RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 CYB5R3P00387 301 aaPredicted RBP1.41□□□□□ -2.18
CD44-239ENST00000639002 OXTP01178 125 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 MT-ND4P03905 459 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 CD74P04233 296 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 TCRBP04435 133 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 HIST1H1EP10412 219 aaKnown RBP1.41□□□□□ -2.18
CD44-239ENST00000639002 G0S2P27469 103 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 RPL12P30050 165 aaKnown RBP1.41□□□□□ -2.18
CD44-239ENST00000639002 GCLMP48507 274 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 LSM6P62312 80 aaKnown RBP1.41□□□□□ -2.18
CD44-239ENST00000639002 RPL19P84098 196 aaKnown RBP1.41□□□□□ -2.18
CD44-239ENST00000639002 FAM3AP98173 230 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 PRDX1Q06830 199 aaKnown RBP1.41□□□□□ -2.18
CD44-239ENST00000639002 BAXQ07812 192 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 ADIGQ0VDE8 80 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 POU6F1Q14863 301 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 PMVKQ15126 192 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 RBMY1FQ15415 496 aaKnown RBP1.41□□□□□ -2.18
CD44-239ENST00000639002 BATFQ16520 125 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 HIST2H3PS2Q5TEC6 136 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 TRIQKQ629K1 86 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 STEAP4Q687X5 459 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 GUSBP11Q6P575 273 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 TMEM205Q6UW68 189 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 CLEC19AQ6UXS0 136 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 DGAT2L6Q6ZPD8 337 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 Q6ZSR6 202 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 FAM183BPQ6ZVS7 135 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 FAM231DQ6ZW35 169 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 FAM19A5Q7Z5A7 132 aaPredicted RBP1.41□□□□□ -2.18
CD44-239ENST00000639002 NIT1Q86X76 327 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 CPNE9Q8IYJ1 553 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 GAPTQ8N292 157 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 TBC1D19Q8N5T2 526 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 PXT1Q8NFP0 134 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 CIRBP-AS1Q8TBR5 109 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 RXFP4Q8TDU9 374 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 PYDC1Q8WXC3 89 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 SNF8Q96H20 258 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 SMIM8Q96KF7 97 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 MBOAT7Q96N66 472 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 C1orf50Q9BV19 199 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 GGTLC1Q9BX51 225 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 SUCNR1Q9BXA5 334 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 MRPL20Q9BYC9 149 aaKnown RBP1.41□□□□□ -2.18
CD44-239ENST00000639002 SLC25A31Q9H0C2 315 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 C8orf4Q9NR00 106 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 HEBP1Q9NRV9 189 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 TMEM100Q9NV29 134 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 GID8Q9NWU2 228 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 DDIT4Q9NX09 232 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 C21orf62Q9NYP8 219 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 GLTPQ9NZD2 209 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 PRO0628Q9UI54 55 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 TP53TG1Q9Y2A0 90 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 ZNF257Q9Y2Q1 563 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 ENPP4Q9Y6X5 453 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 ROCK1Q13464 1354 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 SNAPC4Q5SXM2 1469 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 CAMTA1Q9Y6Y1 1673 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 FHAD1B1AJZ9 1412 aa1.4□□□□□ -2.18
CD44-239ENST00000639002 RIMS2Q9UQ26 1411 aa1.4□□□□□ -2.18
CD44-239ENST00000639002 TENM1Q9UKZ4 2725 aa1.4□□□□□ -2.18
CD44-239ENST00000639002 C2orf16Q68DN1 1984 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 NACADO15069 1562 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 TEX50A0A1B0GTY4 177 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 GNG14A0A1W2PPG7 69 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 RBFOX3A6NFN3 312 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 OR5H1A6NKK0 313 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 KRBOX1C9JBD0 128 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 TMEM238C9JI98 176 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 K7EPK0 472 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 KPNA3O00505 521 aaPredicted RBP1.4□□□□□ -2.19
CD44-239ENST00000639002 PSPHP1O15172 72 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 SOCS1O15524 211 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 OR2B3O76000 313 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 IGHV3-11P01762 117 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 LINC00614P0C842 121 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 SPNP16150 400 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 ALOX5APP20292 161 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 TAC1P20366 129 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 PRTN3P24158 256 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 CXCR1P25024 350 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 TSPOP30536 169 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 AGTR1P30556 359 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 CCR7P32248 378 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 PRSS3P35030 304 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 ACOT2P49753 483 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 RAB4BP61018 213 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 ERVS71-1P61550 626 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 SLC35A2P78381 396 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 PRR3P79522 188 aaKnown RBP1.4□□□□□ -2.19
CD44-239ENST00000639002 GTF2BQ00403 316 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 SMAGPQ0VAQ4 97 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 FUT5Q11128 374 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 PNOCQ13519 176 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 PPP1R1AQ13522 171 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 PAFAH1B3Q15102 231 aaKnown RBP1.4□□□□□ -2.19
CD44-239ENST00000639002 CEACAM16Q2WEN9 425 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 UBE2NLQ5JXB2 153 aa1.4□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 126 ms