RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 RFESDQ8TAC1 157 aa15.21■□□□□ 0.03
COL9A3-205ENST00000466192 NEUROG1Q92886 237 aa15.21■□□□□ 0.03
COL9A3-205ENST00000466192 NINJ1Q92982 152 aa15.21■□□□□ 0.03
COL9A3-205ENST00000466192 ARL11Q969Q4 196 aa15.21■□□□□ 0.03
COL9A3-205ENST00000466192 PLPPR2Q96GM1 343 aa15.21■□□□□ 0.03
COL9A3-205ENST00000466192 TOLLIPQ9H0E2 274 aa15.21■□□□□ 0.03
COL9A3-205ENST00000466192 DCAF16Q9NXF7 216 aa15.21■□□□□ 0.03
COL9A3-205ENST00000466192 PRELID3BQ9Y3B1 194 aa15.21■□□□□ 0.03
COL9A3-205ENST00000466192 ODAMA1E959 279 aa15.21■□□□□ 0.02
COL9A3-205ENST00000466192 FAM24AA6NFZ4 105 aa15.21■□□□□ 0.02
COL9A3-205ENST00000466192 C15orf65H3BRN8 121 aa15.21■□□□□ 0.02
COL9A3-205ENST00000466192 IGKV1-39P01597 117 aa15.21■□□□□ 0.02
COL9A3-205ENST00000466192 IGKV1D-39P04432 117 aa15.21■□□□□ 0.02
COL9A3-205ENST00000466192 ADH4P08319 380 aa15.21■□□□□ 0.02
COL9A3-205ENST00000466192 WNT2P09544 360 aa15.21■□□□□ 0.02
COL9A3-205ENST00000466192 GRNP28799 593 aaKnown RBP15.21■□□□□ 0.02
COL9A3-205ENST00000466192 PPP1CCP36873 323 aaKnown RBP15.21■□□□□ 0.02
COL9A3-205ENST00000466192 ADORA2A-AS1P86434 159 aa15.21■□□□□ 0.02
COL9A3-205ENST00000466192 FLI1Q01543 452 aaPredicted RBP15.21■□□□□ 0.02
COL9A3-205ENST00000466192 FBXL19-AS1Q494R0 122 aa15.21■□□□□ 0.02
COL9A3-205ENST00000466192 OR2C3Q8N628 320 aa15.21■□□□□ 0.02
COL9A3-205ENST00000466192 UBAC2Q8NBM4 344 aa15.21■□□□□ 0.02
COL9A3-205ENST00000466192 CLRN3Q8NCR9 226 aa15.21■□□□□ 0.02
COL9A3-205ENST00000466192 RNASE11Q8TAA1 199 aaKnown RBP15.21■□□□□ 0.02
COL9A3-205ENST00000466192 OR2D2Q9H210 308 aa15.21■□□□□ 0.02
COL9A3-205ENST00000466192 C11orf1Q9H5F2 150 aa15.21■□□□□ 0.02
COL9A3-205ENST00000466192 LPAR3Q9UBY5 353 aa15.21■□□□□ 0.02
COL9A3-205ENST00000466192 TPRP12270 2363 aaKnown RBP15.2■□□□□ 0.02
COL9A3-205ENST00000466192 SELLP14151 372 aa15.2■□□□□ 0.02
COL9A3-205ENST00000466192 PVALBP20472 110 aaPredicted RBP15.2■□□□□ 0.02
COL9A3-205ENST00000466192 ID3Q02535 119 aa15.2■□□□□ 0.02
COL9A3-205ENST00000466192 CDSNQ15517 529 aa15.2■□□□□ 0.02
COL9A3-205ENST00000466192 PPP1R35Q8TAP8 253 aa15.2■□□□□ 0.02
COL9A3-205ENST00000466192 LINC01560Q8TB33 94 aa15.2■□□□□ 0.02
COL9A3-205ENST00000466192 GPR146Q96CH1 333 aa15.2■□□□□ 0.02
COL9A3-205ENST00000466192 PLEKHF2Q9H8W4 249 aa15.2■□□□□ 0.02
COL9A3-205ENST00000466192 LIN7CQ9NUP9 197 aaKnown RBP15.2■□□□□ 0.02
COL9A3-205ENST00000466192 IGHV3-43A0A0B4J1X8 118 aa15.19■□□□□ 0.02
COL9A3-205ENST00000466192 E7EQL1 145 aa15.19■□□□□ 0.02
COL9A3-205ENST00000466192 DNASE2O00115 360 aaPredicted RBP15.19■□□□□ 0.02
COL9A3-205ENST00000466192 CD55P08174 381 aa15.19■□□□□ 0.02
COL9A3-205ENST00000466192 IGHV3-43DP0DP04 118 aa15.19■□□□□ 0.02
COL9A3-205ENST00000466192 EWSR1Q01844 656 aaKnown RBP eCLIP15.19■□□□□ 0.02
COL9A3-205ENST00000466192 ZNF585BQ52M93 769 aa15.19■□□□□ 0.02
COL9A3-205ENST00000466192 STUMQ69YW2 141 aa15.19■□□□□ 0.02
COL9A3-205ENST00000466192 DUX4L9Q6RFH8 374 aaPredicted RBP15.19■□□□□ 0.02
COL9A3-205ENST00000466192 ZNF645Q8N7E2 425 aa15.19■□□□□ 0.02
COL9A3-205ENST00000466192 DEFB108BQ8NET1 73 aa15.19■□□□□ 0.02
COL9A3-205ENST00000466192 DIRC2Q96SL1 478 aa15.19■□□□□ 0.02
COL9A3-205ENST00000466192 ANKHD1Q8IWZ3 2542 aaKnown RBP15.19■□□□□ 0.02
COL9A3-205ENST00000466192 OMGP23515 440 aa15.19■□□□□ 0.02
COL9A3-205ENST00000466192 VAMP2P63027 116 aa15.19■□□□□ 0.02
COL9A3-205ENST00000466192 TLE1Q04724 770 aa15.19■□□□□ 0.02
COL9A3-205ENST00000466192 ZNF808Q8N4W9 903 aaPredicted RBP15.19■□□□□ 0.02
COL9A3-205ENST00000466192 RNASE6Q93091 150 aaKnown RBP15.19■□□□□ 0.02
COL9A3-205ENST00000466192 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP15.18■□□□□ 0.02
COL9A3-205ENST00000466192 MED6O75586 246 aa15.18■□□□□ 0.02
COL9A3-205ENST00000466192 AKR1C2P52895 323 aa15.18■□□□□ 0.02
COL9A3-205ENST00000466192 TRAT1Q6PIZ9 186 aa15.18■□□□□ 0.02
COL9A3-205ENST00000466192 Q6ZRM9 215 aa15.18■□□□□ 0.02
COL9A3-205ENST00000466192 ZNF561Q8N587 486 aa15.18■□□□□ 0.02
COL9A3-205ENST00000466192 SDSLQ96GA7 329 aa15.18■□□□□ 0.02
COL9A3-205ENST00000466192 C5orf30Q96GV9 206 aa15.18■□□□□ 0.02
COL9A3-205ENST00000466192 NARS2Q96I59 477 aaKnown RBP15.18■□□□□ 0.02
COL9A3-205ENST00000466192 ABHD14BQ96IU4 210 aa15.18■□□□□ 0.02
COL9A3-205ENST00000466192 PLA2G2EQ9NZK7 142 aa15.18■□□□□ 0.02
COL9A3-205ENST00000466192 BORCS7-ASMTA0A0B4J1R7 106 aa15.18■□□□□ 0.02
COL9A3-205ENST00000466192 PIGBOS1A0A0B4J2F0 54 aa15.18■□□□□ 0.02
COL9A3-205ENST00000466192 IGSF23A1L1A6 192 aa15.18■□□□□ 0.02
COL9A3-205ENST00000466192 DEFB108AA8MXU0 73 aa15.18■□□□□ 0.02
COL9A3-205ENST00000466192 WRBO00258 174 aa15.18■□□□□ 0.02
COL9A3-205ENST00000466192 SPINT2O43291 252 aa15.18■□□□□ 0.02
COL9A3-205ENST00000466192 CHST1O43916 411 aa15.18■□□□□ 0.02
COL9A3-205ENST00000466192 TMEM50AO95807 157 aa15.18■□□□□ 0.02
COL9A3-205ENST00000466192 TNFRSF1AP19438 455 aa15.18■□□□□ 0.02
COL9A3-205ENST00000466192 EDDM3BP56851 147 aa15.18■□□□□ 0.02
COL9A3-205ENST00000466192 LTC4SQ16873 150 aa15.18■□□□□ 0.02
COL9A3-205ENST00000466192 CR1LQ2VPA4 569 aa15.18■□□□□ 0.02
COL9A3-205ENST00000466192 ATRAIDQ6UW56 229 aa15.18■□□□□ 0.02
COL9A3-205ENST00000466192 BPIFCQ8NFQ6 507 aa15.18■□□□□ 0.02
COL9A3-205ENST00000466192 A0A1B0GU03 582 aa15.17■□□□□ 0.02
COL9A3-205ENST00000466192 VSTM5A8MXK1 200 aa15.17■□□□□ 0.02
COL9A3-205ENST00000466192 SIGLEC5O15389 551 aa15.17■□□□□ 0.02
COL9A3-205ENST00000466192 PITX3O75364 302 aa15.17■□□□□ 0.02
COL9A3-205ENST00000466192 IGKV1-5P01602 117 aa15.17■□□□□ 0.02
COL9A3-205ENST00000466192 IRF2P14316 349 aa15.17■□□□□ 0.02
COL9A3-205ENST00000466192 GZMHP20718 246 aa15.17■□□□□ 0.02
COL9A3-205ENST00000466192 SULT1A2P50226 295 aa15.17■□□□□ 0.02
COL9A3-205ENST00000466192 HTD2P86397 168 aa15.17■□□□□ 0.02
COL9A3-205ENST00000466192 AKR1C1Q04828 323 aa15.17■□□□□ 0.02
COL9A3-205ENST00000466192 MST1LQ2TV78 715 aa15.17■□□□□ 0.02
COL9A3-205ENST00000466192 SMIM8Q96KF7 97 aa15.17■□□□□ 0.02
COL9A3-205ENST00000466192 GAFA1Q96PS6 74 aa15.17■□□□□ 0.02
COL9A3-205ENST00000466192 HRH4Q9H3N8 390 aa15.17■□□□□ 0.02
COL9A3-205ENST00000466192 LYRM2Q9NU23 88 aaPredicted RBP15.17■□□□□ 0.02
COL9A3-205ENST00000466192 CACNG5Q9UF02 275 aa15.17■□□□□ 0.02
COL9A3-205ENST00000466192 GYPAP02724 150 aa15.17■□□□□ 0.02
COL9A3-205ENST00000466192 LPAR6P43657 344 aa15.17■□□□□ 0.02
COL9A3-205ENST00000466192 CLINT1Q14677 625 aa15.17■□□□□ 0.02
COL9A3-205ENST00000466192 OR2B11Q5JQS5 317 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms