RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 ACTBP60709 375 aa6.67□□□□□ -1.34
SHKBP1-220ENST00000599716 TMED1Q13445 227 aa6.67□□□□□ -1.34
SHKBP1-220ENST00000599716 LSAMPQ13449 338 aa6.67□□□□□ -1.34
SHKBP1-220ENST00000599716 GALEQ14376 348 aa6.67□□□□□ -1.34
SHKBP1-220ENST00000599716 SLC22A6Q4U2R8 563 aa6.67□□□□□ -1.34
SHKBP1-220ENST00000599716 FAM27D1Q5T7N8 215 aa6.67□□□□□ -1.34
SHKBP1-220ENST00000599716 C1orf146Q5VVC0 180 aa6.67□□□□□ -1.34
SHKBP1-220ENST00000599716 ZNF529Q6P280 563 aa6.67□□□□□ -1.34
SHKBP1-220ENST00000599716 TMEM65Q6PI78 240 aa6.67□□□□□ -1.34
SHKBP1-220ENST00000599716 ASCL4Q6XD76 172 aa6.67□□□□□ -1.34
SHKBP1-220ENST00000599716 ZNF497Q6ZNH5 498 aa6.67□□□□□ -1.34
SHKBP1-220ENST00000599716 SLC16A12Q6ZSM3 486 aa6.67□□□□□ -1.34
SHKBP1-220ENST00000599716 SLC25A48Q6ZT89 311 aaKnown RBP6.67□□□□□ -1.34
SHKBP1-220ENST00000599716 LINC00311Q8N616 119 aa6.67□□□□□ -1.34
SHKBP1-220ENST00000599716 OR52L2PQ8NGH6 319 aa6.67□□□□□ -1.34
SHKBP1-220ENST00000599716 GATAD1Q8WUU5 269 aa6.67□□□□□ -1.34
SHKBP1-220ENST00000599716 PYDC1Q8WXC3 89 aa6.67□□□□□ -1.34
SHKBP1-220ENST00000599716 UBE2E2Q96LR5 201 aa6.67□□□□□ -1.34
SHKBP1-220ENST00000599716 FAM103A1Q9BTL3 118 aaKnown RBP6.67□□□□□ -1.34
SHKBP1-220ENST00000599716 JAM3Q9BX67 310 aa6.67□□□□□ -1.34
SHKBP1-220ENST00000599716 ANKRD60Q9BZ19 345 aa6.67□□□□□ -1.34
SHKBP1-220ENST00000599716 METTL9Q9H1A3 318 aa6.67□□□□□ -1.34
SHKBP1-220ENST00000599716 ERVK13-1Q9NX77 482 aa6.67□□□□□ -1.34
SHKBP1-220ENST00000599716 KIAA1456Q9P272 454 aa6.67□□□□□ -1.34
SHKBP1-220ENST00000599716 SIRT4Q9Y6E7 314 aaPredicted RBP6.67□□□□□ -1.34
SHKBP1-220ENST00000599716 DMBT1Q9UGM3 2413 aaPredicted RBP6.67□□□□□ -1.34
SHKBP1-220ENST00000599716 TRAV41A0A0B4J266 112 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 A0A1W2PN81 502 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 A0A1W2PPK0 400 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 UBE2QL1A1L167 161 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 TMEM212A6NML5 194 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 IGLV1-40P01703 118 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 CSTBP04080 98 aaKnown RBP6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 ALPLP05186 524 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 GABRB1P18505 474 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 IL3RAP26951 378 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 ZNF93P35789 620 aaPredicted RBP6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 CHRNA7P36544 502 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 KCNJ3P48549 501 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 SNRPGP62308 76 aaKnown RBP6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 DEFA5Q01523 94 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 PAX5Q02548 391 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 LRRC36Q1X8D7 754 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 OR2G6Q5TZ20 316 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 GLDNQ6ZMI3 551 aaPredicted RBP6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 ODF3L1Q8IXM7 274 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 ZFP41Q8N8Y5 198 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 OR52M1Q8NGK5 317 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 OR52I1Q8NGK6 324 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 TMEM106AQ96A25 262 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 CENPNQ96H22 339 aaPredicted RBP6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 MS4A10Q96PG2 267 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 CITED4Q96RK1 184 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 OR51J1Q9H342 316 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 BANF2Q9H503 90 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 ZMAT4Q9H898 229 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 EDA2RQ9HAV5 297 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 ETAA1Q9NY74 926 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 ENOPH1Q9UHY7 261 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 TRAPPC2LQ9UL33 140 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 GAB2Q9UQC2 676 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 KMT2AQ03164 3969 aa6.66□□□□□ -1.34
SHKBP1-220ENST00000599716 TRAV8-7A0A075B6U6 113 aa6.65□□□□□ -1.34
SHKBP1-220ENST00000599716 FAM90A10PA6NDY2 464 aa6.65□□□□□ -1.34
SHKBP1-220ENST00000599716 LINC01619G3V211 115 aa6.65□□□□□ -1.34
SHKBP1-220ENST00000599716 FCN1O00602 326 aa6.65□□□□□ -1.34
SHKBP1-220ENST00000599716 ORC5O43913 435 aa6.65□□□□□ -1.34
SHKBP1-220ENST00000599716 LALBAP00709 142 aa6.65□□□□□ -1.34
SHKBP1-220ENST00000599716 IGHV4-30-4P0DP06 118 aa6.65□□□□□ -1.34
SHKBP1-220ENST00000599716 ZNF137PP52743 207 aa6.65□□□□□ -1.34
SHKBP1-220ENST00000599716 GBX2P52951 348 aaPredicted RBP6.65□□□□□ -1.34
SHKBP1-220ENST00000599716 RUNX1Q01196 453 aa6.65□□□□□ -1.34
SHKBP1-220ENST00000599716 SMN1Q16637 294 aaKnown RBP6.65□□□□□ -1.34
SHKBP1-220ENST00000599716 ZNF429Q86V71 674 aa6.65□□□□□ -1.34
SHKBP1-220ENST00000599716 Q8N1Y9 231 aa6.65□□□□□ -1.34
SHKBP1-220ENST00000599716 SYS1Q8N2H4 156 aa6.65□□□□□ -1.34
SHKBP1-220ENST00000599716 OR8H1Q8NGG4 311 aa6.65□□□□□ -1.34
SHKBP1-220ENST00000599716 ABHD5Q8WTS1 349 aa6.65□□□□□ -1.34
SHKBP1-220ENST00000599716 TRUB1Q8WWH5 349 aaKnown RBP6.65□□□□□ -1.34
SHKBP1-220ENST00000599716 MUL1Q969V5 352 aa6.65□□□□□ -1.34
SHKBP1-220ENST00000599716 CLCC1Q96S66 551 aa6.65□□□□□ -1.34
SHKBP1-220ENST00000599716 ZNF184Q99676 751 aaPredicted RBP6.65□□□□□ -1.34
SHKBP1-220ENST00000599716 NABP2Q9BQ15 211 aa6.65□□□□□ -1.34
SHKBP1-220ENST00000599716 ZNF251Q9BRH9 671 aa6.65□□□□□ -1.34
SHKBP1-220ENST00000599716 RSRP1Q9BUV0 290 aa6.65□□□□□ -1.34
SHKBP1-220ENST00000599716 TOLLIPQ9H0E2 274 aa6.65□□□□□ -1.34
SHKBP1-220ENST00000599716 FBXL15Q9H469 300 aa6.65□□□□□ -1.34
SHKBP1-220ENST00000599716 RETNQ9HD89 108 aa6.65□□□□□ -1.34
SHKBP1-220ENST00000599716 TPSG1Q9NRR2 321 aa6.65□□□□□ -1.34
SHKBP1-220ENST00000599716 PEX16Q9Y5Y5 336 aa6.65□□□□□ -1.34
SHKBP1-220ENST00000599716 SAA2-SAA4A0A096LPE2 208 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 PNMA8CA0A1B0GUJ8 204 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 NBR2O15453 112 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 SPINT2O43291 252 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 BAG2O95816 211 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 HLA-DRB1P01911 266 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 LIMS3P0CW19 117 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 LIMS4P0CW20 117 aa6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 SAA2P0DJI9 122 aaPredicted RBP6.64□□□□□ -1.35
SHKBP1-220ENST00000599716 OR5H8P0DN80 308 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms