RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 LIN54Q6MZP7 749 aa17.33■□□□□ 0.37
VPS28-208ENST00000527797 KCTD9Q7L273 389 aa17.33■□□□□ 0.37
VPS28-208ENST00000527797 TBC1D26Q86UD7 250 aa17.33■□□□□ 0.37
VPS28-208ENST00000527797 FAM216AQ8WUB2 273 aa17.33■□□□□ 0.37
VPS28-208ENST00000527797 GALNT14Q96FL9 552 aa17.33■□□□□ 0.37
VPS28-208ENST00000527797 FYTTD1Q96QD9 318 aaKnown RBP17.33■□□□□ 0.37
VPS28-208ENST00000527797 NARFLQ9H6Q4 476 aa17.33■□□□□ 0.37
VPS28-208ENST00000527797 BARX1Q9HBU1 254 aaPredicted RBP17.33■□□□□ 0.37
VPS28-208ENST00000527797 PGLYRP1O75594 196 aaPredicted RBP17.32■□□□□ 0.36
VPS28-208ENST00000527797 CCL3L1P16619 93 aa17.32■□□□□ 0.36
VPS28-208ENST00000527797 NFYBP25208 207 aa17.32■□□□□ 0.36
VPS28-208ENST00000527797 PRAMEF5Q5TYX0 476 aa17.32■□□□□ 0.36
VPS28-208ENST00000527797 ZNF645Q8N7E2 425 aa17.32■□□□□ 0.36
VPS28-208ENST00000527797 SUCNR1Q9BXA5 334 aa17.32■□□□□ 0.36
VPS28-208ENST00000527797 ZNF436Q9C0F3 470 aaPredicted RBP17.32■□□□□ 0.36
VPS28-208ENST00000527797 OR2D2Q9H210 308 aa17.32■□□□□ 0.36
VPS28-208ENST00000527797 RNF150Q9ULK6 438 aa17.32■□□□□ 0.36
VPS28-208ENST00000527797 SPTAN1Q13813 2472 aaKnown RBP17.32■□□□□ 0.36
VPS28-208ENST00000527797 C3orf85A0A1B0GTC6 90 aa17.32■□□□□ 0.36
VPS28-208ENST00000527797 F5H0A9 414 aaPredicted RBP17.32■□□□□ 0.36
VPS28-208ENST00000527797 BOLA2-SMG1P6H3BVE0 249 aa17.32■□□□□ 0.36
VPS28-208ENST00000527797 ATP5J2P56134 94 aa17.32■□□□□ 0.36
VPS28-208ENST00000527797 GNB2P62879 340 aa17.32■□□□□ 0.36
VPS28-208ENST00000527797 C2orf68Q2NKX9 166 aa17.32■□□□□ 0.36
VPS28-208ENST00000527797 ANKRD55Q3KP44 614 aa17.32■□□□□ 0.36
VPS28-208ENST00000527797 HEPN1Q6WQI6 88 aa17.32■□□□□ 0.36
VPS28-208ENST00000527797 TCTE3Q8IZS6 198 aa17.32■□□□□ 0.36
VPS28-208ENST00000527797 ZBTB34Q8NCN2 500 aa17.32■□□□□ 0.36
VPS28-208ENST00000527797 RPUSD1Q9UJJ7 312 aaKnown RBP17.32■□□□□ 0.36
VPS28-208ENST00000527797 PSG11Q9UQ72 335 aa17.32■□□□□ 0.36
VPS28-208ENST00000527797 KIAA2026Q5HYC2 2103 aa17.31■□□□□ 0.36
VPS28-208ENST00000527797 ITGB1BP1O14713 200 aa17.31■□□□□ 0.36
VPS28-208ENST00000527797 TNFSF12O43508 249 aa17.31■□□□□ 0.36
VPS28-208ENST00000527797 IGLV2-14P01704 120 aa17.31■□□□□ 0.36
VPS28-208ENST00000527797 OR5AC1P0C628 307 aa17.31■□□□□ 0.36
VPS28-208ENST00000527797 SSTR2P30874 369 aa17.31■□□□□ 0.36
VPS28-208ENST00000527797 MSMO1Q15800 293 aa17.31■□□□□ 0.36
VPS28-208ENST00000527797 SP6Q3SY56 376 aa17.31■□□□□ 0.36
VPS28-208ENST00000527797 LY6G6FQ5SQ64 297 aa17.31■□□□□ 0.36
VPS28-208ENST00000527797 DRAM1Q8N682 238 aa17.31■□□□□ 0.36
VPS28-208ENST00000527797 RAB39BQ96DA2 213 aa17.31■□□□□ 0.36
VPS28-208ENST00000527797 DMRTB1Q96MA1 342 aa17.31■□□□□ 0.36
VPS28-208ENST00000527797 PRR13Q9NZ81 148 aa17.31■□□□□ 0.36
VPS28-208ENST00000527797 A0A1W2PPH5 198 aa17.3■□□□□ 0.36
VPS28-208ENST00000527797 ST8SIA5O15466 376 aa17.3■□□□□ 0.36
VPS28-208ENST00000527797 PHF1O43189 567 aaPredicted RBP17.3■□□□□ 0.36
VPS28-208ENST00000527797 MMP23AO75900 390 aa17.3■□□□□ 0.36
VPS28-208ENST00000527797 TMEM187Q14656 261 aa17.3■□□□□ 0.36
VPS28-208ENST00000527797 ZNF787Q6DD87 383 aa17.3■□□□□ 0.36
VPS28-208ENST00000527797 DBX1A6NMT0 343 aa17.29■□□□□ 0.36
VPS28-208ENST00000527797 SIX6O95475 246 aa17.29■□□□□ 0.36
VPS28-208ENST00000527797 HLA-GP17693 338 aa17.29■□□□□ 0.36
VPS28-208ENST00000527797 RAB7AP51149 207 aa17.29■□□□□ 0.36
VPS28-208ENST00000527797 DLX6P56179 175 aa17.29■□□□□ 0.36
VPS28-208ENST00000527797 ESCO2Q56NI9 601 aa17.29■□□□□ 0.36
VPS28-208ENST00000527797 C8orf46Q8TAG6 207 aa17.29■□□□□ 0.36
VPS28-208ENST00000527797 NRGNQ92686 78 aa17.29■□□□□ 0.36
VPS28-208ENST00000527797 AGMATQ9BSE5 352 aa17.29■□□□□ 0.36
VPS28-208ENST00000527797 SSBP3Q9BWW4 388 aaPredicted RBP17.29■□□□□ 0.36
VPS28-208ENST00000527797 CHIAQ9BZP6 476 aa17.29■□□□□ 0.36
VPS28-208ENST00000527797 BPESC1Q9GZL8 116 aa17.29■□□□□ 0.36
VPS28-208ENST00000527797 PPIAL4CA0A0B4J2A2 164 aa17.29■□□□□ 0.36
VPS28-208ENST00000527797 OR2A4O95047 310 aa17.29■□□□□ 0.36
VPS28-208ENST00000527797 IGHV3-7P01780 117 aa17.29■□□□□ 0.36
VPS28-208ENST00000527797 PPIAL4GP0DN37 164 aa17.29■□□□□ 0.36
VPS28-208ENST00000527797 F2RP25116 425 aa17.29■□□□□ 0.36
VPS28-208ENST00000527797 ZNF134P52741 427 aa17.29■□□□□ 0.36
VPS28-208ENST00000527797 C11orf91Q3C1V1 193 aa17.29■□□□□ 0.36
VPS28-208ENST00000527797 OR5M8Q8NGP6 311 aa17.29■□□□□ 0.36
VPS28-208ENST00000527797 LEAP2Q969E1 77 aa17.29■□□□□ 0.36
VPS28-208ENST00000527797 PSMG3-AS1Q96PY0 264 aa17.29■□□□□ 0.36
VPS28-208ENST00000527797 OR2A7Q96R45 310 aa17.29■□□□□ 0.36
VPS28-208ENST00000527797 TP53RKQ96S44 253 aa17.29■□□□□ 0.36
VPS28-208ENST00000527797 GPHA2Q96T91 129 aa17.29■□□□□ 0.36
VPS28-208ENST00000527797 RAB18Q9NP72 206 aa17.29■□□□□ 0.36
VPS28-208ENST00000527797 USF3Q68DE3 2245 aa17.28■□□□□ 0.36
VPS28-208ENST00000527797 B3GALNT1O75752 331 aa17.28■□□□□ 0.36
VPS28-208ENST00000527797 GIPP09681 153 aaPredicted RBP17.28■□□□□ 0.36
VPS28-208ENST00000527797 PAX1P15863 534 aa17.28■□□□□ 0.36
VPS28-208ENST00000527797 GPR12P47775 334 aa17.28■□□□□ 0.36
VPS28-208ENST00000527797 H2BFSP57053 126 aa17.28■□□□□ 0.36
VPS28-208ENST00000527797 ERVFRD-1P60508 538 aa17.28■□□□□ 0.36
VPS28-208ENST00000527797 LIAT1Q6ZQX7 453 aa17.28■□□□□ 0.36
VPS28-208ENST00000527797 LGI3Q8N145 548 aa17.28■□□□□ 0.36
VPS28-208ENST00000527797 GLYATL2Q8WU03 294 aa17.28■□□□□ 0.36
VPS28-208ENST00000527797 FAM168AQ92567 244 aa17.28■□□□□ 0.36
VPS28-208ENST00000527797 ABHD14BQ96IU4 210 aa17.28■□□□□ 0.36
VPS28-208ENST00000527797 ABHD14AQ9BUJ0 271 aa17.28■□□□□ 0.36
VPS28-208ENST00000527797 RNF212BA8MTL3 300 aa17.27■□□□□ 0.36
VPS28-208ENST00000527797 C17orf98A8MV24 154 aa17.27■□□□□ 0.36
VPS28-208ENST00000527797 NDUFS8O00217 210 aa17.27■□□□□ 0.36
VPS28-208ENST00000527797 CCSO14618 274 aa17.27■□□□□ 0.36
VPS28-208ENST00000527797 SRPXP78539 464 aa17.27■□□□□ 0.36
VPS28-208ENST00000527797 ZFP69Q49AA0 526 aa17.27■□□□□ 0.36
VPS28-208ENST00000527797 CT45A1Q5HYN5 189 aa17.27■□□□□ 0.36
VPS28-208ENST00000527797 UTF1Q5T230 341 aa17.27■□□□□ 0.36
VPS28-208ENST00000527797 DCAF12L2Q5VW00 463 aa17.27■□□□□ 0.36
VPS28-208ENST00000527797 ZNF439Q8NDP4 499 aa17.27■□□□□ 0.36
VPS28-208ENST00000527797 LY6G5BQ8NDX9 201 aa17.27■□□□□ 0.36
VPS28-208ENST00000527797 OR51H1Q8NH63 302 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 105.1 ms