RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 ARL11Q969Q4 196 aa13.59□□□□□ -0.23
SDCBP-201ENST00000260130 OCSTAMPQ9BR26 566 aa13.59□□□□□ -0.23
SDCBP-201ENST00000260130 C19orf24Q9BVV8 132 aa13.59□□□□□ -0.23
SDCBP-201ENST00000260130 MEGF9Q9H1U4 602 aa13.59□□□□□ -0.23
SDCBP-201ENST00000260130 KIAA2026Q5HYC2 2103 aa13.59□□□□□ -0.23
SDCBP-201ENST00000260130 SFT2D2O95562 160 aa13.58□□□□□ -0.24
SDCBP-201ENST00000260130 RNASE1P07998 156 aaKnown RBP13.58□□□□□ -0.24
SDCBP-201ENST00000260130 TMEM50BP56557 158 aa13.58□□□□□ -0.24
SDCBP-201ENST00000260130 BAP18Q8IXM2 172 aa13.58□□□□□ -0.24
SDCBP-201ENST00000260130 OR5H2Q8NGV7 314 aa13.58□□□□□ -0.24
SDCBP-201ENST00000260130 RNF141Q8WVD5 230 aa13.58□□□□□ -0.24
SDCBP-201ENST00000260130 TNFRSF19Q9NS68 423 aa13.58□□□□□ -0.24
SDCBP-201ENST00000260130 HSF4Q9ULV5 492 aa13.58□□□□□ -0.24
SDCBP-201ENST00000260130 TMEM218A2RU14 115 aa13.58□□□□□ -0.24
SDCBP-201ENST00000260130 FOXI3A8MTJ6 420 aaPredicted RBP13.58□□□□□ -0.24
SDCBP-201ENST00000260130 C15orf65H3BRN8 121 aa13.58□□□□□ -0.24
SDCBP-201ENST00000260130 IGHV4-59P01825 116 aa13.58□□□□□ -0.24
SDCBP-201ENST00000260130 PLAC9Q5JTB6 97 aa13.58□□□□□ -0.24
SDCBP-201ENST00000260130 SVBPQ8N300 66 aa13.58□□□□□ -0.24
SDCBP-201ENST00000260130 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.58□□□□□ -0.24
SDCBP-201ENST00000260130 MRPL30Q8TCC3 161 aaKnown RBP13.58□□□□□ -0.24
SDCBP-201ENST00000260130 MALSU1Q96EH3 234 aa13.58□□□□□ -0.24
SDCBP-201ENST00000260130 TSNAXQ99598 290 aaKnown RBP13.58□□□□□ -0.24
SDCBP-201ENST00000260130 ZNF286AQ9HBT8 521 aa13.58□□□□□ -0.24
SDCBP-201ENST00000260130 RCC1P18754 421 aaPredicted RBP13.57□□□□□ -0.24
SDCBP-201ENST00000260130 LTC4SQ16873 150 aa13.57□□□□□ -0.24
SDCBP-201ENST00000260130 LDLRAD2Q5SZI1 272 aa13.57□□□□□ -0.24
SDCBP-201ENST00000260130 MINOS1Q5TGZ0 78 aa13.57□□□□□ -0.24
SDCBP-201ENST00000260130 ZNF596Q8TC21 504 aa13.57□□□□□ -0.24
SDCBP-201ENST00000260130 RNF126Q9BV68 326 aa13.57□□□□□ -0.24
SDCBP-201ENST00000260130 C5orf66Q9H5L9 145 aa13.57□□□□□ -0.24
SDCBP-201ENST00000260130 MINOS1-NBL1R4GNA1 71 aa13.57□□□□□ -0.24
SDCBP-201ENST00000260130 FAM74A7A6NL05 159 aa13.56□□□□□ -0.24
SDCBP-201ENST00000260130 IGLV1-47P01700 117 aa13.56□□□□□ -0.24
SDCBP-201ENST00000260130 PAX6P26367 422 aa13.56□□□□□ -0.24
SDCBP-201ENST00000260130 PRRX1P54821 245 aa13.56□□□□□ -0.24
SDCBP-201ENST00000260130 ARFRP1Q13795 201 aa13.56□□□□□ -0.24
SDCBP-201ENST00000260130 FAM74A3Q4VXF1 159 aa13.56□□□□□ -0.24
SDCBP-201ENST00000260130 UTF1Q5T230 341 aa13.56□□□□□ -0.24
SDCBP-201ENST00000260130 TRAT1Q6PIZ9 186 aa13.56□□□□□ -0.24
SDCBP-201ENST00000260130 OR4P4Q8NGL7 312 aa13.56□□□□□ -0.24
SDCBP-201ENST00000260130 ARHGAP5-AS1Q96IT6 56 aa13.56□□□□□ -0.24
SDCBP-201ENST00000260130 RAB9BQ9NP90 201 aa13.56□□□□□ -0.24
SDCBP-201ENST00000260130 MBNL3Q9NUK0 354 aaKnown RBP13.56□□□□□ -0.24
SDCBP-201ENST00000260130 C12orf77C9JDV5 145 aa13.56□□□□□ -0.24
SDCBP-201ENST00000260130 MFNGO00587 321 aa13.56□□□□□ -0.24
SDCBP-201ENST00000260130 LYL1P12980 280 aa13.56□□□□□ -0.24
SDCBP-201ENST00000260130 HTR1DP28221 377 aa13.56□□□□□ -0.24
SDCBP-201ENST00000260130 TAS2R46P59540 309 aa13.56□□□□□ -0.24
SDCBP-201ENST00000260130 FLI1Q01543 452 aaPredicted RBP13.56□□□□□ -0.24
SDCBP-201ENST00000260130 PRSS54Q6PEW0 395 aa13.56□□□□□ -0.24
SDCBP-201ENST00000260130 IQCF2Q8IXL9 164 aa13.56□□□□□ -0.24
SDCBP-201ENST00000260130 OR52M1Q8NGK5 317 aa13.56□□□□□ -0.24
SDCBP-201ENST00000260130 OR9G1Q8NH87 305 aa13.56□□□□□ -0.24
SDCBP-201ENST00000260130 UBALD1Q8TB05 177 aa13.56□□□□□ -0.24
SDCBP-201ENST00000260130 TMEM230Q96A57 120 aa13.56□□□□□ -0.24
SDCBP-201ENST00000260130 SSX3Q99909 188 aa13.56□□□□□ -0.24
SDCBP-201ENST00000260130 PECRQ9BY49 303 aa13.56□□□□□ -0.24
SDCBP-201ENST00000260130 SPINT2O43291 252 aa13.55□□□□□ -0.24
SDCBP-201ENST00000260130 PET100P0DJ07 73 aa13.55□□□□□ -0.24
SDCBP-201ENST00000260130 SSX2Q16385 188 aa13.55□□□□□ -0.24
SDCBP-201ENST00000260130 DYNAPQ8N1N2 210 aa13.55□□□□□ -0.24
SDCBP-201ENST00000260130 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.55□□□□□ -0.24
SDCBP-201ENST00000260130 KCNIP1Q9NZI2 227 aa13.55□□□□□ -0.24
SDCBP-201ENST00000260130 AK3Q9UIJ7 227 aa13.55□□□□□ -0.24
SDCBP-201ENST00000260130 BTBD17A6NE02 478 aa13.55□□□□□ -0.24
SDCBP-201ENST00000260130 F2RL2O00254 374 aa13.55□□□□□ -0.24
SDCBP-201ENST00000260130 NAPSAO96009 420 aa13.55□□□□□ -0.24
SDCBP-201ENST00000260130 ARHGDIBP52566 201 aa13.55□□□□□ -0.24
SDCBP-201ENST00000260130 PRR18Q8N4B5 295 aa13.55□□□□□ -0.24
SDCBP-201ENST00000260130 LEAP2Q969E1 77 aa13.55□□□□□ -0.24
SDCBP-201ENST00000260130 RIMS4Q9H426 269 aaPredicted RBP13.55□□□□□ -0.24
SDCBP-201ENST00000260130 TAF9BQ9HBM6 251 aa13.55□□□□□ -0.24
SDCBP-201ENST00000260130 CYTL1Q9NRR1 136 aa13.55□□□□□ -0.24
SDCBP-201ENST00000260130 DPM3Q9P2X0 92 aa13.55□□□□□ -0.24
SDCBP-201ENST00000260130 PSG11Q9UQ72 335 aa13.55□□□□□ -0.24
SDCBP-201ENST00000260130 SDCBPO00560 298 aaPredicted RBP13.54□□□□□ -0.24
SDCBP-201ENST00000260130 IGHV3-7P01780 117 aa13.54□□□□□ -0.24
SDCBP-201ENST00000260130 HBZP02008 142 aa13.54□□□□□ -0.24
SDCBP-201ENST00000260130 EIF5AP63241 154 aaKnown RBP13.54□□□□□ -0.24
SDCBP-201ENST00000260130 ARL6IP1Q15041 203 aa13.54□□□□□ -0.24
SDCBP-201ENST00000260130 LRRC75BQ2VPJ9 315 aa13.54□□□□□ -0.24
SDCBP-201ENST00000260130 HLA-DRB5Q30154 266 aa13.54□□□□□ -0.24
SDCBP-201ENST00000260130 LHFPL1Q86WI0 220 aa13.54□□□□□ -0.24
SDCBP-201ENST00000260130 OR5R1Q8NH85 324 aa13.54□□□□□ -0.24
SDCBP-201ENST00000260130 RRNAD1Q96FB5 475 aaKnown RBP13.54□□□□□ -0.24
SDCBP-201ENST00000260130 AQP10Q96PS8 301 aa13.54□□□□□ -0.24
SDCBP-201ENST00000260130 HILPDAQ9Y5L2 63 aa13.54□□□□□ -0.24
SDCBP-201ENST00000260130 H0YIZ8 118 aa13.54□□□□□ -0.24
SDCBP-201ENST00000260130 BUB1B-PAK6H3BSN5 160 aa13.54□□□□□ -0.24
SDCBP-201ENST00000260130 J3QR06 171 aa13.54□□□□□ -0.24
SDCBP-201ENST00000260130 KCNAB3O43448 404 aa13.54□□□□□ -0.24
SDCBP-201ENST00000260130 LOXL3P58215 753 aa13.54□□□□□ -0.24
SDCBP-201ENST00000260130 IL34Q6ZMJ4 242 aa13.54□□□□□ -0.24
SDCBP-201ENST00000260130 C2orf50Q96LR7 162 aa13.54□□□□□ -0.24
SDCBP-201ENST00000260130 RTBDNQ9BSG5 229 aaPredicted RBP13.54□□□□□ -0.24
SDCBP-201ENST00000260130 GFOD1Q9NXC2 390 aa13.54□□□□□ -0.24
SDCBP-201ENST00000260130 FAM181BA6NEQ2 426 aa13.53□□□□□ -0.24
SDCBP-201ENST00000260130 H3BUX3 64 aa13.53□□□□□ -0.24
SDCBP-201ENST00000260130 SURF2Q15527 256 aaPredicted RBP13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms