RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 TPTE2P1Q5T6R2 138 aa11.09□□□□□ -0.63
CCDC40-209ENST00000573474 DHRS7BQ6IAN0 325 aaPredicted RBP11.09□□□□□ -0.63
CCDC40-209ENST00000573474 FAM219AQ8IW50 185 aa11.09□□□□□ -0.63
CCDC40-209ENST00000573474 PDZD9Q8IXQ8 264 aa11.09□□□□□ -0.63
CCDC40-209ENST00000573474 ZBTB8BQ8NAP8 495 aaPredicted RBP11.09□□□□□ -0.63
CCDC40-209ENST00000573474 RNASE11Q8TAA1 199 aaKnown RBP11.09□□□□□ -0.63
CCDC40-209ENST00000573474 GPR146Q96CH1 333 aa11.09□□□□□ -0.63
CCDC40-209ENST00000573474 WDR89Q96FK6 387 aaPredicted RBP11.09□□□□□ -0.63
CCDC40-209ENST00000573474 RANBP3Q9H6Z4 567 aaPredicted RBP11.09□□□□□ -0.63
CCDC40-209ENST00000573474 HIF1ANQ9NWT6 349 aa11.09□□□□□ -0.63
CCDC40-209ENST00000573474 GSKIPQ9P0R6 139 aa11.09□□□□□ -0.63
CCDC40-209ENST00000573474 MED13LQ71F56 2210 aa11.08□□□□□ -0.64
CCDC40-209ENST00000573474 A0A1B0GU03 582 aa11.08□□□□□ -0.64
CCDC40-209ENST00000573474 A0A1W2PRD5 423 aa11.08□□□□□ -0.64
CCDC40-209ENST00000573474 A0A1W2PRF3 423 aa11.08□□□□□ -0.64
CCDC40-209ENST00000573474 A0A1W2PRM7 423 aa11.08□□□□□ -0.64
CCDC40-209ENST00000573474 CRYZL1O95825 349 aa11.08□□□□□ -0.64
CCDC40-209ENST00000573474 KRASP01116 189 aa11.08□□□□□ -0.64
CCDC40-209ENST00000573474 IGHV4-31P0DP07 118 aa11.08□□□□□ -0.64
CCDC40-209ENST00000573474 GZMKP49863 264 aa11.08□□□□□ -0.64
CCDC40-209ENST00000573474 AKR1C2P52895 323 aa11.08□□□□□ -0.64
CCDC40-209ENST00000573474 FGL1Q08830 312 aa11.08□□□□□ -0.64
CCDC40-209ENST00000573474 IL15RAQ13261 267 aa11.08□□□□□ -0.64
CCDC40-209ENST00000573474 TMEM249Q2WGJ8 235 aa11.08□□□□□ -0.64
CCDC40-209ENST00000573474 THOC7Q6I9Y2 204 aaKnown RBP11.08□□□□□ -0.64
CCDC40-209ENST00000573474 PDPNQ86YL7 162 aa11.08□□□□□ -0.64
CCDC40-209ENST00000573474 R3HDM4Q96D70 268 aa11.08□□□□□ -0.64
CCDC40-209ENST00000573474 C7orf69Q9H7B7 122 aa11.08□□□□□ -0.64
CCDC40-209ENST00000573474 TBL2Q9Y4P3 447 aaKnown RBP11.08□□□□□ -0.64
CCDC40-209ENST00000573474 MMP24Q9Y5R2 645 aa11.08□□□□□ -0.64
CCDC40-209ENST00000573474 IGHV1-3A0A0C4DH29 117 aa11.07□□□□□ -0.64
CCDC40-209ENST00000573474 OOSP1A8MZH6 123 aa11.07□□□□□ -0.64
CCDC40-209ENST00000573474 H7C2Y5 167 aa11.07□□□□□ -0.64
CCDC40-209ENST00000573474 J3QLI3 93 aa11.07□□□□□ -0.64
CCDC40-209ENST00000573474 HRASP01112 189 aa11.07□□□□□ -0.64
CCDC40-209ENST00000573474 NQO2P16083 231 aa11.07□□□□□ -0.64
CCDC40-209ENST00000573474 PSMB6P28072 239 aa11.07□□□□□ -0.64
CCDC40-209ENST00000573474 G6PCP35575 357 aa11.07□□□□□ -0.64
CCDC40-209ENST00000573474 RAB13P51153 203 aa11.07□□□□□ -0.64
CCDC40-209ENST00000573474 ERVK-16P61578 105 aa11.07□□□□□ -0.64
CCDC40-209ENST00000573474 MIDNQ504T8 468 aa11.07□□□□□ -0.64
CCDC40-209ENST00000573474 Q5BKY6 102 aa11.07□□□□□ -0.64
CCDC40-209ENST00000573474 LDLRAD2Q5SZI1 272 aa11.07□□□□□ -0.64
CCDC40-209ENST00000573474 MOB3BQ86TA1 216 aa11.07□□□□□ -0.64
CCDC40-209ENST00000573474 NOXA1Q86UR1 476 aa11.07□□□□□ -0.64
CCDC40-209ENST00000573474 OR8H3Q8N146 312 aa11.07□□□□□ -0.64
CCDC40-209ENST00000573474 MAPK1IP1LQ8NDC0 245 aa11.07□□□□□ -0.64
CCDC40-209ENST00000573474 WFDC11Q8NEX6 87 aa11.07□□□□□ -0.64
CCDC40-209ENST00000573474 PPP1R1CQ8WVI7 109 aa11.07□□□□□ -0.64
CCDC40-209ENST00000573474 AIFM2Q9BRQ8 373 aa11.07□□□□□ -0.64
CCDC40-209ENST00000573474 ASH1LQ9NR48 2969 aaKnown RBP11.07□□□□□ -0.64
CCDC40-209ENST00000573474 WASHC3Q9Y3C0 194 aa11.07□□□□□ -0.64
CCDC40-209ENST00000573474 HECTD1Q9ULT8 2610 aa11.07□□□□□ -0.64
CCDC40-209ENST00000573474 ABCA2Q9BZC7 2435 aa11.06□□□□□ -0.64
CCDC40-209ENST00000573474 A0A0G2JRQ6 117 aa11.06□□□□□ -0.64
CCDC40-209ENST00000573474 CENPVL3A0A0U1RRI6 287 aa11.06□□□□□ -0.64
CCDC40-209ENST00000573474 MARCH11A6NNE9 402 aa11.06□□□□□ -0.64
CCDC40-209ENST00000573474 G3V3Q6 166 aa11.06□□□□□ -0.64
CCDC40-209ENST00000573474 TGFAP01135 160 aa11.06□□□□□ -0.64
CCDC40-209ENST00000573474 P0C879 139 aa11.06□□□□□ -0.64
CCDC40-209ENST00000573474 EIF2B2P49770 351 aaKnown RBP11.06□□□□□ -0.64
CCDC40-209ENST00000573474 ARHGDIBP52566 201 aa11.06□□□□□ -0.64
CCDC40-209ENST00000573474 SMCO1Q147U7 214 aa11.06□□□□□ -0.64
CCDC40-209ENST00000573474 TMEM177Q53S58 311 aa11.06□□□□□ -0.64
CCDC40-209ENST00000573474 CCDC144NLQ6NUI1 221 aa11.06□□□□□ -0.64
CCDC40-209ENST00000573474 H2BFWTQ7Z2G1 175 aa11.06□□□□□ -0.64
CCDC40-209ENST00000573474 LHFPL4Q7Z7J7 247 aa11.06□□□□□ -0.64
CCDC40-209ENST00000573474 DMBX1Q8NFW5 382 aa11.06□□□□□ -0.64
CCDC40-209ENST00000573474 OR4D5Q8NGN0 318 aa11.06□□□□□ -0.64
CCDC40-209ENST00000573474 OSR1Q8TAX0 266 aaPredicted RBP11.06□□□□□ -0.64
CCDC40-209ENST00000573474 FLYWCH2Q96CP2 140 aaKnown RBP11.06□□□□□ -0.64
CCDC40-209ENST00000573474 MALSU1Q96EH3 234 aa11.06□□□□□ -0.64
CCDC40-209ENST00000573474 HYLS1Q96M11 299 aa11.06□□□□□ -0.64
CCDC40-209ENST00000573474 ZFP57Q9NU63 452 aa11.06□□□□□ -0.64
CCDC40-209ENST00000573474 HILPDAQ9Y5L2 63 aa11.06□□□□□ -0.64
CCDC40-209ENST00000573474 PDZD2O15018 2839 aa11.05□□□□□ -0.64
CCDC40-209ENST00000573474 IGHV1-69DA0A0B4J2H0 117 aa11.05□□□□□ -0.64
CCDC40-209ENST00000573474 A0A1W2PPI3 338 aa11.05□□□□□ -0.64
CCDC40-209ENST00000573474 FAM90A9PA6NNJ1 464 aa11.05□□□□□ -0.64
CCDC40-209ENST00000573474 NPFFO15130 113 aa11.05□□□□□ -0.64
CCDC40-209ENST00000573474 PITX3O75364 302 aa11.05□□□□□ -0.64
CCDC40-209ENST00000573474 MPC2O95563 127 aa11.05□□□□□ -0.64
CCDC40-209ENST00000573474 IGHV1-69P01742 117 aa11.05□□□□□ -0.64
CCDC40-209ENST00000573474 IGKV1-16P04430 117 aa11.05□□□□□ -0.64
CCDC40-209ENST00000573474 POU2AF1Q16633 256 aa11.05□□□□□ -0.64
CCDC40-209ENST00000573474 CYB5R2Q6BCY4 276 aa11.05□□□□□ -0.64
CCDC40-209ENST00000573474 Q6ZRM9 215 aa11.05□□□□□ -0.64
CCDC40-209ENST00000573474 OR4C13Q8NGP0 309 aa11.05□□□□□ -0.64
CCDC40-209ENST00000573474 OR1S1Q8NH92 325 aa11.05□□□□□ -0.64
CCDC40-209ENST00000573474 COA4Q9NYJ1 87 aa11.05□□□□□ -0.64
CCDC40-209ENST00000573474 CACNG5Q9UF02 275 aa11.05□□□□□ -0.64
CCDC40-209ENST00000573474 VPS13CQ709C8 3753 aa11.04□□□□□ -0.64
CCDC40-209ENST00000573474 TRAV14DV4A0A0A6YYC5 116 aa11.04□□□□□ -0.64
CCDC40-209ENST00000573474 SHOXO15266 292 aa11.04□□□□□ -0.64
CCDC40-209ENST00000573474 MBPP02686 304 aaPredicted RBP11.04□□□□□ -0.64
CCDC40-209ENST00000573474 PET100P0DJ07 73 aa11.04□□□□□ -0.64
CCDC40-209ENST00000573474 SLC25A4P12235 298 aa11.04□□□□□ -0.64
CCDC40-209ENST00000573474 CD1BP29016 333 aa11.04□□□□□ -0.64
CCDC40-209ENST00000573474 RPS16P62249 146 aaKnown RBP11.04□□□□□ -0.64
CCDC40-209ENST00000573474 RAB32Q13637 225 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms