RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 C2orf68Q2NKX9 166 aa11.88□□□□□ -0.51
UPF1-202ENST00000594243 SNX29P2Q8IUI4 249 aa11.88□□□□□ -0.51
UPF1-202ENST00000594243 GPX8Q8TED1 209 aa11.88□□□□□ -0.51
UPF1-202ENST00000594243 GIMAP1Q8WWP7 306 aa11.88□□□□□ -0.51
UPF1-202ENST00000594243 TSNAXQ99598 290 aaKnown RBP11.88□□□□□ -0.51
UPF1-202ENST00000594243 EXTL2Q9UBQ6 330 aa11.88□□□□□ -0.51
UPF1-202ENST00000594243 ZNF107Q9UII5 783 aaPredicted RBP11.88□□□□□ -0.51
UPF1-202ENST00000594243 ANAPC10Q9UM13 185 aa11.88□□□□□ -0.51
UPF1-202ENST00000594243 CCDC160A6NGH7 325 aa11.87□□□□□ -0.51
UPF1-202ENST00000594243 LINC01548A6NM66 108 aa11.87□□□□□ -0.51
UPF1-202ENST00000594243 RRHO14718 337 aa11.87□□□□□ -0.51
UPF1-202ENST00000594243 HLA-DRB1P01911 266 aa11.87□□□□□ -0.51
UPF1-202ENST00000594243 CSF1P09603 554 aa11.87□□□□□ -0.51
UPF1-202ENST00000594243 DUTP33316 252 aaKnown RBP11.87□□□□□ -0.51
UPF1-202ENST00000594243 LGALS7P47929 136 aa11.87□□□□□ -0.51
UPF1-202ENST00000594243 TAS2R46P59540 309 aa11.87□□□□□ -0.51
UPF1-202ENST00000594243 PLGLAQ15195 96 aa11.87□□□□□ -0.51
UPF1-202ENST00000594243 RTL8BQ17RB0 113 aa11.87□□□□□ -0.51
UPF1-202ENST00000594243 NDUFA11Q86Y39 141 aa11.87□□□□□ -0.51
UPF1-202ENST00000594243 STPG2Q8N412 459 aa11.87□□□□□ -0.51
UPF1-202ENST00000594243 RBMX2Q9Y388 322 aaKnown RBP11.87□□□□□ -0.51
UPF1-202ENST00000594243 CTDSP2O14595 271 aa11.86□□□□□ -0.51
UPF1-202ENST00000594243 SPDEFO95238 335 aa11.86□□□□□ -0.51
UPF1-202ENST00000594243 PPYP01298 95 aa11.86□□□□□ -0.51
UPF1-202ENST00000594243 OPN1MWP04001 364 aa11.86□□□□□ -0.51
UPF1-202ENST00000594243 IGKV1-16P04430 117 aa11.86□□□□□ -0.51
UPF1-202ENST00000594243 OPN1MW2P0DN77 364 aa11.86□□□□□ -0.51
UPF1-202ENST00000594243 OPN1MW3P0DN78 364 aa11.86□□□□□ -0.51
UPF1-202ENST00000594243 AADACP22760 399 aa11.86□□□□□ -0.51
UPF1-202ENST00000594243 CD83Q01151 205 aa11.86□□□□□ -0.51
UPF1-202ENST00000594243 MSMO1Q15800 293 aa11.86□□□□□ -0.51
UPF1-202ENST00000594243 DHRS11Q6UWP2 260 aa11.86□□□□□ -0.51
UPF1-202ENST00000594243 TREML4Q6UXN2 200 aa11.86□□□□□ -0.51
UPF1-202ENST00000594243 OVCH2Q7RTZ1 564 aa11.86□□□□□ -0.51
UPF1-202ENST00000594243 COMMD1Q8N668 190 aa11.86□□□□□ -0.51
UPF1-202ENST00000594243 ZBTB34Q8NCN2 500 aa11.86□□□□□ -0.51
UPF1-202ENST00000594243 BVESQ8NE79 360 aa11.86□□□□□ -0.51
UPF1-202ENST00000594243 OR5H2Q8NGV7 314 aa11.86□□□□□ -0.51
UPF1-202ENST00000594243 C5orf30Q96GV9 206 aa11.86□□□□□ -0.51
UPF1-202ENST00000594243 NOL4LQ96MY1 436 aaPredicted RBP11.86□□□□□ -0.51
UPF1-202ENST00000594243 CITED2Q99967 270 aaPredicted RBP11.86□□□□□ -0.51
UPF1-202ENST00000594243 HSPB9Q9BQS6 159 aa11.86□□□□□ -0.51
UPF1-202ENST00000594243 EHFQ9NZC4 300 aa11.86□□□□□ -0.51
UPF1-202ENST00000594243 LINC00527Q9UJ94 153 aa11.86□□□□□ -0.51
UPF1-202ENST00000594243 PRELID3BQ9Y3B1 194 aa11.86□□□□□ -0.51
UPF1-202ENST00000594243 IGKV1D-13A0A0B4J2D9 117 aa11.85□□□□□ -0.51
UPF1-202ENST00000594243 TCRBV4S1A1TA0A5B7 111 aa11.85□□□□□ -0.51
UPF1-202ENST00000594243 IGLV2-14P01704 120 aa11.85□□□□□ -0.51
UPF1-202ENST00000594243 PMP2P02689 132 aa11.85□□□□□ -0.51
UPF1-202ENST00000594243 IGF1P05019 195 aa11.85□□□□□ -0.51
UPF1-202ENST00000594243 IGKV1-13P0DP09 117 aa11.85□□□□□ -0.51
UPF1-202ENST00000594243 VDAC1P21796 283 aa11.85□□□□□ -0.51
UPF1-202ENST00000594243 RCVRNP35243 200 aa11.85□□□□□ -0.51
UPF1-202ENST00000594243 RFX2P48378 723 aa11.85□□□□□ -0.51
UPF1-202ENST00000594243 DYRK1AQ13627 763 aa11.85□□□□□ -0.51
UPF1-202ENST00000594243 PSG5Q15238 335 aa11.85□□□□□ -0.51
UPF1-202ENST00000594243 TMEM177Q53S58 311 aa11.85□□□□□ -0.51
UPF1-202ENST00000594243 ZNF66Q6ZN08 573 aa11.85□□□□□ -0.51
UPF1-202ENST00000594243 LYSMD2Q8IV50 215 aa11.85□□□□□ -0.51
UPF1-202ENST00000594243 OR6F1Q8NGZ6 308 aa11.85□□□□□ -0.51
UPF1-202ENST00000594243 SECTM1Q8WVN6 248 aa11.85□□□□□ -0.51
UPF1-202ENST00000594243 DDB2Q92466 427 aa11.85□□□□□ -0.51
UPF1-202ENST00000594243 BORCS5Q969J3 196 aa11.85□□□□□ -0.51
UPF1-202ENST00000594243 HSD17B10Q99714 261 aaKnown RBP11.85□□□□□ -0.51
UPF1-202ENST00000594243 MIXL1Q9H2W2 232 aa11.85□□□□□ -0.51
UPF1-202ENST00000594243 MMP27Q9H306 513 aa11.85□□□□□ -0.51
UPF1-202ENST00000594243 FBXL15Q9H469 300 aa11.85□□□□□ -0.51
UPF1-202ENST00000594243 RABL2AQ9UBK7 228 aaPredicted RBP11.85□□□□□ -0.51
UPF1-202ENST00000594243 METTL1Q9UBP6 276 aaKnown RBP11.85□□□□□ -0.51
UPF1-202ENST00000594243 RSL24D1Q9UHA3 163 aaKnown RBP11.85□□□□□ -0.51
UPF1-202ENST00000594243 ZNF580Q9UK33 172 aa11.85□□□□□ -0.51
UPF1-202ENST00000594243 RABL2BQ9UNT1 228 aa11.85□□□□□ -0.51
UPF1-202ENST00000594243 TSSC4Q9Y5U2 329 aaPredicted RBP11.85□□□□□ -0.51
UPF1-202ENST00000594243 LINC00473A8K010 186 aa11.84□□□□□ -0.51
UPF1-202ENST00000594243 SHOXO15266 292 aa11.84□□□□□ -0.51
UPF1-202ENST00000594243 HLA-DMAP28067 261 aa11.84□□□□□ -0.51
UPF1-202ENST00000594243 FXYD4P59646 89 aa11.84□□□□□ -0.51
UPF1-202ENST00000594243 HERV-K104P61576 105 aa11.84□□□□□ -0.51
UPF1-202ENST00000594243 NSUN5P1Q3KNT7 163 aa11.84□□□□□ -0.51
UPF1-202ENST00000594243 ZNF660Q6AZW8 331 aaPredicted RBP11.84□□□□□ -0.51
UPF1-202ENST00000594243 HIST2H2BDQ6DRA6 164 aa11.84□□□□□ -0.51
UPF1-202ENST00000594243 TEX38Q6PEX7 206 aa11.84□□□□□ -0.51
UPF1-202ENST00000594243 KCTD9Q7L273 389 aa11.84□□□□□ -0.51
UPF1-202ENST00000594243 ZNF329Q86UD4 541 aa11.84□□□□□ -0.51
UPF1-202ENST00000594243 LAX1Q8IWV1 398 aa11.84□□□□□ -0.51
UPF1-202ENST00000594243 FCAMRQ8WWV6 532 aa11.84□□□□□ -0.51
UPF1-202ENST00000594243 ABHD1Q96SE0 405 aa11.84□□□□□ -0.51
UPF1-202ENST00000594243 SLIRPQ9GZT3 109 aaKnown RBP11.84□□□□□ -0.51
UPF1-202ENST00000594243 C6orf62Q9GZU0 229 aaPredicted RBP11.84□□□□□ -0.51
UPF1-202ENST00000594243 SLC5A7Q9GZV3 580 aa11.84□□□□□ -0.51
UPF1-202ENST00000594243 OR51J1Q9H342 316 aa11.84□□□□□ -0.51
UPF1-202ENST00000594243 CCL28Q9NRJ3 127 aa11.84□□□□□ -0.51
UPF1-202ENST00000594243 IGHV7-81A0A0B4J1V7 117 aa11.83□□□□□ -0.52
UPF1-202ENST00000594243 ZNF701M0R085 212 aaPredicted RBP11.83□□□□□ -0.52
UPF1-202ENST00000594243 HRH1P35367 487 aa11.83□□□□□ -0.52
UPF1-202ENST00000594243 TSPAN5P62079 268 aa11.83□□□□□ -0.52
UPF1-202ENST00000594243 MRPS10P82664 201 aaKnown RBP11.83□□□□□ -0.52
UPF1-202ENST00000594243 TCTEX1D4Q5JR98 221 aa11.83□□□□□ -0.52
UPF1-202ENST00000594243 C10orf99Q6UWK7 81 aa11.83□□□□□ -0.52
UPF1-202ENST00000594243 ZNF562Q6V9R5 426 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 185.1 ms