RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 ZNF66Q6ZN08 573 aa18.35■□□□□ 0.53
SHMT1-201ENST00000316694 NEIL1Q96FI4 390 aaPredicted RBP18.35■□□□□ 0.53
SHMT1-201ENST00000316694 PLPPR2Q96GM1 343 aa18.35■□□□□ 0.53
SHMT1-201ENST00000316694 TAAR6Q96RI8 345 aa18.35■□□□□ 0.53
SHMT1-201ENST00000316694 ZFHX4Q86UP3 3567 aa18.35■□□□□ 0.53
SHMT1-201ENST00000316694 XKRY2A2RUG3 117 aa18.35■□□□□ 0.53
SHMT1-201ENST00000316694 HRASP01112 189 aa18.35■□□□□ 0.53
SHMT1-201ENST00000316694 CNEP1R1Q8N9A8 125 aa18.35■□□□□ 0.53
SHMT1-201ENST00000316694 OR1P1Q8NH06 330 aa18.35■□□□□ 0.53
SHMT1-201ENST00000316694 MSL2Q9HCI7 577 aa18.35■□□□□ 0.53
SHMT1-201ENST00000316694 C1QTNF9BB2RNN3 333 aa18.34■□□□□ 0.53
SHMT1-201ENST00000316694 C11orf94C9JXX5 98 aa18.34■□□□□ 0.53
SHMT1-201ENST00000316694 C17orf112F2Z3M2 114 aa18.34■□□□□ 0.53
SHMT1-201ENST00000316694 CDC34P49427 236 aaPredicted RBP18.34■□□□□ 0.53
SHMT1-201ENST00000316694 DCTN5Q9BTE1 182 aa18.34■□□□□ 0.53
SHMT1-201ENST00000316694 QTRT1Q9BXR0 403 aaKnown RBP18.34■□□□□ 0.53
SHMT1-201ENST00000316694 TIMM8AO60220 97 aaPredicted RBP18.34■□□□□ 0.53
SHMT1-201ENST00000316694 HES3Q5TGS1 186 aa18.34■□□□□ 0.53
SHMT1-201ENST00000316694 WDR82Q6UXN9 313 aa18.34■□□□□ 0.53
SHMT1-201ENST00000316694 TGIF2LYQ8IUE0 185 aa18.34■□□□□ 0.53
SHMT1-201ENST00000316694 CXXC4Q9H2H0 198 aa18.34■□□□□ 0.53
SHMT1-201ENST00000316694 AMBPP02760 352 aa18.33■□□□□ 0.53
SHMT1-201ENST00000316694 PKIAP61925 76 aa18.33■□□□□ 0.53
SHMT1-201ENST00000316694 EDDM3AQ14507 147 aa18.33■□□□□ 0.53
SHMT1-201ENST00000316694 GCSAMLQ5JQS6 135 aa18.33■□□□□ 0.53
SHMT1-201ENST00000316694 INO80CQ6PI98 192 aaPredicted RBP18.33■□□□□ 0.53
SHMT1-201ENST00000316694 C14orf144Q96I85 54 aa18.33■□□□□ 0.53
SHMT1-201ENST00000316694 TRIB1Q96RU8 372 aa18.33■□□□□ 0.53
SHMT1-201ENST00000316694 TSTD3H0UI37 97 aa18.33■□□□□ 0.52
SHMT1-201ENST00000316694 CRYAAP02489 173 aa18.33■□□□□ 0.52
SHMT1-201ENST00000316694 FABP6P51161 128 aa18.33■□□□□ 0.52
SHMT1-201ENST00000316694 UBE2G2P60604 165 aa18.33■□□□□ 0.52
SHMT1-201ENST00000316694 VWC2Q2TAL6 325 aa18.33■□□□□ 0.52
SHMT1-201ENST00000316694 ZDHHC11Q9H8X9 412 aa18.33■□□□□ 0.52
SHMT1-201ENST00000316694 TRAV38-1A0A0B4J264 116 aa18.32■□□□□ 0.52
SHMT1-201ENST00000316694 EGR1P18146 543 aa18.32■□□□□ 0.52
SHMT1-201ENST00000316694 HOXC12P31275 282 aa18.32■□□□□ 0.52
SHMT1-201ENST00000316694 ACOT6Q3I5F7 207 aaPredicted RBP18.32■□□□□ 0.52
SHMT1-201ENST00000316694 PLA2G2CQ5R387 149 aa18.32■□□□□ 0.52
SHMT1-201ENST00000316694 DNLZQ5SXM8 178 aa18.32■□□□□ 0.52
SHMT1-201ENST00000316694 SSX9Q7RTT3 188 aa18.32■□□□□ 0.52
SHMT1-201ENST00000316694 TMEM37Q8WXS4 190 aa18.32■□□□□ 0.52
SHMT1-201ENST00000316694 R3HDM4Q96D70 268 aa18.32■□□□□ 0.52
SHMT1-201ENST00000316694 ANAPC16Q96DE5 110 aa18.32■□□□□ 0.52
SHMT1-201ENST00000316694 HSD17B10Q99714 261 aaKnown RBP18.32■□□□□ 0.52
SHMT1-201ENST00000316694 AURKAIP1Q9NWT8 199 aaPredicted RBP18.32■□□□□ 0.52
SHMT1-201ENST00000316694 NPPCP23582 126 aa18.32■□□□□ 0.52
SHMT1-201ENST00000316694 CHRNA7P36544 502 aa18.32■□□□□ 0.52
SHMT1-201ENST00000316694 FAM3BP58499 235 aaPredicted RBP18.32■□□□□ 0.52
SHMT1-201ENST00000316694 GNB2P62879 340 aa18.32■□□□□ 0.52
SHMT1-201ENST00000316694 OR2T10Q8NGZ9 312 aa18.32■□□□□ 0.52
SHMT1-201ENST00000316694 FUT9Q9Y231 359 aa18.32■□□□□ 0.52
SHMT1-201ENST00000316694 C15orf62A8K5M9 175 aa18.31■□□□□ 0.52
SHMT1-201ENST00000316694 DDTP30046 118 aa18.31■□□□□ 0.52
SHMT1-201ENST00000316694 EDDM3BP56851 147 aa18.31■□□□□ 0.52
SHMT1-201ENST00000316694 CST9LP1Q5W188 147 aa18.31■□□□□ 0.52
SHMT1-201ENST00000316694 UNQ6494/PRO21346Q6UXR6 183 aa18.31■□□□□ 0.52
SHMT1-201ENST00000316694 Q6ZT83 130 aa18.31■□□□□ 0.52
SHMT1-201ENST00000316694 FAM214BQ7L5A3 538 aa18.31■□□□□ 0.52
SHMT1-201ENST00000316694 TMEM178AQ8NBL3 297 aa18.31■□□□□ 0.52
SHMT1-201ENST00000316694 FAM234AQ9H0X4 552 aa18.31■□□□□ 0.52
SHMT1-201ENST00000316694 WASF3Q9UPY6 502 aa18.31■□□□□ 0.52
SHMT1-201ENST00000316694 OR9G9P0C7N8 305 aa18.31■□□□□ 0.52
SHMT1-201ENST00000316694 TCTEX1D1Q8N7M0 179 aa18.31■□□□□ 0.52
SHMT1-201ENST00000316694 CD1BP29016 333 aa18.3■□□□□ 0.52
SHMT1-201ENST00000316694 FOXF2Q12947 444 aa18.3■□□□□ 0.52
SHMT1-201ENST00000316694 SMIM21Q3B7S5 101 aa18.3■□□□□ 0.52
SHMT1-201ENST00000316694 PRR7Q8TB68 274 aa18.3■□□□□ 0.52
SHMT1-201ENST00000316694 M0R296 226 aa18.3■□□□□ 0.52
SHMT1-201ENST00000316694 SPINT2O43291 252 aa18.3■□□□□ 0.52
SHMT1-201ENST00000316694 FCGR3BO75015 233 aa18.3■□□□□ 0.52
SHMT1-201ENST00000316694 OR5R1Q8NH85 324 aa18.3■□□□□ 0.52
SHMT1-201ENST00000316694 LURAP1Q96LR2 239 aa18.3■□□□□ 0.52
SHMT1-201ENST00000316694 HCFC1P51610 2035 aa18.3■□□□□ 0.52
SHMT1-201ENST00000316694 A0A087X0M5 115 aa18.29■□□□□ 0.52
SHMT1-201ENST00000316694 A0A1B0GX30 115 aa18.29■□□□□ 0.52
SHMT1-201ENST00000316694 GALR2O43603 387 aaPredicted RBP18.29■□□□□ 0.52
SHMT1-201ENST00000316694 GPR12P47775 334 aa18.29■□□□□ 0.52
SHMT1-201ENST00000316694 ZNF600Q6ZNG1 722 aa18.29■□□□□ 0.52
SHMT1-201ENST00000316694 OR6C3Q9NZP0 311 aa18.29■□□□□ 0.52
SHMT1-201ENST00000316694 CLCF1Q9UBD9 225 aa18.29■□□□□ 0.52
SHMT1-201ENST00000316694 WISP2O76076 250 aa18.29■□□□□ 0.52
SHMT1-201ENST00000316694 VENTXO95231 258 aa18.29■□□□□ 0.52
SHMT1-201ENST00000316694 IFNA10P01566 189 aa18.29■□□□□ 0.52
SHMT1-201ENST00000316694 GZMBP10144 247 aa18.29■□□□□ 0.52
SHMT1-201ENST00000316694 ATP5G3P48201 142 aa18.29■□□□□ 0.52
SHMT1-201ENST00000316694 JOSD1Q15040 202 aaPredicted RBP18.29■□□□□ 0.52
SHMT1-201ENST00000316694 Q8N7P7 452 aa18.29■□□□□ 0.52
SHMT1-201ENST00000316694 TMEM170AQ8WVE7 144 aa18.29■□□□□ 0.52
SHMT1-201ENST00000316694 MEGF10Q96KG7 1140 aa18.29■□□□□ 0.52
SHMT1-201ENST00000316694 DVL1O14640 695 aa18.28■□□□□ 0.52
SHMT1-201ENST00000316694 IGHV3-13P01766 116 aa18.28■□□□□ 0.52
SHMT1-201ENST00000316694 IGHV3-7P01780 117 aa18.28■□□□□ 0.52
SHMT1-201ENST00000316694 NUBP1P53384 320 aa18.28■□□□□ 0.52
SHMT1-201ENST00000316694 PRSS8Q16651 343 aa18.28■□□□□ 0.52
SHMT1-201ENST00000316694 VKORC1L1Q8N0U8 176 aa18.28■□□□□ 0.52
SHMT1-201ENST00000316694 DERL1Q9BUN8 251 aa18.28■□□□□ 0.52
SHMT1-201ENST00000316694 PATZ1Q9HBE1 687 aaKnown RBP18.28■□□□□ 0.52
SHMT1-201ENST00000316694 WDR83OSQ9Y284 106 aa18.28■□□□□ 0.52
SHMT1-201ENST00000316694 A0A1W2PPV4 95 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 117.6 ms