■□□□□ 0.39
TPM1-202ENST00000288398 TEPSINQ96N21 525 aa17.48■□□□□ 0.39
TPM1-202ENST00000288398 R3HDMLQ9H3Y0 253 aa17.48■□□□□ 0.39
TPM1-202ENST00000288398 CIAO1O76071 339 aa17.47■□□□□ 0.39
TPM1-202ENST00000288398 RFX5P48382 616 aaPredicted RBP17.47■□□□□ 0.39
TPM1-202ENST00000288398 CRHR2Q13324 411 aa17.47■□□□□ 0.39
TPM1-202ENST00000288398 VGLL4Q14135 290 aa17.47■□□□□ 0.39
TPM1-202ENST00000288398 FKBP1CQ5VVH2 108 aa17.47■□□□□ 0.39
TPM1-202ENST00000288398 HHIPL2Q6UWX4 724 aa17.47■□□□□ 0.39
TPM1-202ENST00000288398 FAM83AQ86UY5 434 aa17.47■□□□□ 0.39
TPM1-202ENST00000288398 CCL15-CCL14A0A0B4J2E2 113 aa17.46■□□□□ 0.39
TPM1-202ENST00000288398 GJA5P36382 358 aa17.46■□□□□ 0.39
TPM1-202ENST00000288398 IL15P40933 162 aaPredicted RBP17.46■□□□□ 0.39
TPM1-202ENST00000288398 CCL15Q16663 113 aa17.46■□□□□ 0.39
TPM1-202ENST00000288398 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.46■□□□□ 0.39
TPM1-202ENST00000288398 CDAN1Q8IWY9 1227 aa17.46■□□□□ 0.39
TPM1-202ENST00000288398 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.46■□□□□ 0.39
TPM1-202ENST00000288398 WRNIP1Q96S55 665 aa17.46■□□□□ 0.39
TPM1-202ENST00000288398 ZFYVE28Q9HCC9 887 aa17.46■□□□□ 0.39
TPM1-202ENST00000288398 LRRFIP2Q9Y608 721 aaKnown RBP17.46■□□□□ 0.39
TPM1-202ENST00000288398 TESPA1A2RU30 521 aaPredicted RBP17.45■□□□□ 0.38
TPM1-202ENST00000288398 CCER2I3L3R5 266 aa17.45■□□□□ 0.38
TPM1-202ENST00000288398 LDHBP07195 334 aaKnown RBP17.45■□□□□ 0.38
TPM1-202ENST00000288398 SP3Q02447 781 aa17.45■□□□□ 0.38
TPM1-202ENST00000288398 TAF1CQ15572 869 aaPredicted RBP17.45■□□□□ 0.38
TPM1-202ENST00000288398 TRMT2AQ8IZ69 625 aaKnown RBP17.45■□□□□ 0.38
TPM1-202ENST00000288398 SEMA3EO15041 775 aa17.44■□□□□ 0.38
TPM1-202ENST00000288398 GNAI3P08754 354 aa17.44■□□□□ 0.38
TPM1-202ENST00000288398 CETPP11597 493 aa17.44■□□□□ 0.38
TPM1-202ENST00000288398 APOBEC3HQ6NTF7 200 aaKnown RBP17.44■□□□□ 0.38
TPM1-202ENST00000288398 OTOP1Q7RTM1 612 aa17.44■□□□□ 0.38
TPM1-202ENST00000288398 ATG9AQ7Z3C6 839 aa17.44■□□□□ 0.38
TPM1-202ENST00000288398 ERO1BQ86YB8 467 aa17.44■□□□□ 0.38
TPM1-202ENST00000288398 ZGPATQ8N5A5 531 aaKnown RBP17.44■□□□□ 0.38
TPM1-202ENST00000288398 CD99L2Q8TCZ2 262 aa17.44■□□□□ 0.38
TPM1-202ENST00000288398 ZNF341Q9BYN7 854 aa17.44■□□□□ 0.38
TPM1-202ENST00000288398 EFCC1Q9HA90 598 aa17.44■□□□□ 0.38
TPM1-202ENST00000288398 DENND2AQ9ULE3 1009 aa17.44■□□□□ 0.38
TPM1-202ENST00000288398 SPDYE5A6NIY4 337 aa17.43■□□□□ 0.38
TPM1-202ENST00000288398 IPO8O15397 1037 aaKnown RBP17.43■□□□□ 0.38
TPM1-202ENST00000288398 INTS3Q68E01 1043 aaKnown RBP17.43■□□□□ 0.38
TPM1-202ENST00000288398 CNKSR2Q8WXI2 1034 aa17.43■□□□□ 0.38
TPM1-202ENST00000288398 OTOFQ9HC10 1997 aa17.42■□□□□ 0.38
TPM1-202ENST00000288398 RPAP1Q9BWH6 1393 aaPredicted RBP17.42■□□□□ 0.38
TPM1-202ENST00000288398 SNAPC2Q13487 334 aa17.42■□□□□ 0.38
TPM1-202ENST00000288398 KIF22Q14807 665 aa17.42■□□□□ 0.38
TPM1-202ENST00000288398 FAM151AQ8WW52 585 aa17.42■□□□□ 0.38
TPM1-202ENST00000288398 BRI3BPQ8WY22 251 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms