RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 GABRA6Q16445 453 aa16.12■□□□□ 0.17
SMARCC1-201ENST00000254480 TLNRD1Q9H1K6 362 aa16.12■□□□□ 0.17
SMARCC1-201ENST00000254480 ZMAT5Q9UDW3 170 aaKnown RBP16.12■□□□□ 0.17
SMARCC1-201ENST00000254480 GDF9O60383 454 aa16.12■□□□□ 0.17
SMARCC1-201ENST00000254480 RPL27AP46776 148 aaKnown RBP16.12■□□□□ 0.17
SMARCC1-201ENST00000254480 ERVFRD-1P60508 538 aa16.12■□□□□ 0.17
SMARCC1-201ENST00000254480 GBGT1Q8N5D6 347 aa16.12■□□□□ 0.17
SMARCC1-201ENST00000254480 OR4C46A6NHA9 309 aa16.11■□□□□ 0.17
SMARCC1-201ENST00000254480 CDS2O95674 445 aa16.11■□□□□ 0.17
SMARCC1-201ENST00000254480 PAFAH1B2P68402 229 aa16.11■□□□□ 0.17
SMARCC1-201ENST00000254480 WNT2BQ93097 391 aa16.11■□□□□ 0.17
SMARCC1-201ENST00000254480 PXMP4Q9Y6I8 212 aa16.11■□□□□ 0.17
SMARCC1-201ENST00000254480 MFSD2BA6NFX1 497 aa16.11■□□□□ 0.17
SMARCC1-201ENST00000254480 A1L4Q6 167 aa16.11■□□□□ 0.17
SMARCC1-201ENST00000254480 MGST3O14880 152 aa16.11■□□□□ 0.17
SMARCC1-201ENST00000254480 SMPD2O60906 423 aa16.11■□□□□ 0.17
SMARCC1-201ENST00000254480 NPBWR2P48146 333 aa16.11■□□□□ 0.17
SMARCC1-201ENST00000254480 DLEC1Q9Y238 1755 aa16.11■□□□□ 0.17
SMARCC1-201ENST00000254480 ZNFX1Q9P2E3 1918 aaKnown RBP16.11■□□□□ 0.17
SMARCC1-201ENST00000254480 SLC25A17O43808 307 aa16.11■□□□□ 0.17
SMARCC1-201ENST00000254480 HPRT1P00492 218 aa16.11■□□□□ 0.17
SMARCC1-201ENST00000254480 NUBP1P53384 320 aa16.11■□□□□ 0.17
SMARCC1-201ENST00000254480 LINC00596Q86U02 117 aa16.11■□□□□ 0.17
SMARCC1-201ENST00000254480 ANAPC16Q96DE5 110 aa16.11■□□□□ 0.17
SMARCC1-201ENST00000254480 COL11A1P12107 1806 aaPredicted RBP16.11■□□□□ 0.17
SMARCC1-201ENST00000254480 A0A0U1RQV5 110 aa16.11■□□□□ 0.17
SMARCC1-201ENST00000254480 GHITMQ9H3K2 345 aa16.11■□□□□ 0.17
SMARCC1-201ENST00000254480 AP4M1O00189 453 aa16.1■□□□□ 0.17
SMARCC1-201ENST00000254480 HLA-DQB1P01920 261 aa16.1■□□□□ 0.17
SMARCC1-201ENST00000254480 APCSP02743 223 aa16.1■□□□□ 0.17
SMARCC1-201ENST00000254480 ELOBQ15370 118 aa16.1■□□□□ 0.17
SMARCC1-201ENST00000254480 SLC25A47Q6Q0C1 308 aa16.1■□□□□ 0.17
SMARCC1-201ENST00000254480 STARD6P59095 220 aa16.1■□□□□ 0.17
SMARCC1-201ENST00000254480 CHAC2Q8WUX2 184 aa16.1■□□□□ 0.17
SMARCC1-201ENST00000254480 MAP1LC3CQ9BXW4 147 aa16.1■□□□□ 0.17
SMARCC1-201ENST00000254480 DHRS7CA6NNS2 312 aa16.1■□□□□ 0.17
SMARCC1-201ENST00000254480 SMAD7O15105 426 aaKnown RBP16.1■□□□□ 0.17
SMARCC1-201ENST00000254480 CRYBA2P53672 197 aa16.1■□□□□ 0.17
SMARCC1-201ENST00000254480 ARL6IP6Q8N6S5 226 aa16.1■□□□□ 0.17
SMARCC1-201ENST00000254480 AKIRIN1Q9H9L7 192 aaPredicted RBP16.1■□□□□ 0.17
SMARCC1-201ENST00000254480 SF3B6Q9Y3B4 125 aaKnown RBP16.1■□□□□ 0.17
SMARCC1-201ENST00000254480 AHCTF1Q8WYP5 2266 aa16.1■□□□□ 0.17
SMARCC1-201ENST00000254480 CELA3AP09093 270 aa16.1■□□□□ 0.17
SMARCC1-201ENST00000254480 ERGP11308 486 aa16.1■□□□□ 0.17
SMARCC1-201ENST00000254480 HIST1H1BP16401 226 aaKnown RBP16.1■□□□□ 0.17
SMARCC1-201ENST00000254480 CXCL2P19875 107 aa16.1■□□□□ 0.17
SMARCC1-201ENST00000254480 HOXA4Q00056 320 aaPredicted RBP16.1■□□□□ 0.17
SMARCC1-201ENST00000254480 CEBPEQ15744 281 aa16.1■□□□□ 0.17
SMARCC1-201ENST00000254480 C16orf92Q96LL3 132 aa16.1■□□□□ 0.17
SMARCC1-201ENST00000254480 PACRGQ96M98 296 aaPredicted RBP16.1■□□□□ 0.17
SMARCC1-201ENST00000254480 GPX7Q96SL4 187 aaPredicted RBP16.1■□□□□ 0.17
SMARCC1-201ENST00000254480 MRGPRGQ86SM5 289 aa16.1■□□□□ 0.17
SMARCC1-201ENST00000254480 IGLV1-36A0A0B4J1U3 117 aa16.09■□□□□ 0.17
SMARCC1-201ENST00000254480 HYPMO75409 117 aa16.09■□□□□ 0.17
SMARCC1-201ENST00000254480 PNRC1Q12796 327 aaPredicted RBP16.09■□□□□ 0.17
SMARCC1-201ENST00000254480 CCDC144NLQ6NUI1 221 aa16.09■□□□□ 0.17
SMARCC1-201ENST00000254480 RBKSQ9H477 322 aa16.09■□□□□ 0.17
SMARCC1-201ENST00000254480 TRIOBPQ9H2D6 2365 aa16.09■□□□□ 0.17
SMARCC1-201ENST00000254480 COL11A2P13942 1736 aaPredicted RBP16.09■□□□□ 0.17
SMARCC1-201ENST00000254480 GAPDHP04406 335 aaKnown RBP16.09■□□□□ 0.17
SMARCC1-201ENST00000254480 UNC119Q13432 240 aa16.09■□□□□ 0.17
SMARCC1-201ENST00000254480 CYB561D1Q8N8Q1 229 aa16.09■□□□□ 0.17
SMARCC1-201ENST00000254480 CTXND1A0A1B0GTU2 59 aa16.09■□□□□ 0.17
SMARCC1-201ENST00000254480 HIST1H1EP10412 219 aaKnown RBP16.09■□□□□ 0.17
SMARCC1-201ENST00000254480 UNQ5815/PRO19632Q6UWF5 114 aa16.09■□□□□ 0.17
SMARCC1-201ENST00000254480 KLF14Q8TD94 323 aaPredicted RBP16.09■□□□□ 0.17
SMARCC1-201ENST00000254480 DDA1Q9BW61 102 aa16.09■□□□□ 0.17
SMARCC1-201ENST00000254480 PAM16Q9Y3D7 125 aa16.09■□□□□ 0.17
SMARCC1-201ENST00000254480 AHRRA9YTQ3 701 aa16.09■□□□□ 0.17
SMARCC1-201ENST00000254480 TMEM229AB2RXF0 380 aa16.09■□□□□ 0.17
SMARCC1-201ENST00000254480 FDCSPQ8NFU4 85 aa16.09■□□□□ 0.17
SMARCC1-201ENST00000254480 VN1R17PQ8TDU5 208 aa16.09■□□□□ 0.17
SMARCC1-201ENST00000254480 PDE6DO43924 150 aa16.08■□□□□ 0.17
SMARCC1-201ENST00000254480 HSPB1P04792 205 aaKnown RBP16.08■□□□□ 0.17
SMARCC1-201ENST00000254480 RFPL3SP0C7P2 107 aa16.08■□□□□ 0.17
SMARCC1-201ENST00000254480 HSD17B13Q7Z5P4 300 aaPredicted RBP16.08■□□□□ 0.17
SMARCC1-201ENST00000254480 ZBTB34Q8NCN2 500 aa16.08■□□□□ 0.17
SMARCC1-201ENST00000254480 CA11O75493 328 aa16.08■□□□□ 0.17
SMARCC1-201ENST00000254480 LINC00869P0C866 280 aa16.08■□□□□ 0.17
SMARCC1-201ENST00000254480 P2RY6Q15077 328 aa16.08■□□□□ 0.17
SMARCC1-201ENST00000254480 OR4A5Q8NH83 315 aa16.08■□□□□ 0.17
SMARCC1-201ENST00000254480 TBX15Q96SF7 602 aa16.08■□□□□ 0.17
SMARCC1-201ENST00000254480 H3BVH4 76 aa16.08■□□□□ 0.16
SMARCC1-201ENST00000254480 NDUFB4O95168 129 aa16.08■□□□□ 0.16
SMARCC1-201ENST00000254480 UCNP55089 124 aa16.08■□□□□ 0.16
SMARCC1-201ENST00000254480 SRSF9Q13242 221 aaKnown RBP eCLIP16.08■□□□□ 0.16
SMARCC1-201ENST00000254480 ZXDCQ2QGD7 858 aaPredicted RBP16.08■□□□□ 0.16
SMARCC1-201ENST00000254480 MIC13Q5XKP0 118 aa16.08■□□□□ 0.16
SMARCC1-201ENST00000254480 EIF4E3Q8N5X7 224 aaKnown RBP16.08■□□□□ 0.16
SMARCC1-201ENST00000254480 MRPS18AQ9NVS2 196 aaKnown RBP16.08■□□□□ 0.16
SMARCC1-201ENST00000254480 QSER1Q2KHR3 1735 aa16.08■□□□□ 0.16
SMARCC1-201ENST00000254480 DOCK3Q8IZD9 2030 aa16.08■□□□□ 0.16
SMARCC1-201ENST00000254480 OR2A4O95047 310 aa16.08■□□□□ 0.16
SMARCC1-201ENST00000254480 CTSSP25774 331 aa16.08■□□□□ 0.16
SMARCC1-201ENST00000254480 GLIPR1P48060 266 aa16.08■□□□□ 0.16
SMARCC1-201ENST00000254480 OR2A7Q96R45 310 aa16.08■□□□□ 0.16
SMARCC1-201ENST00000254480 TNFSF18Q9UNG2 199 aa16.08■□□□□ 0.16
SMARCC1-201ENST00000254480 SSX8Q7RTT4 187 aa16.08■□□□□ 0.16
SMARCC1-201ENST00000254480 DLL3Q9NYJ7 618 aa16.08■□□□□ 0.16
SMARCC1-201ENST00000254480 ATAD5Q96QE3 1844 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms