RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 BAGE3Q86Y29 109 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 BAGE2Q86Y30 109 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 TMPRSS5Q9H3S3 457 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 CFAP54Q96N23 3096 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 MARCH11A6NNE9 402 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 NDUFB3O43676 98 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 NAPSAO96009 420 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 REG1BP48304 166 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 PIP4P1Q86T03 277 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 LRTM2Q8N967 370 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 OR4D5Q8NGN0 318 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 ZDHHC16Q969W1 377 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 SNX22Q96L94 193 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 CTXND1A0A1B0GTU2 59 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 hADV38S2A0JD32 116 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 C17orf98A8MV24 154 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 SPINK4O60575 86 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 ADCYAP1P18509 176 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 ID3Q02535 119 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 SSX2Q16385 188 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 RNFT1Q5M7Z0 435 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 C20orf204Q6ZNR8 217 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 DTX1Q86Y01 620 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 RNF138Q8WVD3 245 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 CORO2AQ92828 525 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 LSM10Q969L4 123 aaKnown RBP9.82□□□□□ -0.84
NPHP4-204ENST00000460696 SMDT1Q9H4I9 107 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 IFT22Q9H7X7 185 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 CRIM1Q9NZV1 1036 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 PHOX2AO14813 284 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 HSPB1P04792 205 aaKnown RBP9.82□□□□□ -0.84
NPHP4-204ENST00000460696 HES1Q14469 280 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 TBR1Q16650 682 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 OR13A1Q8NGR1 328 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 NAT8Q9UHE5 227 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 TRAV20A0A0B4J274 112 aa9.81□□□□□ -0.84
NPHP4-204ENST00000460696 ZNF503-AS2A6NEH8 195 aa9.81□□□□□ -0.84
NPHP4-204ENST00000460696 CNIH1O95406 144 aa9.81□□□□□ -0.84
NPHP4-204ENST00000460696 GYPAP02724 150 aa9.81□□□□□ -0.84
NPHP4-204ENST00000460696 FABP1P07148 127 aa9.81□□□□□ -0.84
NPHP4-204ENST00000460696 PGA5P0DJD9 388 aa9.81□□□□□ -0.84
NPHP4-204ENST00000460696 CD1BP29016 333 aa9.81□□□□□ -0.84
NPHP4-204ENST00000460696 LINC00518Q8N0U6 118 aa9.81□□□□□ -0.84
NPHP4-204ENST00000460696 DOK5Q9P104 306 aa9.81□□□□□ -0.84
NPHP4-204ENST00000460696 FOXF2Q12947 444 aa9.81□□□□□ -0.84
NPHP4-204ENST00000460696 TIGITQ495A1 244 aa9.81□□□□□ -0.84
NPHP4-204ENST00000460696 RCC1LQ96I51 464 aaKnown RBP9.81□□□□□ -0.84
NPHP4-204ENST00000460696 SH2D2AQ9NP31 389 aa9.81□□□□□ -0.84
NPHP4-204ENST00000460696 TRGC2P03986 189 aa9.81□□□□□ -0.84
NPHP4-204ENST00000460696 MEF2BQ02080 365 aaPredicted RBP9.81□□□□□ -0.84
NPHP4-204ENST00000460696 PRR30Q53SZ7 412 aaPredicted RBP9.81□□□□□ -0.84
NPHP4-204ENST00000460696 LRRC10Q5BKY1 277 aa9.81□□□□□ -0.84
NPHP4-204ENST00000460696 FAM78BQ5VT40 261 aa9.81□□□□□ -0.84
NPHP4-204ENST00000460696 ACP7Q6ZNF0 438 aa9.81□□□□□ -0.84
NPHP4-204ENST00000460696 RAB24Q969Q5 203 aa9.81□□□□□ -0.84
NPHP4-204ENST00000460696 ZNF251Q9BRH9 671 aa9.81□□□□□ -0.84
NPHP4-204ENST00000460696 GP6Q9HCN6 339 aa9.81□□□□□ -0.84
NPHP4-204ENST00000460696 DEFA4P12838 97 aa9.8□□□□□ -0.84
NPHP4-204ENST00000460696 WT1P19544 449 aaPredicted RBP9.8□□□□□ -0.84
NPHP4-204ENST00000460696 SUB1P53999 127 aaKnown RBP eCLIP9.8□□□□□ -0.84
NPHP4-204ENST00000460696 B2MP61769 119 aa9.8□□□□□ -0.84
NPHP4-204ENST00000460696 HERPUD1Q15011 391 aa9.8□□□□□ -0.84
NPHP4-204ENST00000460696 ABHD12Q8N2K0 398 aa9.8□□□□□ -0.84
NPHP4-204ENST00000460696 SAP30LQ9HAJ7 183 aa9.8□□□□□ -0.84
NPHP4-204ENST00000460696 ANAPC10Q9UM13 185 aa9.8□□□□□ -0.84
NPHP4-204ENST00000460696 TRAV38-1A0A0B4J264 116 aa9.8□□□□□ -0.84
NPHP4-204ENST00000460696 PSPNO60542 156 aa9.8□□□□□ -0.84
NPHP4-204ENST00000460696 RAMP3O60896 148 aa9.8□□□□□ -0.84
NPHP4-204ENST00000460696 CYB5R3P00387 301 aaPredicted RBP9.8□□□□□ -0.84
NPHP4-204ENST00000460696 CD55P08174 381 aa9.8□□□□□ -0.84
NPHP4-204ENST00000460696 SNRPCP09234 159 aaKnown RBP9.8□□□□□ -0.84
NPHP4-204ENST00000460696 HOXB1P14653 301 aaPredicted RBP9.8□□□□□ -0.84
NPHP4-204ENST00000460696 NPY1RP25929 384 aa9.8□□□□□ -0.84
NPHP4-204ENST00000460696 IL3RAP26951 378 aa9.8□□□□□ -0.84
NPHP4-204ENST00000460696 ZNF324BQ6AW86 544 aaPredicted RBP9.8□□□□□ -0.84
NPHP4-204ENST00000460696 SLX1AQ9BQ83 275 aa9.8□□□□□ -0.84
NPHP4-204ENST00000460696 TGIF2-C20orf24A0A0A6YYL0 155 aa9.8□□□□□ -0.84
NPHP4-204ENST00000460696 C9JQL5 133 aa9.8□□□□□ -0.84
NPHP4-204ENST00000460696 HPRT1P00492 218 aa9.8□□□□□ -0.84
NPHP4-204ENST00000460696 IGLV3-1P01715 115 aa9.8□□□□□ -0.84
NPHP4-204ENST00000460696 EGR1P18146 543 aa9.8□□□□□ -0.84
NPHP4-204ENST00000460696 ERVFC1-1P60608 527 aa9.8□□□□□ -0.84
NPHP4-204ENST00000460696 SSTP61278 116 aa9.8□□□□□ -0.84
NPHP4-204ENST00000460696 HFEQ30201 348 aa9.8□□□□□ -0.84
NPHP4-204ENST00000460696 RPL39P5Q59GN2 51 aa9.8□□□□□ -0.84
NPHP4-204ENST00000460696 PRR27Q6MZM9 219 aa9.8□□□□□ -0.84
NPHP4-204ENST00000460696 ASCL4Q6XD76 172 aa9.8□□□□□ -0.84
NPHP4-204ENST00000460696 TMEM171Q8WVE6 324 aa9.8□□□□□ -0.84
NPHP4-204ENST00000460696 BARX1Q9HBU1 254 aaPredicted RBP9.8□□□□□ -0.84
NPHP4-204ENST00000460696 CENPEQ02224 2701 aa9.8□□□□□ -0.84
NPHP4-204ENST00000460696 K7N7A8 449 aa9.79□□□□□ -0.84
NPHP4-204ENST00000460696 TAS2R45P59539 299 aa9.79□□□□□ -0.84
NPHP4-204ENST00000460696 FAM27E3Q08E93 113 aa9.79□□□□□ -0.84
NPHP4-204ENST00000460696 BATFQ16520 125 aa9.79□□□□□ -0.84
NPHP4-204ENST00000460696 WDR25Q64LD2 544 aaPredicted RBP9.79□□□□□ -0.84
NPHP4-204ENST00000460696 SLC35E4Q6ICL7 350 aa9.79□□□□□ -0.84
NPHP4-204ENST00000460696 OR4P4Q8NGL7 312 aa9.79□□□□□ -0.84
NPHP4-204ENST00000460696 WDR61Q9GZS3 305 aaKnown RBP9.79□□□□□ -0.84
NPHP4-204ENST00000460696 MIOXQ9UGB7 285 aa9.79□□□□□ -0.84
NPHP4-204ENST00000460696 C16orf97H3BN30 126 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms