RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 ISG15P05161 165 aa6.73□□□□□ -1.33
SHKBP1-220ENST00000599716 C21orf33P30042 268 aaPredicted RBP6.73□□□□□ -1.33
SHKBP1-220ENST00000599716 SOX2P48431 317 aa6.73□□□□□ -1.33
SHKBP1-220ENST00000599716 GNB1P62873 340 aa6.73□□□□□ -1.33
SHKBP1-220ENST00000599716 CFHR3Q02985 330 aa6.73□□□□□ -1.33
SHKBP1-220ENST00000599716 ATP6AP1Q15904 470 aa6.73□□□□□ -1.33
SHKBP1-220ENST00000599716 ZNF691Q5VV52 312 aa6.73□□□□□ -1.33
SHKBP1-220ENST00000599716 ADAMTSL5Q6ZMM2 481 aa6.73□□□□□ -1.33
SHKBP1-220ENST00000599716 LHFPL3Q86UP9 236 aa6.73□□□□□ -1.33
SHKBP1-220ENST00000599716 TGIF2LXQ8IUE1 241 aa6.73□□□□□ -1.33
SHKBP1-220ENST00000599716 OR8H3Q8N146 312 aa6.73□□□□□ -1.33
SHKBP1-220ENST00000599716 ZNF565Q8N9K5 539 aa6.73□□□□□ -1.33
SHKBP1-220ENST00000599716 SUMF2Q8NBJ7 301 aa6.73□□□□□ -1.33
SHKBP1-220ENST00000599716 CHST4Q8NCG5 386 aa6.73□□□□□ -1.33
SHKBP1-220ENST00000599716 OR10V1Q8NGI7 309 aa6.73□□□□□ -1.33
SHKBP1-220ENST00000599716 HAVCR2Q8TDQ0 301 aa6.73□□□□□ -1.33
SHKBP1-220ENST00000599716 TNFAIP8L1Q8WVP5 186 aa6.73□□□□□ -1.33
SHKBP1-220ENST00000599716 ORAI1Q96D31 301 aa6.73□□□□□ -1.33
SHKBP1-220ENST00000599716 RITA1Q96K30 269 aa6.73□□□□□ -1.33
SHKBP1-220ENST00000599716 C4orf36Q96KX1 117 aa6.73□□□□□ -1.33
SHKBP1-220ENST00000599716 S1PR3Q99500 378 aa6.73□□□□□ -1.33
SHKBP1-220ENST00000599716 PCDHB16Q9NRJ7 776 aa6.73□□□□□ -1.33
SHKBP1-220ENST00000599716 ZNF256Q9Y2P7 627 aaPredicted RBP6.73□□□□□ -1.33
SHKBP1-220ENST00000599716 C15orf65H3BRN8 121 aa6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 J3QRE1 110 aa6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 SDCBPO00560 298 aaPredicted RBP6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 SULT1B1O43704 296 aa6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 MT-ND2P03891 347 aa6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 GAPDHP04406 335 aaKnown RBP6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 CNTFRP26992 372 aa6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 CDX1P47902 265 aaPredicted RBP6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 SLURP1P55000 103 aa6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 ZNF816Q0VGE8 651 aaPredicted RBP6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 FOXE3Q13461 319 aa6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 FHL3Q13643 280 aa6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 ALKBH1Q13686 389 aaKnown RBP6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 EBI3Q14213 229 aa6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 ZIK1Q3SY52 487 aaPredicted RBP6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 ZDHHC13Q8IUH4 622 aa6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 SAXO1Q8IYX7 474 aa6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 COMMD1Q8N668 190 aa6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 TMEM104Q8NE00 496 aa6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 CCDC54Q8NEL0 328 aa6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 OR2T10Q8NGZ9 312 aa6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 C4orf3Q8WVX3 66 aa6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 RTN4IP1Q8WWV3 396 aaPredicted RBP6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 ARL11Q969Q4 196 aa6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 KCTD7Q96MP8 289 aa6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 PDCD1LG2Q9BQ51 273 aa6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 DPCDQ9BVM2 203 aaPredicted RBP6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 BARHL1Q9BZE3 327 aa6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 GABARAPL1Q9H0R8 117 aa6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 LIN7CQ9NUP9 197 aaKnown RBP6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 TAS2R4Q9NYW5 299 aa6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 OAZ3Q9UMX2 235 aa6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 SMAD5-AS1Q9Y6J3 95 aa6.72□□□□□ -1.33
SHKBP1-220ENST00000599716 TRIM64CA6NLI5 447 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 GEMIN2O14893 280 aaKnown RBP6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 OR7C1O76099 320 aaPredicted RBP6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 ZFPL1O95159 310 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 IGHG4P01861 327 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 FRMD6-AS1P0C7T7 363 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 SPNP16150 400 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 VDAC1P21796 283 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 PSMB8P28062 276 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 CHATP28329 748 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 SLC6A1P30531 599 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 MTNR1BP49286 362 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 GTF2A1P52655 376 aaPredicted RBP6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 ZNF134P52741 427 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 PRR20EP86478 221 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 PRR20CP86479 221 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 PRR20DP86480 221 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 PRR20BP86481 221 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 PRR20AP86496 221 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 KIAA0141Q14154 515 aaPredicted RBP6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 SRSF7Q16629 238 aaKnown RBP eCLIP6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 FDX2Q6P4F2 183 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 IZUMO1Q8IYV9 350 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 PRR18Q8N4B5 295 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 FAM71E2Q8N5Q1 922 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 RNF152Q8N8N0 203 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 Q8NFD4 153 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 OR8J1Q8NGP2 316 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 OR1N2Q8NGR9 330 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 TSEN15Q8WW01 171 aaKnown RBP6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 RGP1Q92546 391 aaPredicted RBP6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 DCUN1D4Q92564 292 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 ST6GALNAC6Q969X2 333 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 LGALS12Q96DT0 336 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 GPER1Q99527 375 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 RASL11BQ9BPW5 248 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 GABARAPL3Q9BY60 117 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 LINC00574Q9H8X3 128 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 AMBNQ9NP70 447 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 ISYNA1Q9NPH2 558 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 ING4Q9UNL4 249 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 ST3GAL6Q9Y274 331 aa6.71□□□□□ -1.34
SHKBP1-220ENST00000599716 ATP6V0E1O15342 81 aa6.7□□□□□ -1.34
SHKBP1-220ENST00000599716 ATP8B1O43520 1251 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms