RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 CT45A3Q8NHU0 189 aa17.27■□□□□ 0.36
VPS28-208ENST00000527797 ASB13Q8WXK3 278 aa17.27■□□□□ 0.36
VPS28-208ENST00000527797 MSI2Q96DH6 328 aaKnown RBP17.27■□□□□ 0.36
VPS28-208ENST00000527797 PIMREGQ9BSJ6 248 aa17.27■□□□□ 0.36
VPS28-208ENST00000527797 TMEM222Q9H0R3 208 aa17.27■□□□□ 0.36
VPS28-208ENST00000527797 METTL8Q9H825 291 aaKnown RBP17.27■□□□□ 0.36
VPS28-208ENST00000527797 LOC105371242A0A075B767 164 aa17.26■□□□□ 0.35
VPS28-208ENST00000527797 H0Y980 276 aa17.26■□□□□ 0.35
VPS28-208ENST00000527797 IGHV2-5P01817 119 aa17.26■□□□□ 0.35
VPS28-208ENST00000527797 RAP2BP61225 183 aa17.26■□□□□ 0.35
VPS28-208ENST00000527797 Q3ZCU0 254 aa17.26■□□□□ 0.35
VPS28-208ENST00000527797 CLEC2AQ6UVW9 174 aa17.26■□□□□ 0.35
VPS28-208ENST00000527797 LRTM2Q8N967 370 aa17.26■□□□□ 0.35
VPS28-208ENST00000527797 PERPQ96FX8 193 aa17.26■□□□□ 0.35
VPS28-208ENST00000527797 GSX2Q9BZM3 304 aa17.26■□□□□ 0.35
VPS28-208ENST00000527797 IFI27L2Q9H2X8 130 aa17.26■□□□□ 0.35
VPS28-208ENST00000527797 SDHAF2Q9NX18 166 aa17.26■□□□□ 0.35
VPS28-208ENST00000527797 PIPOXQ9P0Z9 390 aa17.26■□□□□ 0.35
VPS28-208ENST00000527797 LRBAP50851 2863 aa17.26■□□□□ 0.35
VPS28-208ENST00000527797 FAM25EA8MYX2 175 aa17.25■□□□□ 0.35
VPS28-208ENST00000527797 SLC31A2O15432 143 aa17.25■□□□□ 0.35
VPS28-208ENST00000527797 LIPFP07098 398 aa17.25■□□□□ 0.35
VPS28-208ENST00000527797 EIF2B2P49770 351 aaKnown RBP17.25■□□□□ 0.35
VPS28-208ENST00000527797 GNG10P50151 68 aa17.25■□□□□ 0.35
VPS28-208ENST00000527797 GSG1LQ6UXU4 331 aa17.25■□□□□ 0.35
VPS28-208ENST00000527797 C10orf105Q8TEF2 133 aa17.25■□□□□ 0.35
VPS28-208ENST00000527797 MARVELD3Q96A59 401 aa17.25■□□□□ 0.35
VPS28-208ENST00000527797 C5orf30Q96GV9 206 aa17.25■□□□□ 0.35
VPS28-208ENST00000527797 PDCD10Q9BUL8 212 aa17.25■□□□□ 0.35
VPS28-208ENST00000527797 GAB2Q9UQC2 676 aa17.25■□□□□ 0.35
VPS28-208ENST00000527797 COL12A1Q99715 3063 aa17.25■□□□□ 0.35
VPS28-208ENST00000527797 LRRK2Q5S007 2527 aa17.25■□□□□ 0.35
VPS28-208ENST00000527797 C13orf42A0A1B0GVH6 325 aa17.25■□□□□ 0.35
VPS28-208ENST00000527797 A0A1W2PPE3 182 aa17.25■□□□□ 0.35
VPS28-208ENST00000527797 C5orf51A6NDU8 294 aa17.25■□□□□ 0.35
VPS28-208ENST00000527797 C22orf46C9J442 243 aa17.25■□□□□ 0.35
VPS28-208ENST00000527797 ADAP1O75689 374 aa17.25■□□□□ 0.35
VPS28-208ENST00000527797 HOXB5P09067 269 aa17.25■□□□□ 0.35
VPS28-208ENST00000527797 IGHV1-8P0DP01 117 aa17.25■□□□□ 0.35
VPS28-208ENST00000527797 ZNF16P17020 682 aaPredicted RBP17.25■□□□□ 0.35
VPS28-208ENST00000527797 UCP1P25874 307 aa17.25■□□□□ 0.35
VPS28-208ENST00000527797 CATR1Q13166 79 aa17.25■□□□□ 0.35
VPS28-208ENST00000527797 C11orf42Q8N5U0 333 aa17.25■□□□□ 0.35
VPS28-208ENST00000527797 CLDND2Q8NHS1 167 aa17.25■□□□□ 0.35
VPS28-208ENST00000527797 LIN7CQ9NUP9 197 aaKnown RBP17.25■□□□□ 0.35
VPS28-208ENST00000527797 SESN1Q9Y6P5 492 aa17.25■□□□□ 0.35
VPS28-208ENST00000527797 hCG_1809904A0A1W2PP81 198 aa17.24■□□□□ 0.35
VPS28-208ENST00000527797 A0A1W2PPE2 198 aa17.24■□□□□ 0.35
VPS28-208ENST00000527797 A0A1W2PR64 198 aa17.24■□□□□ 0.35
VPS28-208ENST00000527797 A0A1W2PRV1 198 aa17.24■□□□□ 0.35
VPS28-208ENST00000527797 SMLR1H3BR10 107 aa17.24■□□□□ 0.35
VPS28-208ENST00000527797 IFNA21P01568 189 aa17.24■□□□□ 0.35
VPS28-208ENST00000527797 C1QBP02746 253 aa17.24■□□□□ 0.35
VPS28-208ENST00000527797 RBP4P02753 201 aa17.24■□□□□ 0.35
VPS28-208ENST00000527797 EIF4EBP1Q13541 118 aaPredicted RBP17.24■□□□□ 0.35
VPS28-208ENST00000527797 BTNL3Q6UXE8 466 aa17.24■□□□□ 0.35
VPS28-208ENST00000527797 ZNF66Q6ZN08 573 aa17.24■□□□□ 0.35
VPS28-208ENST00000527797 SLC25A48Q6ZT89 311 aaKnown RBP17.24■□□□□ 0.35
VPS28-208ENST00000527797 ZNF695Q8IW36 515 aa17.24■□□□□ 0.35
VPS28-208ENST00000527797 OR2T35Q8NGX2 323 aa17.24■□□□□ 0.35
VPS28-208ENST00000527797 C18orf12Q96KH6 178 aa17.24■□□□□ 0.35
VPS28-208ENST00000527797 TMEM56Q96MV1 263 aa17.24■□□□□ 0.35
VPS28-208ENST00000527797 HSD17B10Q99714 261 aaKnown RBP17.24■□□□□ 0.35
VPS28-208ENST00000527797 TMEM56-RWDD3S4R434 201 aa17.24■□□□□ 0.35
VPS28-208ENST00000527797 DSCAML1Q8TD84 2053 aa17.24■□□□□ 0.35
VPS28-208ENST00000527797 RAB29O14966 203 aa17.23■□□□□ 0.35
VPS28-208ENST00000527797 SERPINE2P07093 398 aa17.23■□□□□ 0.35
VPS28-208ENST00000527797 DSCR9P59020 149 aa17.23■□□□□ 0.35
VPS28-208ENST00000527797 LMO4P61968 165 aa17.23■□□□□ 0.35
VPS28-208ENST00000527797 SRSF4Q08170 494 aaKnown RBP17.23■□□□□ 0.35
VPS28-208ENST00000527797 ZNF436-AS1Q8NC38 126 aaPredicted RBP17.23■□□□□ 0.35
VPS28-208ENST00000527797 SEC22AQ96IW7 307 aa17.23■□□□□ 0.35
VPS28-208ENST00000527797 A0A087X0M5 115 aa17.22■□□□□ 0.35
VPS28-208ENST00000527797 A0A1B0GX30 115 aa17.22■□□□□ 0.35
VPS28-208ENST00000527797 CDS2O95674 445 aa17.22■□□□□ 0.35
VPS28-208ENST00000527797 KRTAP10-9P60411 292 aa17.22■□□□□ 0.35
VPS28-208ENST00000527797 TMEM268Q5VZI3 342 aa17.22■□□□□ 0.35
VPS28-208ENST00000527797 LYG1Q8N1E2 194 aa17.22■□□□□ 0.35
VPS28-208ENST00000527797 LHFPL5Q8TAF8 219 aa17.22■□□□□ 0.35
VPS28-208ENST00000527797 WDR89Q96FK6 387 aaPredicted RBP17.22■□□□□ 0.35
VPS28-208ENST00000527797 RANBP3Q9H6Z4 567 aaPredicted RBP17.22■□□□□ 0.35
VPS28-208ENST00000527797 ONECUT1Q9UBC0 465 aa17.22■□□□□ 0.35
VPS28-208ENST00000527797 PIGBOS1A0A0B4J2F0 54 aa17.21■□□□□ 0.35
VPS28-208ENST00000527797 VWC2LB2RUY7 222 aa17.21■□□□□ 0.35
VPS28-208ENST00000527797 RPL39P5Q59GN2 51 aa17.21■□□□□ 0.35
VPS28-208ENST00000527797 GGNBP1Q5YKI7 109 aa17.21■□□□□ 0.35
VPS28-208ENST00000527797 LYZL2Q7Z4W2 148 aa17.21■□□□□ 0.35
VPS28-208ENST00000527797 NOXA1Q86UR1 476 aa17.21■□□□□ 0.35
VPS28-208ENST00000527797 SELENOHQ8IZQ5 122 aaKnown RBP17.21■□□□□ 0.35
VPS28-208ENST00000527797 C8orf31Q8N9H6 132 aa17.21■□□□□ 0.35
VPS28-208ENST00000527797 TCTEX1D2Q8WW35 142 aa17.21■□□□□ 0.35
VPS28-208ENST00000527797 IL22RA2Q969J5 263 aa17.21■□□□□ 0.35
VPS28-208ENST00000527797 TMEM133Q9H2Q1 129 aa17.21■□□□□ 0.35
VPS28-208ENST00000527797 KIAA1324LA8MWY0 1029 aaPredicted RBP17.21■□□□□ 0.35
VPS28-208ENST00000527797 M0R1X1 148 aa17.21■□□□□ 0.35
VPS28-208ENST00000527797 PROP1O75360 226 aa17.21■□□□□ 0.35
VPS28-208ENST00000527797 ZFP36P26651 326 aaKnown RBP17.21■□□□□ 0.35
VPS28-208ENST00000527797 RPL30P62888 115 aaKnown RBP17.21■□□□□ 0.35
VPS28-208ENST00000527797 CYCSP99999 105 aaKnown RBP17.21■□□□□ 0.35
VPS28-208ENST00000527797 ABHD12Q8N2K0 398 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 84.9 ms