RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 CTNNBIP1Q9NSA3 81 aaPredicted RBP1.43□□□□□ -2.18
CD44-239ENST00000639002 TAS2R13Q9NYV9 303 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 MTFP1Q9UDX5 166 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 NDRG2Q9UN36 371 aaKnown RBP1.43□□□□□ -2.18
CD44-239ENST00000639002 FARSAQ9Y285 508 aaKnown RBP1.43□□□□□ -2.18
CD44-239ENST00000639002 ZNF337Q9Y3M9 751 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 LRRC42Q9Y546 428 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 ARL5AQ9Y689 179 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 WDFY4Q6ZS81 3184 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 ANKHD1Q8IWZ3 2542 aaKnown RBP1.43□□□□□ -2.18
CD44-239ENST00000639002 LAMA2P24043 3122 aaKnown RBP1.43□□□□□ -2.18
CD44-239ENST00000639002 PALLDQ8WX93 1383 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 TMEM131Q92545 1883 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 TNRC18O15417 2968 aaPredicted RBP1.43□□□□□ -2.18
CD44-239ENST00000639002 SORL1Q92673 2214 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 SETBP1Q9Y6X0 1596 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 ASH1LQ9NR48 2969 aaKnown RBP1.42□□□□□ -2.18
CD44-239ENST00000639002 SMIM26A0A096LP01 95 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP1.42□□□□□ -2.18
CD44-239ENST00000639002 TRAV8-2A0A0B4J237 113 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 TRAV8-6A0A0B4J262 113 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 IGHV1-69DA0A0B4J2H0 117 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 TINCRA0A1B0GVN0 87 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 C21orf140B9A014 251 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 F5H5T6 163 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 LINC01619G3V211 115 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 H0YJX3 145 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 J3QT63 122 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 CXCR6O00574 342 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 AZIN1O14977 448 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 NDUFS5O43920 106 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 FABP1P07148 127 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 OR4E1P0C645 316 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 RPS12P25398 132 aaKnown RBP1.42□□□□□ -2.18
CD44-239ENST00000639002 PAX6P26367 422 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 APLNRP35414 380 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 MYCNOSP40205 109 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 CD79BP40259 229 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 CAPZBP47756 277 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 GNG10P50151 68 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 PSMD7P51665 324 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 SLC18A1P54219 525 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 TCL1AP56279 114 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 CLDN12P56749 244 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 OR10A3P58181 314 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 POLR2GP62487 172 aaKnown RBP eCLIP1.42□□□□□ -2.18
CD44-239ENST00000639002 HBG1P69891 147 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 HBG2P69892 147 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 INCA1Q0VD86 236 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 HIST3H3Q16695 136 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 CLEC12AQ5QGZ9 265 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 EPGNQ6UW88 154 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 SPNS3Q6ZMD2 512 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 RTL4Q6ZR62 310 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 RASSF6Q6ZTQ3 369 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 TMED4Q7Z7H5 227 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 CCNYL1Q8N7R7 359 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 SLC26A10Q8NG04 563 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 OR10AD1Q8NGE0 317 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 OR4P4Q8NGL7 312 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 OR5M1Q8NGP8 315 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 OR1J4Q8NGS1 313 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 MFSD8Q8NHS3 518 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 ZNF420Q8TAQ5 688 aaPredicted RBP1.42□□□□□ -2.18
CD44-239ENST00000639002 FAM172AQ8WUF8 416 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 DGCR14Q96DF8 476 aaKnown RBP1.42□□□□□ -2.18
CD44-239ENST00000639002 IMP4Q96G21 291 aaKnown RBP1.42□□□□□ -2.18
CD44-239ENST00000639002 MRPL48Q96GC5 212 aaKnown RBP1.42□□□□□ -2.18
CD44-239ENST00000639002 BTF3L4Q96K17 158 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 PGLYRP3Q96LB9 341 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 PPP1R36Q96LQ0 422 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 QKIQ96PU8 341 aaKnown RBP eCLIP1.42□□□□□ -2.18
CD44-239ENST00000639002 SFXN3Q9BWM7 321 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 CDCA4Q9BXL8 241 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 SLC19A3Q9BZV2 496 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 TSGA10Q9BZW7 698 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 SLC22A4Q9H015 551 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 MAP1LC3AQ9H492 121 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 RRAGDQ9NQL2 400 aaPredicted RBP1.42□□□□□ -2.18
CD44-239ENST00000639002 RBM22Q9NW64 420 aaKnown RBP eCLIP1.42□□□□□ -2.18
CD44-239ENST00000639002 DMAC2Q9NW81 257 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 PAQR5Q9NXK6 330 aaPredicted RBP1.42□□□□□ -2.18
CD44-239ENST00000639002 SETD1AO15047 1707 aaKnown RBP1.42□□□□□ -2.18
CD44-239ENST00000639002 ANKRD30AQ9BXX3 1397 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 VWA8A3KMH1 1905 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 MUC2Q02817 5179 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 ZFHX4Q86UP3 3567 aa1.42□□□□□ -2.18
CD44-239ENST00000639002 ZBED9Q6R2W3 1325 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 NRCAMQ92823 1304 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 ADGRL3Q9HAR2 1447 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 A0A0J9YXV3 536 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 VPS37CA5D8V6 355 aaPredicted RBP1.41□□□□□ -2.18
CD44-239ENST00000639002 C5orf63A6NC05 138 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 METTL15A6NJ78 407 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 CEACAM18A8MTB9 384 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 H0YJW9 148 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 PSMD12O00232 456 aaPredicted RBP1.41□□□□□ -2.18
CD44-239ENST00000639002 MANBAO00462 879 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 TAAR5O14804 337 aa1.41□□□□□ -2.18
CD44-239ENST00000639002 PLIN3O60664 434 aa1.41□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms