RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 TLX3O43711 291 aaPredicted RBP8.75□□□□□ -1.01
VPS39-214ENST00000614932 TTRP02766 147 aa8.75□□□□□ -1.01
VPS39-214ENST00000614932 CLPSP04118 112 aa8.75□□□□□ -1.01
VPS39-214ENST00000614932 WNT2P09544 360 aa8.75□□□□□ -1.01
VPS39-214ENST00000614932 VSIG8P0DPA2 414 aa8.75□□□□□ -1.01
VPS39-214ENST00000614932 ECI1P42126 302 aa8.75□□□□□ -1.01
VPS39-214ENST00000614932 GUCA1AP43080 201 aaPredicted RBP8.75□□□□□ -1.01
VPS39-214ENST00000614932 MRPS34P82930 218 aaKnown RBP8.75□□□□□ -1.01
VPS39-214ENST00000614932 QRFPP83859 136 aa8.75□□□□□ -1.01
VPS39-214ENST00000614932 POU3F1Q03052 451 aaPredicted RBP8.75□□□□□ -1.01
VPS39-214ENST00000614932 PPP1R14AQ96A00 147 aa8.75□□□□□ -1.01
VPS39-214ENST00000614932 TM2D1Q9BX74 207 aa8.75□□□□□ -1.01
VPS39-214ENST00000614932 GEMIN7Q9H840 131 aaKnown RBP8.75□□□□□ -1.01
VPS39-214ENST00000614932 THYN1Q9P016 225 aa8.75□□□□□ -1.01
VPS39-214ENST00000614932 TRAV9-2A0A087WT02 112 aa8.75□□□□□ -1.01
VPS39-214ENST00000614932 TMEM250H0YL14 139 aa8.75□□□□□ -1.01
VPS39-214ENST00000614932 SOX1O00570 391 aaPredicted RBP8.75□□□□□ -1.01
VPS39-214ENST00000614932 NUDT3O95989 172 aa8.75□□□□□ -1.01
VPS39-214ENST00000614932 C3orf79P0CE67 100 aa8.75□□□□□ -1.01
VPS39-214ENST00000614932 STAG3L2P0CL84 134 aa8.75□□□□□ -1.01
VPS39-214ENST00000614932 OPRM1P35372 400 aa8.75□□□□□ -1.01
VPS39-214ENST00000614932 NXPH1P58417 271 aa8.75□□□□□ -1.01
VPS39-214ENST00000614932 TMEM177Q53S58 311 aa8.75□□□□□ -1.01
VPS39-214ENST00000614932 LYZL2Q7Z4W2 148 aa8.75□□□□□ -1.01
VPS39-214ENST00000614932 MARCH3Q86UD3 253 aa8.75□□□□□ -1.01
VPS39-214ENST00000614932 ATOH7Q8N100 152 aa8.75□□□□□ -1.01
VPS39-214ENST00000614932 ASCC3Q8N3C0 2202 aaKnown RBP8.75□□□□□ -1.01
VPS39-214ENST00000614932 OR10P1Q8NGE3 313 aa8.75□□□□□ -1.01
VPS39-214ENST00000614932 MRAP2Q96G30 205 aa8.75□□□□□ -1.01
VPS39-214ENST00000614932 ELOVL3Q9HB03 270 aa8.75□□□□□ -1.01
VPS39-214ENST00000614932 NPVFQ9HCQ7 196 aa8.75□□□□□ -1.01
VPS39-214ENST00000614932 SRA1Q9HD15 236 aaKnown RBP8.75□□□□□ -1.01
VPS39-214ENST00000614932 IGHV1OR21-1A0A087WYE8 117 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 MUC21A0A0G2JKD1 596 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 MUC21A0A140T8X8 626 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 C17orf112F2Z3M2 114 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 VENTXO95231 258 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 NRASP01111 189 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 KRASP01116 189 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 C1QTNF9P0C862 333 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 AMTP48728 403 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 DYNLT3P51808 116 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 PLP1P60201 277 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 HERV-K104P63124 156 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 MEF2BQ02080 365 aaPredicted RBP8.74□□□□□ -1.01
VPS39-214ENST00000614932 FUT7Q11130 342 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 MUC21Q5SSG8 566 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 SLC18B1Q6NT16 456 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 C12orf54Q6X4T0 127 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 OR5A2Q8NGI9 324 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 OR2AE1Q8NHA4 323 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 SLC25A40Q8TBP6 338 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 CHRDL1Q9BU40 450 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 RARRES3Q9UL19 164 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 C11orf98E9PRG8 122 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 F2Z2F3 143 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 ZNF737O75373 536 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 UTS2O95399 124 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 REG1AP05451 166 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 HSD52Q0P140 79 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 RNFT1Q5M7Z0 435 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 TMEM252Q8N6L7 170 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 OR2M3Q8NG83 312 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 FER1L6-AS2Q96M78 137 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 FAM110AQ9BQ89 295 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 ST6GALNAC5Q9BVH7 336 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 C11orf1Q9H5F2 150 aa8.74□□□□□ -1.01
VPS39-214ENST00000614932 IGKV1D-42A0A075B6H8 117 aa8.73□□□□□ -1.01
VPS39-214ENST00000614932 TNFSF12O43508 249 aa8.73□□□□□ -1.01
VPS39-214ENST00000614932 HIST1H1DP16402 221 aaKnown RBP8.73□□□□□ -1.01
VPS39-214ENST00000614932 MLF1P58340 268 aa8.73□□□□□ -1.01
VPS39-214ENST00000614932 TMEM187Q14656 261 aa8.73□□□□□ -1.01
VPS39-214ENST00000614932 ZNF141Q15928 474 aa8.73□□□□□ -1.01
VPS39-214ENST00000614932 KIAA2026Q5HYC2 2103 aa8.73□□□□□ -1.01
VPS39-214ENST00000614932 C1orf140Q5VVS0 124 aa8.73□□□□□ -1.01
VPS39-214ENST00000614932 CCDC144NLQ6NUI1 221 aa8.73□□□□□ -1.01
VPS39-214ENST00000614932 OR10V1Q8NGI7 309 aa8.73□□□□□ -1.01
VPS39-214ENST00000614932 AMELYQ99218 206 aa8.73□□□□□ -1.01
VPS39-214ENST00000614932 RPRMQ9NS64 109 aa8.73□□□□□ -1.01
VPS39-214ENST00000614932 HIF1ANQ9NWT6 349 aa8.73□□□□□ -1.01
VPS39-214ENST00000614932 POLR1DQ9Y2S0 133 aa8.73□□□□□ -1.01
VPS39-214ENST00000614932 CNTRLQ7Z7A1 2325 aa8.73□□□□□ -1.01
VPS39-214ENST00000614932 TMEM131Q92545 1883 aa8.73□□□□□ -1.01
VPS39-214ENST00000614932 LILRA5A6NI73 299 aa8.73□□□□□ -1.01
VPS39-214ENST00000614932 OR11H12B2RN74 326 aa8.73□□□□□ -1.01
VPS39-214ENST00000614932 S1PR2O95136 353 aa8.73□□□□□ -1.01
VPS39-214ENST00000614932 SNU13P55769 128 aaKnown RBP8.73□□□□□ -1.01
VPS39-214ENST00000614932 FMODQ06828 376 aa8.73□□□□□ -1.01
VPS39-214ENST00000614932 ZP4Q12836 540 aa8.73□□□□□ -1.01
VPS39-214ENST00000614932 ARFRP1Q13795 201 aa8.73□□□□□ -1.01
VPS39-214ENST00000614932 FAM58AQ8N1B3 248 aa8.73□□□□□ -1.01
VPS39-214ENST00000614932 OR11H1Q8NG94 326 aa8.73□□□□□ -1.01
VPS39-214ENST00000614932 OR11H2Q8NH07 326 aa8.73□□□□□ -1.01
VPS39-214ENST00000614932 PLPPR1Q8TBJ4 325 aa8.73□□□□□ -1.01
VPS39-214ENST00000614932 PCNX3Q9H6A9 2034 aa8.73□□□□□ -1.01
VPS39-214ENST00000614932 H0Y8G0 127 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 RELBQ01201 579 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 MEP1BQ16820 701 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 TMEM249Q2WGJ8 235 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 KIAA1644Q3SXP7 199 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms