RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 CARHSP1Q9Y2V2 147 aaKnown RBP9.86□□□□□ -0.83
NPHP4-204ENST00000460696 S1PR2O95136 353 aa9.86□□□□□ -0.83
NPHP4-204ENST00000460696 CLDN14O95500 239 aa9.86□□□□□ -0.83
NPHP4-204ENST00000460696 SRSF4Q08170 494 aaKnown RBP9.86□□□□□ -0.83
NPHP4-204ENST00000460696 OR10D4PQ8NGN7 298 aa9.86□□□□□ -0.83
NPHP4-204ENST00000460696 GINS3Q9BRX5 216 aa9.86□□□□□ -0.83
NPHP4-204ENST00000460696 TOLLIPQ9H0E2 274 aa9.86□□□□□ -0.83
NPHP4-204ENST00000460696 AUP1Q9Y679 476 aa9.86□□□□□ -0.83
NPHP4-204ENST00000460696 TMEM42Q69YG0 159 aa9.86□□□□□ -0.83
NPHP4-204ENST00000460696 ZNF880Q6PDB4 577 aa9.86□□□□□ -0.83
NPHP4-204ENST00000460696 SPRR3Q9UBC9 169 aa9.86□□□□□ -0.83
NPHP4-204ENST00000460696 VAX2Q9UIW0 290 aa9.86□□□□□ -0.83
NPHP4-204ENST00000460696 EML6Q6ZMW3 1958 aa9.86□□□□□ -0.83
NPHP4-204ENST00000460696 SETD2Q9BYW2 2564 aaPredicted RBP9.86□□□□□ -0.83
NPHP4-204ENST00000460696 VPS13AQ96RL7 3174 aa9.86□□□□□ -0.83
NPHP4-204ENST00000460696 C12orf77C9JDV5 145 aa9.85□□□□□ -0.83
NPHP4-204ENST00000460696 PAGE4O60829 102 aa9.85□□□□□ -0.83
NPHP4-204ENST00000460696 TNFRSF1AP19438 455 aa9.85□□□□□ -0.83
NPHP4-204ENST00000460696 RNF212Q495C1 297 aa9.85□□□□□ -0.83
NPHP4-204ENST00000460696 KHDC3LQ587J8 217 aa9.85□□□□□ -0.83
NPHP4-204ENST00000460696 SAMD10Q9BYL1 202 aa9.85□□□□□ -0.83
NPHP4-204ENST00000460696 RBKSQ9H477 322 aa9.85□□□□□ -0.83
NPHP4-204ENST00000460696 ZNF320A2RRD8 509 aa9.85□□□□□ -0.83
NPHP4-204ENST00000460696 AP4M1O00189 453 aa9.85□□□□□ -0.83
NPHP4-204ENST00000460696 ZG16O60844 167 aa9.85□□□□□ -0.83
NPHP4-204ENST00000460696 CECR9P0C854 216 aa9.85□□□□□ -0.83
NPHP4-204ENST00000460696 MMP9P14780 707 aa9.85□□□□□ -0.83
NPHP4-204ENST00000460696 BSXQ3C1V8 233 aa9.85□□□□□ -0.83
NPHP4-204ENST00000460696 DHRS7BQ6IAN0 325 aaPredicted RBP9.85□□□□□ -0.83
NPHP4-204ENST00000460696 ZNF66Q6ZN08 573 aa9.85□□□□□ -0.83
NPHP4-204ENST00000460696 ITLN1Q8WWA0 313 aa9.85□□□□□ -0.83
NPHP4-204ENST00000460696 HSD17B10Q99714 261 aaKnown RBP9.85□□□□□ -0.83
NPHP4-204ENST00000460696 SSUH2Q9Y2M2 353 aa9.85□□□□□ -0.83
NPHP4-204ENST00000460696 TMEM131Q92545 1883 aa9.85□□□□□ -0.83
NPHP4-204ENST00000460696 ATP6V1FQ16864 119 aa9.85□□□□□ -0.83
NPHP4-204ENST00000460696 TMEM108Q6UXF1 575 aa9.85□□□□□ -0.83
NPHP4-204ENST00000460696 ZBTB34Q8NCN2 500 aa9.85□□□□□ -0.83
NPHP4-204ENST00000460696 ZNRF1Q8ND25 227 aa9.85□□□□□ -0.83
NPHP4-204ENST00000460696 TSTD3H0UI37 97 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 IL18BPO95998 194 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 OR5G3P0C626 314 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 FAM157CP0CG43 387 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 BCL2P10415 239 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 FABP4P15090 132 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 TRAT1Q6PIZ9 186 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 MRGPRGQ86SM5 289 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 H1FOOQ8IZA3 346 aaPredicted RBP9.84□□□□□ -0.83
NPHP4-204ENST00000460696 TAF15Q92804 592 aaKnown RBP eCLIP9.84□□□□□ -0.83
NPHP4-204ENST00000460696 SLC35E1Q96K37 410 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 ADAMTS9Q9P2N4 1935 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 SCGB1D1O95968 90 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 HRASP01112 189 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 ADH4P08319 380 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 RPS2P15880 293 aaKnown RBP9.84□□□□□ -0.83
NPHP4-204ENST00000460696 DEFA6Q01524 100 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 ZNF90Q03938 601 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 P2RY6Q15077 328 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 LYPD6Q86Y78 171 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 VKORC1L1Q8N0U8 176 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 ZNF645Q8N7E2 425 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 RND1Q92730 232 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 HIST1H2BAQ96A08 127 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 TMEM56Q96MV1 263 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 TMEM56-RWDD3S4R434 201 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 F6UZH7 168 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 GNB1P62873 340 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 TNFRSF9Q07011 255 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 FAM201AQ5SY85 155 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 STUMQ69YW2 141 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 OR4S2Q8NH73 311 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 POM121Q96HA1 1249 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 TMEM204Q9BSN7 226 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 TRANK1O15050 2925 aa9.84□□□□□ -0.83
NPHP4-204ENST00000460696 ODAMA1E959 279 aa9.83□□□□□ -0.84
NPHP4-204ENST00000460696 CEACAM18A8MTB9 384 aa9.83□□□□□ -0.84
NPHP4-204ENST00000460696 AHRRA9YTQ3 701 aa9.83□□□□□ -0.84
NPHP4-204ENST00000460696 YIF1AO95070 293 aa9.83□□□□□ -0.84
NPHP4-204ENST00000460696 CCL20P78556 96 aa9.83□□□□□ -0.84
NPHP4-204ENST00000460696 ERHP84090 104 aaKnown RBP9.83□□□□□ -0.84
NPHP4-204ENST00000460696 SERF2P84101 59 aa9.83□□□□□ -0.84
NPHP4-204ENST00000460696 C9orf106Q8NAJ2 232 aa9.83□□□□□ -0.84
NPHP4-204ENST00000460696 IL22RA2Q969J5 263 aa9.83□□□□□ -0.84
NPHP4-204ENST00000460696 NEIL1Q96FI4 390 aaPredicted RBP9.83□□□□□ -0.84
NPHP4-204ENST00000460696 TMEM68Q96MH6 324 aa9.83□□□□□ -0.84
NPHP4-204ENST00000460696 CCL13Q99616 98 aa9.83□□□□□ -0.84
NPHP4-204ENST00000460696 RNF7Q9UBF6 113 aa9.83□□□□□ -0.84
NPHP4-204ENST00000460696 C11orf94C9JXX5 98 aa9.83□□□□□ -0.84
NPHP4-204ENST00000460696 MGST3O14880 152 aa9.83□□□□□ -0.84
NPHP4-204ENST00000460696 SPSB4Q96A44 273 aa9.83□□□□□ -0.84
NPHP4-204ENST00000460696 GALR1P47211 349 aa9.83□□□□□ -0.84
NPHP4-204ENST00000460696 RAB7AP51149 207 aa9.83□□□□□ -0.84
NPHP4-204ENST00000460696 ZNF343Q6P1L6 599 aa9.83□□□□□ -0.84
NPHP4-204ENST00000460696 RHOVQ96L33 236 aa9.83□□□□□ -0.84
NPHP4-204ENST00000460696 SLC35D1Q9NTN3 355 aa9.83□□□□□ -0.84
NPHP4-204ENST00000460696 DVL1O14640 695 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 DKK1O94907 266 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 SFTPCP11686 197 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 PNRC1Q12796 327 aaPredicted RBP9.82□□□□□ -0.84
NPHP4-204ENST00000460696 KLRB1Q12918 225 aa9.82□□□□□ -0.84
NPHP4-204ENST00000460696 SLC35E3Q7Z769 313 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 158.4 ms