RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 AP1ARQ63HQ0 302 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 ZFAND6Q6FIF0 208 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 REEP3Q6NUK4 255 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 ULK3Q6PHR2 472 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 IGFL1Q6UW32 110 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 UNQ9370/PRO34162Q6UXP9 181 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 ZNF620Q6ZNG0 422 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 CCDC121Q6ZUS5 278 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 VTCN1Q7Z7D3 282 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 LHFPL4Q7Z7J7 247 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 SLC30A8Q8IWU4 369 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 NRMQ8IXM6 262 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 DYNAPQ8N1N2 210 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 NATD1Q8N6N6 113 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 LRRC75AQ8NAA5 344 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 ZSCAN4Q8NAM6 433 aaPredicted RBP1.81□□□□□ -2.12
SCFD1-219ENST00000556413 OR4M1Q8NGD0 313 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 OR51L1Q8NGJ5 315 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 OR10A6Q8NH74 314 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 OR1F12Q8NHA8 337 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 CNIH3Q8TBE1 160 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 LRRC29Q8WV35 223 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 DNAJA4Q8WW22 397 aaPredicted RBP1.81□□□□□ -2.12
SCFD1-219ENST00000556413 TMEM239Q8WW34 195 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 ANP32BQ92688 251 aaKnown RBP1.81□□□□□ -2.12
SCFD1-219ENST00000556413 RPL3LQ92901 407 aaKnown RBP1.81□□□□□ -2.12
SCFD1-219ENST00000556413 RPUSD4Q96CM3 377 aaKnown RBP1.81□□□□□ -2.12
SCFD1-219ENST00000556413 TPD52L3Q96J77 140 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 ZNF488Q96MN9 340 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 ZNF607Q96SK3 696 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 GPA33Q99795 319 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 SLC30A2Q9BRI3 323 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 ADAT1Q9BUB4 502 aaKnown RBP1.81□□□□□ -2.12
SCFD1-219ENST00000556413 MRPL13Q9BYD1 178 aaKnown RBP1.81□□□□□ -2.12
SCFD1-219ENST00000556413 NMNAT2Q9BZQ4 307 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 FGF23Q9GZV9 251 aaPredicted RBP1.81□□□□□ -2.12
SCFD1-219ENST00000556413 NSRP1Q9H0G5 558 aaKnown RBP1.81□□□□□ -2.12
SCFD1-219ENST00000556413 SYT4Q9H2B2 425 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 PPDPFQ9H3Y8 114 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 RMND5AQ9H871 391 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 BCL2L10Q9HD36 194 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 DNAJC27Q9NZQ0 273 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 CALML5Q9NZT1 146 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 ZNRD1Q9P1U0 126 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 VPREB3Q9UKI3 123 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 USH1CQ9Y6N9 552 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 TANC2Q9HCD6 1990 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 NOTCH1P46531 2555 aa1.81□□□□□ -2.12
SCFD1-219ENST00000556413 KIAA1109Q2LD37 5005 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 KIR2DS1A0A191URI9 304 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 BTBD17A6NE02 478 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 GGT3PA6NGU5 568 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 EFCAB9A8MZ26 197 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 ZNF879B4DU55 563 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 CLDN34H7C241 214 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 NPFFO15130 113 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 SNNO75324 88 aaPredicted RBP1.8□□□□□ -2.12
SCFD1-219ENST00000556413 ERLIN1O75477 346 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 CLPXO76031 633 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 ZNF682O95780 498 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 PAHP00439 452 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 MT-ATP6P00846 226 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 INSP01308 110 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 OPN1MWP04001 364 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 GYPBP06028 91 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 GUSBP08236 651 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 CST2P09228 141 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 OPN1MW2P0DN77 364 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 OPN1MW3P0DN78 364 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 CALCBP10092 127 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 IDO1P14902 403 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 CCL3L1P16619 93 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 TBPP20226 339 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 KITLGP21583 273 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 GGT2P36268 569 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 ATP6V1E1P36543 226 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 DAP3P51398 398 aaKnown RBP1.8□□□□□ -2.12
SCFD1-219ENST00000556413 PRKXP51817 358 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 RAB25P57735 213 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 NAA20P61599 178 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 ZNF92Q03936 586 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 KRR1Q13601 381 aaKnown RBP1.8□□□□□ -2.12
SCFD1-219ENST00000556413 MOBPQ13875 183 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 OR8G1Q15617 311 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 HIST3H3Q16695 136 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 DGUOKQ16854 277 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 GLYATL3Q5SZD4 288 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 LDLRAD2Q5SZI1 272 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 HCP5Q6MZN7 132 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 SMARCD3Q6STE5 483 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 LRRN1Q6UXK5 716 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 MRPL21Q7Z2W9 205 aaKnown RBP1.8□□□□□ -2.12
SCFD1-219ENST00000556413 ELMOD2Q8IZ81 293 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 OR6V1Q8N148 313 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 FAM86B1Q8N7N1 296 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 CYB561A3Q8NBI2 242 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 SDR9C7Q8NEX9 313 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 OR8G5Q8NG78 346 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 OR56B2PQ8NGI1 322 aa1.8□□□□□ -2.12
SCFD1-219ENST00000556413 OR56B1Q8NGI3 324 aa1.8□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms