RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 NUTM2BA6NNL0 878 aaPredicted RBP15.56■□□□□ 0.08
CCDC88A-201ENST00000263630 NUTM2EB1AL46 878 aaPredicted RBP15.56■□□□□ 0.08
CCDC88A-201ENST00000263630 ALDH1L2Q3SY69 923 aa15.56■□□□□ 0.08
CCDC88A-201ENST00000263630 HEATR3Q7Z4Q2 680 aa15.56■□□□□ 0.08
CCDC88A-201ENST00000263630 NUTM2AQ8IVF1 878 aaPredicted RBP15.56■□□□□ 0.08
CCDC88A-201ENST00000263630 ESR2Q92731 530 aa15.56■□□□□ 0.08
CCDC88A-201ENST00000263630 NACA2Q9H009 215 aa15.56■□□□□ 0.08
CCDC88A-201ENST00000263630 TFIP11Q9UBB9 837 aaKnown RBP15.56■□□□□ 0.08
CCDC88A-201ENST00000263630 ZC3H6P61129 1189 aaKnown RBP15.56■□□□□ 0.08
CCDC88A-201ENST00000263630 RTN1Q16799 776 aa15.56■□□□□ 0.08
CCDC88A-201ENST00000263630 C8orf74Q6P047 294 aa15.56■□□□□ 0.08
CCDC88A-201ENST00000263630 PFDN1O60925 122 aa15.56■□□□□ 0.08
CCDC88A-201ENST00000263630 FNBP1Q96RU3 617 aa15.56■□□□□ 0.08
CCDC88A-201ENST00000263630 EPS15L1Q9UBC2 864 aa15.56■□□□□ 0.08
CCDC88A-201ENST00000263630 RBSNQ9H1K0 784 aa15.55■□□□□ 0.08
CCDC88A-201ENST00000263630 ZBTB43O43298 467 aa15.55■□□□□ 0.08
CCDC88A-201ENST00000263630 ATP2B3Q16720 1220 aa15.55■□□□□ 0.08
CCDC88A-201ENST00000263630 AP1ARQ63HQ0 302 aa15.55■□□□□ 0.08
CCDC88A-201ENST00000263630 RTL1A6NKG5 1358 aa15.55■□□□□ 0.08
CCDC88A-201ENST00000263630 MAP2K2P36507 400 aa15.55■□□□□ 0.08
CCDC88A-201ENST00000263630 SMTNP53814 917 aa15.55■□□□□ 0.08
CCDC88A-201ENST00000263630 IRX5P78411 483 aaPredicted RBP15.55■□□□□ 0.08
CCDC88A-201ENST00000263630 DENND2CQ68D51 928 aa15.55■□□□□ 0.08
CCDC88A-201ENST00000263630 TROVE2P10155 538 aaKnown RBP eCLIP15.55■□□□□ 0.08
CCDC88A-201ENST00000263630 MRPS27Q92552 414 aaKnown RBP15.55■□□□□ 0.08
CCDC88A-201ENST00000263630 KCNH5Q8NCM2 988 aa15.55■□□□□ 0.08
CCDC88A-201ENST00000263630 MORC4Q8TE76 937 aa15.55■□□□□ 0.08
CCDC88A-201ENST00000263630 CDCA7LQ96GN5 454 aa15.55■□□□□ 0.08
CCDC88A-201ENST00000263630 TRIM4Q9C037 500 aa15.55■□□□□ 0.08
CCDC88A-201ENST00000263630 KRT79Q5XKE5 535 aa15.55■□□□□ 0.08
CCDC88A-201ENST00000263630 PROCA1Q8NCQ7 364 aaPredicted RBP15.55■□□□□ 0.08
CCDC88A-201ENST00000263630 APOEP02649 317 aa15.55■□□□□ 0.08
CCDC88A-201ENST00000263630 PTPRCP08575 1304 aa15.54■□□□□ 0.08
CCDC88A-201ENST00000263630 GOLGA8CPA6NN73 597 aa15.54■□□□□ 0.08
CCDC88A-201ENST00000263630 C6orf229H3BNL8 230 aa15.54■□□□□ 0.08
CCDC88A-201ENST00000263630 GCKP35557 465 aa15.54■□□□□ 0.08
CCDC88A-201ENST00000263630 CASC4Q6P4E1 433 aa15.54■□□□□ 0.08
CCDC88A-201ENST00000263630 HCLS1P14317 486 aaPredicted RBP15.54■□□□□ 0.08
CCDC88A-201ENST00000263630 STK24Q9Y6E0 443 aa15.54■□□□□ 0.08
CCDC88A-201ENST00000263630 NKTRP30414 1462 aaKnown RBP15.54■□□□□ 0.08
CCDC88A-201ENST00000263630 RTL9Q8NET4 1388 aa15.54■□□□□ 0.08
CCDC88A-201ENST00000263630 NAPAP54920 295 aa15.54■□□□□ 0.08
CCDC88A-201ENST00000263630 NRBF2Q96F24 287 aa15.54■□□□□ 0.08
CCDC88A-201ENST00000263630 ZSCAN22P10073 491 aaPredicted RBP15.54■□□□□ 0.08
CCDC88A-201ENST00000263630 XRCC6P12956 609 aaKnown RBP eCLIP15.54■□□□□ 0.08
CCDC88A-201ENST00000263630 ST5P78524 1137 aa15.54■□□□□ 0.08
CCDC88A-201ENST00000263630 ARMC9Q7Z3E5 817 aa15.54■□□□□ 0.08
CCDC88A-201ENST00000263630 SPATS2Q86XZ4 545 aaKnown RBP15.53■□□□□ 0.08
CCDC88A-201ENST00000263630 NAP1L4Q99733 375 aaKnown RBP15.53■□□□□ 0.08
CCDC88A-201ENST00000263630 SCHIP1Q9P0W5 487 aaPredicted RBP15.53■□□□□ 0.08
CCDC88A-201ENST00000263630 TRMT112Q9UI30 125 aaKnown RBP15.53■□□□□ 0.08
CCDC88A-201ENST00000263630 PYGLP06737 847 aa15.53■□□□□ 0.08
CCDC88A-201ENST00000263630 ALG1Q9BT22 464 aa15.53■□□□□ 0.08
CCDC88A-201ENST00000263630 LRCH2Q5VUJ6 765 aa15.53■□□□□ 0.08
CCDC88A-201ENST00000263630 SYCE1Q8N0S2 351 aa15.53■□□□□ 0.08
CCDC88A-201ENST00000263630 HSPA8P11142 646 aaKnown RBP15.53■□□□□ 0.08
CCDC88A-201ENST00000263630 PHBP35232 272 aa15.53■□□□□ 0.08
CCDC88A-201ENST00000263630 PPP2R5CQ13362 524 aa15.53■□□□□ 0.08
CCDC88A-201ENST00000263630 CFAP70Q5T0N1 1121 aa15.53■□□□□ 0.08
CCDC88A-201ENST00000263630 PPP1R9AQ9ULJ8 1098 aa15.53■□□□□ 0.08
CCDC88A-201ENST00000263630 HNRNPCL2B2RXH8 293 aa15.53■□□□□ 0.08
CCDC88A-201ENST00000263630 HNRNPCL1O60812 293 aaKnown RBP15.53■□□□□ 0.08
CCDC88A-201ENST00000263630 SSFA2P28290 1259 aa15.53■□□□□ 0.08
CCDC88A-201ENST00000263630 SLC8A1P32418 973 aa15.53■□□□□ 0.08
CCDC88A-201ENST00000263630 PPP2R3AQ06190 1150 aa15.53■□□□□ 0.08
CCDC88A-201ENST00000263630 HS1BP3Q53T59 392 aa15.53■□□□□ 0.08
CCDC88A-201ENST00000263630 AOPEPQ8N6M6 819 aa15.53■□□□□ 0.08
CCDC88A-201ENST00000263630 CABS1Q96KC9 395 aa15.53■□□□□ 0.08
CCDC88A-201ENST00000263630 LZTFL1Q9NQ48 299 aa15.53■□□□□ 0.08
CCDC88A-201ENST00000263630 PLS1Q14651 629 aa15.53■□□□□ 0.08
CCDC88A-201ENST00000263630 MAIP1Q8WWC4 291 aa15.53■□□□□ 0.08
CCDC88A-201ENST00000263630 RRP36Q96EU6 259 aaKnown RBP15.53■□□□□ 0.08
CCDC88A-201ENST00000263630 MYD88Q99836 296 aa15.53■□□□□ 0.08
CCDC88A-201ENST00000263630 GNA11P29992 359 aa15.53■□□□□ 0.08
CCDC88A-201ENST00000263630 TRIM6Q9C030 488 aaPredicted RBP15.53■□□□□ 0.08
CCDC88A-201ENST00000263630 CTTNBP2NLQ9P2B4 639 aa15.53■□□□□ 0.08
CCDC88A-201ENST00000263630 HIP1RO75146 1068 aa15.52■□□□□ 0.08
CCDC88A-201ENST00000263630 NFE2L2Q16236 605 aa15.52■□□□□ 0.08
CCDC88A-201ENST00000263630 TRIM56Q9BRZ2 755 aaKnown RBP15.52■□□□□ 0.08
CCDC88A-201ENST00000263630 KRT2P35908 639 aa15.52■□□□□ 0.08
CCDC88A-201ENST00000263630 ATP6V0A1Q93050 837 aa15.52■□□□□ 0.08
CCDC88A-201ENST00000263630 RNF40O75150 1001 aa15.52■□□□□ 0.08
CCDC88A-201ENST00000263630 TTC4O95801 387 aa15.52■□□□□ 0.08
CCDC88A-201ENST00000263630 DCAF17Q5H9S7 520 aaPredicted RBP15.52■□□□□ 0.08
CCDC88A-201ENST00000263630 RASEFQ8IZ41 740 aa15.52■□□□□ 0.08
CCDC88A-201ENST00000263630 FAM71BQ8TC56 605 aa15.52■□□□□ 0.08
CCDC88A-201ENST00000263630 CDK19Q9BWU1 502 aa15.52■□□□□ 0.08
CCDC88A-201ENST00000263630 SPDL1Q96EA4 605 aa15.52■□□□□ 0.07
CCDC88A-201ENST00000263630 RPGRIP1Q96KN7 1286 aa15.52■□□□□ 0.07
CCDC88A-201ENST00000263630 GIMAP6Q6P9H5 292 aa15.52■□□□□ 0.07
CCDC88A-201ENST00000263630 LCA5Q86VQ0 697 aa15.52■□□□□ 0.07
CCDC88A-201ENST00000263630 OGFOD1Q8N543 542 aa15.52■□□□□ 0.07
CCDC88A-201ENST00000263630 MICAL1Q8TDZ2 1067 aa15.52■□□□□ 0.07
CCDC88A-201ENST00000263630 JPH4Q96JJ6 628 aa15.52■□□□□ 0.07
CCDC88A-201ENST00000263630 PPFIA3O75145 1194 aa15.52■□□□□ 0.07
CCDC88A-201ENST00000263630 ESRRGP62508 458 aa15.52■□□□□ 0.07
CCDC88A-201ENST00000263630 RTEL1-TNFRSF6BF6WH68 1400 aa15.52■□□□□ 0.07
CCDC88A-201ENST00000263630 KRT9P35527 623 aa15.51■□□□□ 0.07
CCDC88A-201ENST00000263630 ZNF277Q9NRM2 450 aaPredicted RBP15.51■□□□□ 0.07
CCDC88A-201ENST00000263630 UQCRFS1P1P0C7P4 283 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms