RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 EGR2P11161 476 aaPredicted RBP6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 FCGR1AP12314 374 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 BDKRB2P30411 391 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 ETV1P50549 477 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 INSL3P51460 131 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 LINC00205P59089 165 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 C5orf64Q2M2E5 130 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 MORN2Q502X0 79 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 RPL39P5Q59GN2 51 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 C19orf54Q5BKX5 351 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 NHLRC3Q5JS37 347 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 SLC25A30Q5SVS4 291 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 MEDAGQ5VYS4 303 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 RAB12Q6IQ22 244 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 ACSM6Q6P461 480 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 FAM131AQ6UXB0 335 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 CBR4Q8N4T8 237 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 C8orf31Q8N9H6 132 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 MINDY2Q8NBR6 621 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 GPR148Q8TDV2 347 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 APH1BQ8WW43 257 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 S100A13Q99584 98 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 FAM110AQ9BQ89 295 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 TM2D3Q9BRN9 247 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 ABHD14AQ9BUJ0 271 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 PARP12Q9H0J9 701 aaKnown RBP6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 IFT22Q9H7X7 185 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 TAF9BQ9HBM6 251 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 OR2S2Q9NQN1 319 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 IL36GQ9NZH8 169 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 ADAM30Q9UKF2 790 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 GMPPBQ9Y5P6 360 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 MCRIP1C9JLW8 97 aa6.63□□□□□ -1.35
SHKBP1-220ENST00000599716 H3BNX3 289 aa6.63□□□□□ -1.35
SHKBP1-220ENST00000599716 ST8SIA5O15466 376 aa6.63□□□□□ -1.35
SHKBP1-220ENST00000599716 TXNL1O43396 289 aa6.63□□□□□ -1.35
SHKBP1-220ENST00000599716 LANCL1O43813 399 aa6.63□□□□□ -1.35
SHKBP1-220ENST00000599716 FADS2O95864 444 aaKnown RBP6.63□□□□□ -1.35
SHKBP1-220ENST00000599716 LGALS1P09382 135 aaKnown RBP6.63□□□□□ -1.35
SHKBP1-220ENST00000599716 GTF2F2P13984 249 aa6.63□□□□□ -1.35
SHKBP1-220ENST00000599716 PPP3R1P63098 170 aa6.63□□□□□ -1.35
SHKBP1-220ENST00000599716 CX3CL1P78423 397 aa6.63□□□□□ -1.35
SHKBP1-220ENST00000599716 MPV17LQ2QL34 196 aa6.63□□□□□ -1.35
SHKBP1-220ENST00000599716 SIGIRRQ6IA17 410 aa6.63□□□□□ -1.35
SHKBP1-220ENST00000599716 LIN54Q6MZP7 749 aa6.63□□□□□ -1.35
SHKBP1-220ENST00000599716 GLIPR1L1Q6UWM5 242 aa6.63□□□□□ -1.35
SHKBP1-220ENST00000599716 STX19Q8N4C7 294 aa6.63□□□□□ -1.35
SHKBP1-220ENST00000599716 JAGN1Q8N5M9 183 aa6.63□□□□□ -1.35
SHKBP1-220ENST00000599716 OR6Q1Q8NGQ2 317 aa6.63□□□□□ -1.35
SHKBP1-220ENST00000599716 FAM46BQ96A09 425 aa6.63□□□□□ -1.35
SHKBP1-220ENST00000599716 SLC29A1Q99808 456 aa6.63□□□□□ -1.35
SHKBP1-220ENST00000599716 SELENOIQ9C0D9 397 aa6.63□□□□□ -1.35
SHKBP1-220ENST00000599716 KCNK15Q9H427 330 aa6.63□□□□□ -1.35
SHKBP1-220ENST00000599716 TMEM138Q9NPI0 162 aa6.63□□□□□ -1.35
SHKBP1-220ENST00000599716 RCC2Q9P258 522 aaKnown RBP6.63□□□□□ -1.35
SHKBP1-220ENST00000599716 CLEC2DQ9UHP7 191 aa6.63□□□□□ -1.35
SHKBP1-220ENST00000599716 MRPS28Q9Y2Q9 187 aaKnown RBP6.63□□□□□ -1.35
SHKBP1-220ENST00000599716 ORC6Q9Y5N6 252 aa6.63□□□□□ -1.35
SHKBP1-220ENST00000599716 ANKRD34BA5PLL1 514 aa6.62□□□□□ -1.35
SHKBP1-220ENST00000599716 LDLRAD4O15165 306 aa6.62□□□□□ -1.35
SHKBP1-220ENST00000599716 CRTAPO75718 401 aaPredicted RBP6.62□□□□□ -1.35
SHKBP1-220ENST00000599716 MAS1P04201 325 aa6.62□□□□□ -1.35
SHKBP1-220ENST00000599716 CD2P06729 351 aa6.62□□□□□ -1.35
SHKBP1-220ENST00000599716 ARSBP15848 533 aa6.62□□□□□ -1.35
SHKBP1-220ENST00000599716 IGFBP3P17936 291 aaPredicted RBP6.62□□□□□ -1.35
SHKBP1-220ENST00000599716 TPPP2P59282 170 aa6.62□□□□□ -1.35
SHKBP1-220ENST00000599716 PITPNAQ00169 270 aa6.62□□□□□ -1.35
SHKBP1-220ENST00000599716 RIPK1Q13546 671 aa6.62□□□□□ -1.35
SHKBP1-220ENST00000599716 PLGLAQ15195 96 aa6.62□□□□□ -1.35
SHKBP1-220ENST00000599716 C6orf183Q5T699 404 aa6.62□□□□□ -1.35
SHKBP1-220ENST00000599716 OR10K2Q6IF99 312 aa6.62□□□□□ -1.35
SHKBP1-220ENST00000599716 ZNF833PQ6ZTB9 187 aa6.62□□□□□ -1.35
SHKBP1-220ENST00000599716 DRAXINQ8NBI3 349 aaPredicted RBP6.62□□□□□ -1.35
SHKBP1-220ENST00000599716 LFNGQ8NES3 379 aa6.62□□□□□ -1.35
SHKBP1-220ENST00000599716 RHOXF1Q8NHV9 184 aa6.62□□□□□ -1.35
SHKBP1-220ENST00000599716 MRPL30Q8TCC3 161 aaKnown RBP6.62□□□□□ -1.35
SHKBP1-220ENST00000599716 IL1F10Q8WWZ1 152 aa6.62□□□□□ -1.35
SHKBP1-220ENST00000599716 ISOC1Q96CN7 298 aa6.62□□□□□ -1.35
SHKBP1-220ENST00000599716 MRPS24Q96EL2 167 aaKnown RBP6.62□□□□□ -1.35
SHKBP1-220ENST00000599716 CPNE2Q96FN4 548 aaPredicted RBP6.62□□□□□ -1.35
SHKBP1-220ENST00000599716 MRPL48Q96GC5 212 aaKnown RBP6.62□□□□□ -1.35
SHKBP1-220ENST00000599716 OR4C12Q96R67 309 aa6.62□□□□□ -1.35
SHKBP1-220ENST00000599716 IFI27L2Q9H2X8 130 aa6.62□□□□□ -1.35
SHKBP1-220ENST00000599716 C19orf73Q9NVV2 129 aa6.62□□□□□ -1.35
SHKBP1-220ENST00000599716 ZNF580Q9UK33 172 aa6.62□□□□□ -1.35
SHKBP1-220ENST00000599716 FOXA2Q9Y261 457 aaPredicted RBP6.62□□□□□ -1.35
SHKBP1-220ENST00000599716 IZUMO1RA6ND01 250 aa6.61□□□□□ -1.35
SHKBP1-220ENST00000599716 WBP4O75554 376 aaKnown RBP6.61□□□□□ -1.35
SHKBP1-220ENST00000599716 NDUFA3O95167 84 aa6.61□□□□□ -1.35
SHKBP1-220ENST00000599716 TRBV12-3P01733 135 aa6.61□□□□□ -1.35
SHKBP1-220ENST00000599716 OR8U9P0C7N5 309 aa6.61□□□□□ -1.35
SHKBP1-220ENST00000599716 CT45A6P0DMU7 189 aa6.61□□□□□ -1.35
SHKBP1-220ENST00000599716 CT45A5P0DMU8 189 aa6.61□□□□□ -1.35
SHKBP1-220ENST00000599716 CT45A7P0DMV0 189 aa6.61□□□□□ -1.35
SHKBP1-220ENST00000599716 MGMTP16455 207 aa6.61□□□□□ -1.35
SHKBP1-220ENST00000599716 ALDH3A2P51648 485 aa6.61□□□□□ -1.35
SHKBP1-220ENST00000599716 RPS11P62280 158 aaKnown RBP eCLIP6.61□□□□□ -1.35
SHKBP1-220ENST00000599716 RAB40BQ12829 278 aa6.61□□□□□ -1.35
SHKBP1-220ENST00000599716 HAGHQ16775 308 aa6.61□□□□□ -1.35
SHKBP1-220ENST00000599716 ACTBL2Q562R1 376 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms