RNA–Protein interactions for RNA: ENST00000392449.4

PTPRK-208, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 1,456 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-208ENST00000392449 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.13□□□□□ -0.31
PTPRK-208ENST00000392449 ZNF281Q9Y2X9 895 aa13.13□□□□□ -0.31
PTPRK-208ENST00000392449 PNMA8CA0A1B0GUJ8 204 aa13.12□□□□□ -0.31
PTPRK-208ENST00000392449 A0A1W2PPK0 400 aa13.12□□□□□ -0.31
PTPRK-208ENST00000392449 LINC01548A6NM66 108 aa13.12□□□□□ -0.31
PTPRK-208ENST00000392449 C15orf65H3BRN8 121 aa13.12□□□□□ -0.31
PTPRK-208ENST00000392449 M0QZK8 103 aa13.12□□□□□ -0.31
PTPRK-208ENST00000392449 HSD17B6O14756 317 aa13.12□□□□□ -0.31
PTPRK-208ENST00000392449 OGG1O15527 345 aa13.12□□□□□ -0.31
PTPRK-208ENST00000392449 CSTBP04080 98 aaKnown RBP13.12□□□□□ -0.31
PTPRK-208ENST00000392449 KRTAP10-11P60412 298 aa13.12□□□□□ -0.31
PTPRK-208ENST00000392449 RPS11P62280 158 aaKnown RBP eCLIP13.12□□□□□ -0.31
PTPRK-208ENST00000392449 DOC2BQ14184 412 aa13.12□□□□□ -0.31
PTPRK-208ENST00000392449 ETV3LQ6ZN32 361 aa13.12□□□□□ -0.31
PTPRK-208ENST00000392449 THNSL2Q86YJ6 484 aa13.12□□□□□ -0.31
PTPRK-208ENST00000392449 C10orf67Q8IYJ2 551 aa13.12□□□□□ -0.31
PTPRK-208ENST00000392449 HAVCR2Q8TDQ0 301 aa13.12□□□□□ -0.31
PTPRK-208ENST00000392449 PCDHB16Q9NRJ7 776 aa13.12□□□□□ -0.31
PTPRK-208ENST00000392449 BABAM2Q9NXR7 383 aa13.12□□□□□ -0.31
PTPRK-208ENST00000392449 DIMT1Q9UNQ2 313 aaKnown RBP13.12□□□□□ -0.31
PTPRK-208ENST00000392449 TRBV5-5A0A0J9YX44 114 aa13.11□□□□□ -0.31
PTPRK-208ENST00000392449 TMEM30CPA0ZSE6 113 aa13.11□□□□□ -0.31
PTPRK-208ENST00000392449 IGFBP3P17936 291 aaPredicted RBP13.11□□□□□ -0.31
PTPRK-208ENST00000392449 HOXD3P31249 432 aaPredicted RBP13.11□□□□□ -0.31
PTPRK-208ENST00000392449 KCNJ3P48549 501 aa13.11□□□□□ -0.31
PTPRK-208ENST00000392449 SLC35A2P78381 396 aa13.11□□□□□ -0.31
PTPRK-208ENST00000392449 RIPK1Q13546 671 aa13.11□□□□□ -0.31
PTPRK-208ENST00000392449 NHLRC3Q5JS37 347 aa13.11□□□□□ -0.31
PTPRK-208ENST00000392449 MOB3BQ86TA1 216 aa13.11□□□□□ -0.31
PTPRK-208ENST00000392449 NEK7Q8TDX7 302 aa13.11□□□□□ -0.31
PTPRK-208ENST00000392449 ARL11Q969Q4 196 aa13.11□□□□□ -0.31
PTPRK-208ENST00000392449 IFT22Q9H7X7 185 aa13.11□□□□□ -0.31
PTPRK-208ENST00000392449 K7EIL1 84 aa13.1□□□□□ -0.31
PTPRK-208ENST00000392449 SDCBPO00560 298 aaPredicted RBP13.1□□□□□ -0.31
PTPRK-208ENST00000392449 SLC31A2O15432 143 aa13.1□□□□□ -0.31
PTPRK-208ENST00000392449 MYL12AP19105 171 aa13.1□□□□□ -0.31
PTPRK-208ENST00000392449 RAB7AP51149 207 aa13.1□□□□□ -0.31
PTPRK-208ENST00000392449 DMKNQ6E0U4 476 aaPredicted RBP13.1□□□□□ -0.31
PTPRK-208ENST00000392449 OR8H3Q8N146 312 aa13.1□□□□□ -0.31
PTPRK-208ENST00000392449 LINC00482Q8N8I6 264 aa13.1□□□□□ -0.31
PTPRK-208ENST00000392449 MUL1Q969V5 352 aa13.1□□□□□ -0.31
PTPRK-208ENST00000392449 PGLYRP3Q96LB9 341 aa13.1□□□□□ -0.31
PTPRK-208ENST00000392449 OR14A2Q96R54 314 aa13.1□□□□□ -0.31
PTPRK-208ENST00000392449 S100A13Q99584 98 aa13.1□□□□□ -0.31
PTPRK-208ENST00000392449 EXOSC1Q9Y3B2 195 aaKnown RBP13.1□□□□□ -0.31
PTPRK-208ENST00000392449 IGHV1-3A0A0C4DH29 117 aa13.1□□□□□ -0.31
PTPRK-208ENST00000392449 WI2-2373I1.2A0A1W2PRP0 233 aa13.1□□□□□ -0.31
PTPRK-208ENST00000392449 SERPINE3A8MV23 424 aa13.1□□□□□ -0.31
PTPRK-208ENST00000392449 CCRL2O00421 344 aa13.1□□□□□ -0.31
PTPRK-208ENST00000392449 MRPL41Q8IXM3 137 aaKnown RBP13.1□□□□□ -0.31
PTPRK-208ENST00000392449 ZNF485Q8NCK3 441 aa13.1□□□□□ -0.31
PTPRK-208ENST00000392449 OR10A7Q8NGE5 316 aa13.1□□□□□ -0.31
PTPRK-208ENST00000392449 RDH12Q96NR8 316 aa13.1□□□□□ -0.31
PTPRK-208ENST00000392449 COL7A1Q02388 2944 aa13.09□□□□□ -0.31
PTPRK-208ENST00000392449 ZNF736B4DX44 427 aaPredicted RBP13.09□□□□□ -0.31
PTPRK-208ENST00000392449 AIPO00170 330 aa13.09□□□□□ -0.31
PTPRK-208ENST00000392449 EBAG9O00559 213 aa13.09□□□□□ -0.31
PTPRK-208ENST00000392449 MT-ND4P03905 459 aa13.09□□□□□ -0.31
PTPRK-208ENST00000392449 VHLP40337 213 aa13.09□□□□□ -0.31
PTPRK-208ENST00000392449 RPL23AP62750 156 aaKnown RBP13.09□□□□□ -0.31
PTPRK-208ENST00000392449 ZNF816Q0VGE8 651 aaPredicted RBP13.09□□□□□ -0.31
PTPRK-208ENST00000392449 MPV17LQ2QL34 196 aa13.09□□□□□ -0.31
PTPRK-208ENST00000392449 Q499Y3 187 aa13.09□□□□□ -0.31
PTPRK-208ENST00000392449 ZNF497Q6ZNH5 498 aa13.09□□□□□ -0.31
PTPRK-208ENST00000392449 C8orf86Q6ZUL3 223 aa13.09□□□□□ -0.31
PTPRK-208ENST00000392449 OR2W3Q7Z3T1 314 aa13.09□□□□□ -0.31
PTPRK-208ENST00000392449 C5orf24Q7Z6I8 188 aa13.09□□□□□ -0.31
PTPRK-208ENST00000392449 JAGN1Q8N5M9 183 aa13.09□□□□□ -0.31
PTPRK-208ENST00000392449 GGHQ92820 318 aa13.09□□□□□ -0.31
PTPRK-208ENST00000392449 TMEM80Q96HE8 168 aa13.09□□□□□ -0.31
PTPRK-208ENST00000392449 RCC1LQ96I51 464 aaKnown RBP13.09□□□□□ -0.31
PTPRK-208ENST00000392449 EAF1Q96JC9 268 aaPredicted RBP13.09□□□□□ -0.31
PTPRK-208ENST00000392449 DUX3Q96PT4 197 aa13.09□□□□□ -0.31
PTPRK-208ENST00000392449 BANF2Q9H503 90 aa13.09□□□□□ -0.31
PTPRK-208ENST00000392449 GFOD1Q9NXC2 390 aa13.09□□□□□ -0.31
PTPRK-208ENST00000392449 MRPS28Q9Y2Q9 187 aaKnown RBP13.09□□□□□ -0.31
PTPRK-208ENST00000392449 NCBP2LA6PVI3 153 aaKnown RBP13.08□□□□□ -0.32
PTPRK-208ENST00000392449 FGF16O43320 207 aa13.08□□□□□ -0.32
PTPRK-208ENST00000392449 MAS1P04201 325 aa13.08□□□□□ -0.32
PTPRK-208ENST00000392449 GNAO1P09471 354 aa13.08□□□□□ -0.32
PTPRK-208ENST00000392449 GTF2F2P13984 249 aa13.08□□□□□ -0.32
PTPRK-208ENST00000392449 GZMHP20718 246 aa13.08□□□□□ -0.32
PTPRK-208ENST00000392449 ADARB1P78563 741 aaKnown RBP13.08□□□□□ -0.32
PTPRK-208ENST00000392449 ST3GAL4Q11206 333 aa13.08□□□□□ -0.32
PTPRK-208ENST00000392449 LAIR2Q6ISS4 152 aa13.08□□□□□ -0.32
PTPRK-208ENST00000392449 GLIPR1L1Q6UWM5 242 aa13.08□□□□□ -0.32
PTPRK-208ENST00000392449 SLC16A12Q6ZSM3 486 aa13.08□□□□□ -0.32
PTPRK-208ENST00000392449 LCNL1Q6ZST4 164 aa13.08□□□□□ -0.32
PTPRK-208ENST00000392449 SLC35E3Q7Z769 313 aa13.08□□□□□ -0.32
PTPRK-208ENST00000392449 LINC00596Q86U02 117 aa13.08□□□□□ -0.32
PTPRK-208ENST00000392449 PRR18Q8N4B5 295 aa13.08□□□□□ -0.32
PTPRK-208ENST00000392449 OR10V1Q8NGI7 309 aa13.08□□□□□ -0.32
PTPRK-208ENST00000392449 OR4K15Q8NH41 348 aa13.08□□□□□ -0.32
PTPRK-208ENST00000392449 PAK1IP1Q9NWT1 392 aaPredicted RBP13.08□□□□□ -0.32
PTPRK-208ENST00000392449 TRBV5-7A0A0A0MS05 114 aa13.07□□□□□ -0.32
PTPRK-208ENST00000392449 IRGMA1A4Y4 181 aa13.07□□□□□ -0.32
PTPRK-208ENST00000392449 NUDT19A8MXV4 375 aa13.07□□□□□ -0.32
PTPRK-208ENST00000392449 C12orf77C9JDV5 145 aa13.07□□□□□ -0.32
PTPRK-208ENST00000392449 IGHG2P01859 326 aa13.07□□□□□ -0.32
PTPRK-208ENST00000392449 GAPDHP04406 335 aaKnown RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms