RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 LSM10Q969L4 123 aaKnown RBP12.98□□□□□ -0.33
CCDC40-202ENST00000374876 PBDC1Q9BVG4 233 aa12.98□□□□□ -0.33
CCDC40-202ENST00000374876 NGBQ9NPG2 151 aa12.98□□□□□ -0.33
CCDC40-202ENST00000374876 ROS1P08922 2347 aa12.98□□□□□ -0.33
CCDC40-202ENST00000374876 CYSRT1A8MQ03 144 aa12.98□□□□□ -0.33
CCDC40-202ENST00000374876 H2AFB1P0C5Y9 115 aa12.98□□□□□ -0.33
CCDC40-202ENST00000374876 CTRB1P17538 263 aa12.98□□□□□ -0.33
CCDC40-202ENST00000374876 KITLGP21583 273 aa12.98□□□□□ -0.33
CCDC40-202ENST00000374876 NFYBP25208 207 aa12.98□□□□□ -0.33
CCDC40-202ENST00000374876 PAX9P55771 341 aa12.98□□□□□ -0.33
CCDC40-202ENST00000374876 IZUMO4Q1ZYL8 232 aa12.98□□□□□ -0.33
CCDC40-202ENST00000374876 ZNF718Q3SXZ3 478 aa12.98□□□□□ -0.33
CCDC40-202ENST00000374876 CTRB2Q6GPI1 263 aa12.98□□□□□ -0.33
CCDC40-202ENST00000374876 ODF3L1Q8IXM7 274 aa12.98□□□□□ -0.33
CCDC40-202ENST00000374876 C11orf53Q8IXP5 236 aa12.98□□□□□ -0.33
CCDC40-202ENST00000374876 LFNGQ8NES3 379 aa12.98□□□□□ -0.33
CCDC40-202ENST00000374876 NRGNQ92686 78 aa12.98□□□□□ -0.33
CCDC40-202ENST00000374876 GALMQ96C23 342 aa12.98□□□□□ -0.33
CCDC40-202ENST00000374876 GNPNAT1Q96EK6 184 aaPredicted RBP12.98□□□□□ -0.33
CCDC40-202ENST00000374876 RAB40CQ96S21 281 aa12.98□□□□□ -0.33
CCDC40-202ENST00000374876 HEATR1Q9H583 2144 aaKnown RBP12.98□□□□□ -0.33
CCDC40-202ENST00000374876 ESRP2Q9H6T0 727 aaKnown RBP12.98□□□□□ -0.33
CCDC40-202ENST00000374876 CACNG5Q9UF02 275 aa12.98□□□□□ -0.33
CCDC40-202ENST00000374876 HRNRQ86YZ3 2850 aaPredicted RBP12.98□□□□□ -0.33
CCDC40-202ENST00000374876 ABCA12Q86UK0 2595 aa12.98□□□□□ -0.33
CCDC40-202ENST00000374876 CSMD2Q7Z408 3487 aa12.97□□□□□ -0.33
CCDC40-202ENST00000374876 A0A1B0GV50 99 aa12.97□□□□□ -0.33
CCDC40-202ENST00000374876 RNF212BA8MTL3 300 aa12.97□□□□□ -0.33
CCDC40-202ENST00000374876 IGKV1-39P01597 117 aa12.97□□□□□ -0.33
CCDC40-202ENST00000374876 IGKV1D-39P04432 117 aa12.97□□□□□ -0.33
CCDC40-202ENST00000374876 LMO1P25800 156 aa12.97□□□□□ -0.33
CCDC40-202ENST00000374876 CD200P41217 278 aa12.97□□□□□ -0.33
CCDC40-202ENST00000374876 PRAMEF6Q5VXH4 476 aa12.97□□□□□ -0.33
CCDC40-202ENST00000374876 DRAM1Q8N682 238 aa12.97□□□□□ -0.33
CCDC40-202ENST00000374876 ATP5SQ99766 215 aa12.97□□□□□ -0.33
CCDC40-202ENST00000374876 UFSP2Q9NUQ7 469 aa12.97□□□□□ -0.33
CCDC40-202ENST00000374876 IGHV1-18A0A0C4DH31 117 aa12.96□□□□□ -0.33
CCDC40-202ENST00000374876 H3BP45 60 aa12.96□□□□□ -0.33
CCDC40-202ENST00000374876 IGLV1-44P01699 117 aa12.96□□□□□ -0.33
CCDC40-202ENST00000374876 CD40P25942 277 aa12.96□□□□□ -0.33
CCDC40-202ENST00000374876 IL2RGP31785 369 aa12.96□□□□□ -0.33
CCDC40-202ENST00000374876 HFEQ30201 348 aa12.96□□□□□ -0.33
CCDC40-202ENST00000374876 SLC35E4Q6ICL7 350 aa12.96□□□□□ -0.33
CCDC40-202ENST00000374876 ACP7Q6ZNF0 438 aa12.96□□□□□ -0.33
CCDC40-202ENST00000374876 Q6ZRM9 215 aa12.96□□□□□ -0.33
CCDC40-202ENST00000374876 NEUROG1Q92886 237 aa12.96□□□□□ -0.33
CCDC40-202ENST00000374876 MSL2Q9HCI7 577 aa12.96□□□□□ -0.33
CCDC40-202ENST00000374876 RFNGQ9Y644 331 aa12.96□□□□□ -0.33
CCDC40-202ENST00000374876 AKAP6Q13023 2319 aa12.96□□□□□ -0.33
CCDC40-202ENST00000374876 IGHV2OR16-5A0A0B4J2B6 119 aa12.96□□□□□ -0.34
CCDC40-202ENST00000374876 OOEPA6NGQ2 149 aa12.96□□□□□ -0.34
CCDC40-202ENST00000374876 CD3EP07766 207 aa12.96□□□□□ -0.34
CCDC40-202ENST00000374876 PPP1CCP36873 323 aaKnown RBP12.96□□□□□ -0.34
CCDC40-202ENST00000374876 OR3A1P47881 315 aa12.96□□□□□ -0.34
CCDC40-202ENST00000374876 SULT1A1P50225 295 aa12.96□□□□□ -0.34
CCDC40-202ENST00000374876 AESQ08117 197 aa12.96□□□□□ -0.34
CCDC40-202ENST00000374876 ADAM5Q6NVV9 412 aa12.96□□□□□ -0.34
CCDC40-202ENST00000374876 TMEM108Q6UXF1 575 aa12.96□□□□□ -0.34
CCDC40-202ENST00000374876 WDR82Q6UXN9 313 aa12.96□□□□□ -0.34
CCDC40-202ENST00000374876 Q6ZR03 302 aa12.96□□□□□ -0.34
CCDC40-202ENST00000374876 SSX8Q7RTT4 187 aa12.96□□□□□ -0.34
CCDC40-202ENST00000374876 OR1L1Q8NH94 360 aa12.96□□□□□ -0.34
CCDC40-202ENST00000374876 SCRT1Q9BWW7 348 aa12.96□□□□□ -0.34
CCDC40-202ENST00000374876 WSB1Q9Y6I7 421 aa12.96□□□□□ -0.34
CCDC40-202ENST00000374876 TACC2O95359 2948 aa12.96□□□□□ -0.34
CCDC40-202ENST00000374876 ITPR2Q14571 2701 aa12.96□□□□□ -0.34
CCDC40-202ENST00000374876 LRBAP50851 2863 aa12.95□□□□□ -0.34
CCDC40-202ENST00000374876 CSMD1Q96PZ7 3565 aa12.95□□□□□ -0.34
CCDC40-202ENST00000374876 KIAA1324LA8MWY0 1029 aaPredicted RBP12.95□□□□□ -0.34
CCDC40-202ENST00000374876 C12orf77C9JDV5 145 aa12.95□□□□□ -0.34
CCDC40-202ENST00000374876 TXNL1O43396 289 aa12.95□□□□□ -0.34
CCDC40-202ENST00000374876 DFFBO76075 338 aa12.95□□□□□ -0.34
CCDC40-202ENST00000374876 IGKV1-5P01602 117 aa12.95□□□□□ -0.34
CCDC40-202ENST00000374876 GABRA2P47869 451 aa12.95□□□□□ -0.34
CCDC40-202ENST00000374876 FLI1Q01543 452 aaPredicted RBP12.95□□□□□ -0.34
CCDC40-202ENST00000374876 ZNF585BQ52M93 769 aa12.95□□□□□ -0.34
CCDC40-202ENST00000374876 AKIRIN2Q53H80 203 aa12.95□□□□□ -0.34
CCDC40-202ENST00000374876 OR10Z1Q8NGY1 313 aa12.95□□□□□ -0.34
CCDC40-202ENST00000374876 MLXQ9UH92 298 aa12.95□□□□□ -0.34
CCDC40-202ENST00000374876 APCP25054 2843 aa12.95□□□□□ -0.34
CCDC40-202ENST00000374876 SYNGR2O43760 224 aa12.95□□□□□ -0.34
CCDC40-202ENST00000374876 PTAFRP25105 342 aa12.95□□□□□ -0.34
CCDC40-202ENST00000374876 HOXA4Q00056 320 aaPredicted RBP12.95□□□□□ -0.34
CCDC40-202ENST00000374876 TMEM267Q0VDI3 215 aaPredicted RBP12.95□□□□□ -0.34
CCDC40-202ENST00000374876 SMIM21Q3B7S5 101 aa12.95□□□□□ -0.34
CCDC40-202ENST00000374876 MBNL2Q5VZF2 373 aaKnown RBP12.95□□□□□ -0.34
CCDC40-202ENST00000374876 SLC25A24Q6NUK1 477 aa12.95□□□□□ -0.34
CCDC40-202ENST00000374876 C1orf174Q8IYL3 243 aa12.95□□□□□ -0.34
CCDC40-202ENST00000374876 ZNF645Q8N7E2 425 aa12.95□□□□□ -0.34
CCDC40-202ENST00000374876 NINJ1Q92982 152 aa12.95□□□□□ -0.34
CCDC40-202ENST00000374876 AIFM2Q9BRQ8 373 aa12.95□□□□□ -0.34
CCDC40-202ENST00000374876 FBXO7Q9Y3I1 522 aa12.95□□□□□ -0.34
CCDC40-202ENST00000374876 SPG11Q96JI7 2443 aa12.94□□□□□ -0.34
CCDC40-202ENST00000374876 GPR37O15354 613 aa12.94□□□□□ -0.34
CCDC40-202ENST00000374876 TSPAN9O75954 239 aa12.94□□□□□ -0.34
CCDC40-202ENST00000374876 PTBP3O95758 552 aaKnown RBP12.94□□□□□ -0.34
CCDC40-202ENST00000374876 IFNA5P01569 189 aa12.94□□□□□ -0.34
CCDC40-202ENST00000374876 HBZP02008 142 aa12.94□□□□□ -0.34
CCDC40-202ENST00000374876 RUNX1Q01196 453 aa12.94□□□□□ -0.34
CCDC40-202ENST00000374876 MZT1Q08AG7 82 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms