RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 LRBAP50851 2863 aa17.71■□□□□ 0.43
PTPRF-207ENST00000436724 CFAP46Q8IYW2 2715 aa17.71■□□□□ 0.43
PTPRF-207ENST00000436724 IGSF10Q6WRI0 2623 aa17.71■□□□□ 0.43
PTPRF-207ENST00000436724 IGKV1D-17A0A075B6S4 117 aa17.71■□□□□ 0.43
PTPRF-207ENST00000436724 CFHR2P36980 270 aa17.71■□□□□ 0.43
PTPRF-207ENST00000436724 TPRX1Q8N7U7 411 aa17.71■□□□□ 0.43
PTPRF-207ENST00000436724 SREK1IP1Q8N9Q2 155 aaPredicted RBP17.71■□□□□ 0.43
PTPRF-207ENST00000436724 SHARPINQ9H0F6 387 aa17.71■□□□□ 0.43
PTPRF-207ENST00000436724 SLC2A9Q9NRM0 540 aa17.71■□□□□ 0.43
PTPRF-207ENST00000436724 RASL12Q9NYN1 266 aa17.71■□□□□ 0.43
PTPRF-207ENST00000436724 DNAJB11Q9UBS4 358 aa17.71■□□□□ 0.43
PTPRF-207ENST00000436724 NDRG3Q9UGV2 375 aa17.71■□□□□ 0.43
PTPRF-207ENST00000436724 ZDHHC8Q9ULC8 765 aa17.71■□□□□ 0.43
PTPRF-207ENST00000436724 WIPI2Q9Y4P8 454 aa17.71■□□□□ 0.43
PTPRF-207ENST00000436724 IGKV1D-13A0A0B4J2D9 117 aa17.7■□□□□ 0.42
PTPRF-207ENST00000436724 TEX13DA0A0J9YY54 714 aaPredicted RBP17.7■□□□□ 0.42
PTPRF-207ENST00000436724 MEX3AA1L020 520 aaKnown RBP17.7■□□□□ 0.42
PTPRF-207ENST00000436724 E7EQL1 145 aa17.7■□□□□ 0.42
PTPRF-207ENST00000436724 BCL2L11O43521 198 aa17.7■□□□□ 0.42
PTPRF-207ENST00000436724 ADAP1O75689 374 aa17.7■□□□□ 0.42
PTPRF-207ENST00000436724 IGKV1-13P0DP09 117 aa17.7■□□□□ 0.42
PTPRF-207ENST00000436724 PRDX2P32119 198 aa17.7■□□□□ 0.42
PTPRF-207ENST00000436724 GATA4P43694 442 aa17.7■□□□□ 0.42
PTPRF-207ENST00000436724 OR3A1P47881 315 aa17.7■□□□□ 0.42
PTPRF-207ENST00000436724 ABCA11PQ4W5N1 156 aa17.7■□□□□ 0.42
PTPRF-207ENST00000436724 EIF4E3Q8N5X7 224 aaKnown RBP17.7■□□□□ 0.42
PTPRF-207ENST00000436724 OR10Z1Q8NGY1 313 aa17.7■□□□□ 0.42
PTPRF-207ENST00000436724 COQ2Q96H96 371 aa17.7■□□□□ 0.42
PTPRF-207ENST00000436724 OR1A1Q9P1Q5 309 aa17.7■□□□□ 0.42
PTPRF-207ENST00000436724 KANTRA0A1W2PQU2 76 aa17.7■□□□□ 0.42
PTPRF-207ENST00000436724 CRYM-AS1A6NIL9 109 aa17.7■□□□□ 0.42
PTPRF-207ENST00000436724 PLAUP00749 431 aa17.7■□□□□ 0.42
PTPRF-207ENST00000436724 LHBP01229 141 aa17.7■□□□□ 0.42
PTPRF-207ENST00000436724 FAM74A1Q5RGS3 127 aa17.7■□□□□ 0.42
PTPRF-207ENST00000436724 STPG2Q8N412 459 aa17.7■□□□□ 0.42
PTPRF-207ENST00000436724 OR4A4PQ8NGN8 299 aa17.7■□□□□ 0.42
PTPRF-207ENST00000436724 SECTM1Q8WVN6 248 aa17.7■□□□□ 0.42
PTPRF-207ENST00000436724 DCAF16Q9NXF7 216 aa17.7■□□□□ 0.42
PTPRF-207ENST00000436724 ERRFI1Q9UJM3 462 aaPredicted RBP17.7■□□□□ 0.42
PTPRF-207ENST00000436724 MPTX1A8MV57 137 aa17.69■□□□□ 0.42
PTPRF-207ENST00000436724 KRBOX1C9JBD0 128 aa17.69■□□□□ 0.42
PTPRF-207ENST00000436724 CYB5R3P00387 301 aaPredicted RBP17.69■□□□□ 0.42
PTPRF-207ENST00000436724 SERPINF1P36955 418 aa17.69■□□□□ 0.42
PTPRF-207ENST00000436724 UQCRFS1P47985 274 aa17.69■□□□□ 0.42
PTPRF-207ENST00000436724 LUMP51884 338 aaPredicted RBP17.69■□□□□ 0.42
PTPRF-207ENST00000436724 SP6Q3SY56 376 aa17.69■□□□□ 0.42
PTPRF-207ENST00000436724 SGPP2Q8IWX5 399 aa17.69■□□□□ 0.42
PTPRF-207ENST00000436724 RTN4IP1Q8WWV3 396 aaPredicted RBP17.69■□□□□ 0.42
PTPRF-207ENST00000436724 MBNL3Q9NUK0 354 aaKnown RBP17.69■□□□□ 0.42
PTPRF-207ENST00000436724 SPTBN1Q01082 2364 aaKnown RBP17.69■□□□□ 0.42
PTPRF-207ENST00000436724 C13orf42A0A1B0GVH6 325 aa17.69■□□□□ 0.42
PTPRF-207ENST00000436724 H7C1Q1 480 aa17.69■□□□□ 0.42
PTPRF-207ENST00000436724 IFNL4K9M1U5 179 aa17.69■□□□□ 0.42
PTPRF-207ENST00000436724 SIAH2O43255 324 aa17.69■□□□□ 0.42
PTPRF-207ENST00000436724 TUSC2O75896 110 aa17.69■□□□□ 0.42
PTPRF-207ENST00000436724 DIRAS3O95661 229 aa17.69■□□□□ 0.42
PTPRF-207ENST00000436724 IFNA2P01563 188 aa17.69■□□□□ 0.42
PTPRF-207ENST00000436724 GNRHRP30968 328 aa17.69■□□□□ 0.42
PTPRF-207ENST00000436724 CD80P33681 288 aa17.69■□□□□ 0.42
PTPRF-207ENST00000436724 GABRA2P47869 451 aa17.69■□□□□ 0.42
PTPRF-207ENST00000436724 LDLRAD3Q86YD5 345 aa17.69■□□□□ 0.42
PTPRF-207ENST00000436724 OR10J5Q8NHC4 309 aa17.69■□□□□ 0.42
PTPRF-207ENST00000436724 THAP6Q8TBB0 222 aa17.69■□□□□ 0.42
PTPRF-207ENST00000436724 GPHA2Q96T91 129 aa17.69■□□□□ 0.42
PTPRF-207ENST00000436724 TAF9BQ9HBM6 251 aa17.69■□□□□ 0.42
PTPRF-207ENST00000436724 KCNJ16Q9NPI9 418 aa17.69■□□□□ 0.42
PTPRF-207ENST00000436724 TRBV6-7A0A0A0MS04 114 aa17.68■□□□□ 0.42
PTPRF-207ENST00000436724 C17orf100A8MU93 164 aa17.68■□□□□ 0.42
PTPRF-207ENST00000436724 CTXN2P0C2S0 81 aa17.68■□□□□ 0.42
PTPRF-207ENST00000436724 TNFSF4P23510 183 aa17.68■□□□□ 0.42
PTPRF-207ENST00000436724 UCP3P55916 312 aa17.68■□□□□ 0.42
PTPRF-207ENST00000436724 TLE1Q04724 770 aa17.68■□□□□ 0.42
PTPRF-207ENST00000436724 RSRP1Q9BUV0 290 aa17.68■□□□□ 0.42
PTPRF-207ENST00000436724 MBD2Q9UBB5 411 aa17.68■□□□□ 0.42
PTPRF-207ENST00000436724 PCDHB10Q9UN67 800 aa17.68■□□□□ 0.42
PTPRF-207ENST00000436724 DYSFO75923 2080 aa17.68■□□□□ 0.42
PTPRF-207ENST00000436724 DSCAMO60469 2012 aa17.68■□□□□ 0.42
PTPRF-207ENST00000436724 TMEM30CPA0ZSE6 113 aa17.67■□□□□ 0.42
PTPRF-207ENST00000436724 GLIPR1P48060 266 aa17.67■□□□□ 0.42
PTPRF-207ENST00000436724 MOB1BQ7L9L4 216 aa17.67■□□□□ 0.42
PTPRF-207ENST00000436724 CABLES2Q9BTV7 478 aa17.67■□□□□ 0.42
PTPRF-207ENST00000436724 BARX1Q9HBU1 254 aaPredicted RBP17.67■□□□□ 0.42
PTPRF-207ENST00000436724 PPP1R3CQ9UQK1 317 aa17.67■□□□□ 0.42
PTPRF-207ENST00000436724 USP24Q9UPU5 2620 aa17.67■□□□□ 0.42
PTPRF-207ENST00000436724 C5orf51A6NDU8 294 aa17.67■□□□□ 0.42
PTPRF-207ENST00000436724 KCNAB3O43448 404 aa17.67■□□□□ 0.42
PTPRF-207ENST00000436724 ZNF737O75373 536 aa17.67■□□□□ 0.42
PTPRF-207ENST00000436724 CD3EP07766 207 aa17.67■□□□□ 0.42
PTPRF-207ENST00000436724 ZNRF1Q8ND25 227 aa17.67■□□□□ 0.42
PTPRF-207ENST00000436724 PIK3IP1Q96FE7 263 aa17.67■□□□□ 0.42
PTPRF-207ENST00000436724 ZNF471Q9BX82 626 aaPredicted RBP17.67■□□□□ 0.42
PTPRF-207ENST00000436724 RNF7Q9UBF6 113 aa17.67■□□□□ 0.42
PTPRF-207ENST00000436724 ABCA4P78363 2273 aa17.67■□□□□ 0.42
PTPRF-207ENST00000436724 OR5AC1P0C628 307 aa17.66■□□□□ 0.42
PTPRF-207ENST00000436724 PSMB6P28072 239 aa17.66■□□□□ 0.42
PTPRF-207ENST00000436724 KCNJ3P48549 501 aa17.66■□□□□ 0.42
PTPRF-207ENST00000436724 SMUG1Q53HV7 270 aa17.66■□□□□ 0.42
PTPRF-207ENST00000436724 KRBOX4Q5JUW0 171 aa17.66■□□□□ 0.42
PTPRF-207ENST00000436724 ZNF818PQ6ZRF7 136 aa17.66■□□□□ 0.42
PTPRF-207ENST00000436724 RNF126Q9BV68 326 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms