RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 Q6ZS49 121 aa13.2□□□□□ -0.3
CCDC40-202ENST00000374876 OR5P3Q8WZ94 311 aa13.2□□□□□ -0.3
CCDC40-202ENST00000374876 C18orf12Q96KH6 178 aa13.2□□□□□ -0.3
CCDC40-202ENST00000374876 HS3ST6Q96QI5 342 aa13.2□□□□□ -0.3
CCDC40-202ENST00000374876 MPC1Q9Y5U8 109 aa13.2□□□□□ -0.3
CCDC40-202ENST00000374876 H7C1Q1 480 aa13.2□□□□□ -0.3
CCDC40-202ENST00000374876 HSPB6O14558 160 aa13.2□□□□□ -0.3
CCDC40-202ENST00000374876 DIRAS3O95661 229 aa13.2□□□□□ -0.3
CCDC40-202ENST00000374876 TK1P04183 234 aa13.2□□□□□ -0.3
CCDC40-202ENST00000374876 FAM157CP0CG43 387 aa13.2□□□□□ -0.3
CCDC40-202ENST00000374876 WNT5AP41221 380 aa13.2□□□□□ -0.3
CCDC40-202ENST00000374876 SRSF7Q16629 238 aaKnown RBP eCLIP13.2□□□□□ -0.3
CCDC40-202ENST00000374876 PXDC1Q5TGL8 231 aa13.2□□□□□ -0.3
CCDC40-202ENST00000374876 HAGHLQ6PII5 290 aaPredicted RBP13.2□□□□□ -0.3
CCDC40-202ENST00000374876 GLYATL2Q8WU03 294 aa13.2□□□□□ -0.3
CCDC40-202ENST00000374876 BCL2L2Q92843 193 aaPredicted RBP13.2□□□□□ -0.3
CCDC40-202ENST00000374876 MSI2Q96DH6 328 aaKnown RBP13.2□□□□□ -0.3
CCDC40-202ENST00000374876 LRRC46Q96FV0 321 aa13.2□□□□□ -0.3
CCDC40-202ENST00000374876 Q9N2K0 584 aa13.2□□□□□ -0.3
CCDC40-202ENST00000374876 RCC2Q9P258 522 aaKnown RBP13.2□□□□□ -0.3
CCDC40-202ENST00000374876 IL36RNQ9UBH0 155 aa13.2□□□□□ -0.3
CCDC40-202ENST00000374876 LPAR3Q9UBY5 353 aa13.2□□□□□ -0.3
CCDC40-202ENST00000374876 NUDT19A8MXV4 375 aa13.19□□□□□ -0.3
CCDC40-202ENST00000374876 E5RGE8 158 aa13.19□□□□□ -0.3
CCDC40-202ENST00000374876 BET1O15155 118 aa13.19□□□□□ -0.3
CCDC40-202ENST00000374876 SYNGR1O43759 233 aa13.19□□□□□ -0.3
CCDC40-202ENST00000374876 NAPSAO96009 420 aa13.19□□□□□ -0.3
CCDC40-202ENST00000374876 MBPP02686 304 aaPredicted RBP13.19□□□□□ -0.3
CCDC40-202ENST00000374876 PRKACAP17612 351 aa13.19□□□□□ -0.3
CCDC40-202ENST00000374876 DUSP1P28562 367 aa13.19□□□□□ -0.3
CCDC40-202ENST00000374876 MDP1Q86V88 176 aa13.19□□□□□ -0.3
CCDC40-202ENST00000374876 ZNF573Q86YE8 665 aa13.19□□□□□ -0.3
CCDC40-202ENST00000374876 PLK3Q9H4B4 646 aa13.19□□□□□ -0.3
CCDC40-202ENST00000374876 PLEKHA2Q9HB19 425 aa13.19□□□□□ -0.3
CCDC40-202ENST00000374876 ZFP57Q9NU63 452 aa13.19□□□□□ -0.3
CCDC40-202ENST00000374876 NSG2Q9Y328 171 aa13.19□□□□□ -0.3
CCDC40-202ENST00000374876 OR5B21A6NL26 309 aa13.18□□□□□ -0.3
CCDC40-202ENST00000374876 SIGLEC5O15389 551 aa13.18□□□□□ -0.3
CCDC40-202ENST00000374876 JTBO76095 146 aa13.18□□□□□ -0.3
CCDC40-202ENST00000374876 GNG3P63215 75 aa13.18□□□□□ -0.3
CCDC40-202ENST00000374876 FAM185AQ8N0U4 392 aa13.18□□□□□ -0.3
CCDC40-202ENST00000374876 RNASE6Q93091 150 aaKnown RBP13.18□□□□□ -0.3
CCDC40-202ENST00000374876 SPACA1Q9HBV2 294 aa13.18□□□□□ -0.3
CCDC40-202ENST00000374876 MMP26Q9NRE1 261 aa13.18□□□□□ -0.3
CCDC40-202ENST00000374876 FBXL17Q9UF56 701 aa13.18□□□□□ -0.3
CCDC40-202ENST00000374876 PTPN13Q12923 2485 aa13.18□□□□□ -0.3
CCDC40-202ENST00000374876 KIR2DS1A0A191URI9 304 aa13.18□□□□□ -0.3
CCDC40-202ENST00000374876 C3orf85A0A1B0GTC6 90 aa13.18□□□□□ -0.3
CCDC40-202ENST00000374876 MPPED1O15442 326 aa13.18□□□□□ -0.3
CCDC40-202ENST00000374876 LILRA1O75019 489 aa13.18□□□□□ -0.3
CCDC40-202ENST00000374876 RCC1P18754 421 aaPredicted RBP13.18□□□□□ -0.3
CCDC40-202ENST00000374876 KIR2DS4P43632 304 aa13.18□□□□□ -0.3
CCDC40-202ENST00000374876 TMEM33P57088 247 aa13.18□□□□□ -0.3
CCDC40-202ENST00000374876 KIR2DS1Q14954 304 aa13.18□□□□□ -0.3
CCDC40-202ENST00000374876 FBXL19-AS1Q494R0 122 aa13.18□□□□□ -0.3
CCDC40-202ENST00000374876 SPIN3Q5JUX0 258 aa13.18□□□□□ -0.3
CCDC40-202ENST00000374876 ATRAIDQ6UW56 229 aa13.18□□□□□ -0.3
CCDC40-202ENST00000374876 MEX3BQ6ZN04 569 aaKnown RBP13.18□□□□□ -0.3
CCDC40-202ENST00000374876 LINC00596Q86U02 117 aa13.18□□□□□ -0.3
CCDC40-202ENST00000374876 ZNF565Q8N9K5 539 aa13.18□□□□□ -0.3
CCDC40-202ENST00000374876 SAT2Q96F10 170 aaPredicted RBP13.18□□□□□ -0.3
CCDC40-202ENST00000374876 TP53RKQ96S44 253 aa13.18□□□□□ -0.3
CCDC40-202ENST00000374876 TMED3Q9Y3Q3 217 aa13.18□□□□□ -0.3
CCDC40-202ENST00000374876 TRDCB7Z8K6 153 aa13.17□□□□□ -0.3
CCDC40-202ENST00000374876 GAPDHP04406 335 aaKnown RBP13.17□□□□□ -0.3
CCDC40-202ENST00000374876 SCTP09683 121 aa13.17□□□□□ -0.3
CCDC40-202ENST00000374876 IL32P24001 234 aa13.17□□□□□ -0.3
CCDC40-202ENST00000374876 GNRHRP30968 328 aa13.17□□□□□ -0.3
CCDC40-202ENST00000374876 ARHGDIBP52566 201 aa13.17□□□□□ -0.3
CCDC40-202ENST00000374876 AKR1C2P52895 323 aa13.17□□□□□ -0.3
CCDC40-202ENST00000374876 SRPXP78539 464 aa13.17□□□□□ -0.3
CCDC40-202ENST00000374876 AKR1C1Q04828 323 aa13.17□□□□□ -0.3
CCDC40-202ENST00000374876 TSC22D1Q15714 1073 aa13.17□□□□□ -0.3
CCDC40-202ENST00000374876 OR2T2Q6IF00 324 aa13.17□□□□□ -0.3
CCDC40-202ENST00000374876 FBXW12Q6X9E4 464 aa13.17□□□□□ -0.3
CCDC40-202ENST00000374876 BEND4Q6ZU67 534 aa13.17□□□□□ -0.3
CCDC40-202ENST00000374876 SECTM1Q8WVN6 248 aa13.17□□□□□ -0.3
CCDC40-202ENST00000374876 ZNF488Q96MN9 340 aa13.17□□□□□ -0.3
CCDC40-202ENST00000374876 SMIM3Q9BZL3 60 aa13.17□□□□□ -0.3
CCDC40-202ENST00000374876 AMDHD2Q9Y303 409 aa13.17□□□□□ -0.3
CCDC40-202ENST00000374876 HECTD1Q9ULT8 2610 aa13.17□□□□□ -0.3
CCDC40-202ENST00000374876 NBPF19A0A087WUL8 3843 aa13.17□□□□□ -0.3
CCDC40-202ENST00000374876 TMEM218A2RU14 115 aa13.17□□□□□ -0.3
CCDC40-202ENST00000374876 CA6P23280 308 aa13.17□□□□□ -0.3
CCDC40-202ENST00000374876 TBC1D28Q2M2D7 210 aa13.17□□□□□ -0.3
CCDC40-202ENST00000374876 SPATA46Q5T0L3 261 aa13.17□□□□□ -0.3
CCDC40-202ENST00000374876 TMEM268Q5VZI3 342 aa13.17□□□□□ -0.3
CCDC40-202ENST00000374876 IL34Q6ZMJ4 242 aa13.17□□□□□ -0.3
CCDC40-202ENST00000374876 SLC35G3Q8N808 338 aa13.17□□□□□ -0.3
CCDC40-202ENST00000374876 LHFPL5Q8TAF8 219 aa13.17□□□□□ -0.3
CCDC40-202ENST00000374876 RIMS4Q9H426 269 aaPredicted RBP13.17□□□□□ -0.3
CCDC40-202ENST00000374876 NUPL2O15504 423 aaKnown RBP13.16□□□□□ -0.3
CCDC40-202ENST00000374876 MED6O75586 246 aa13.16□□□□□ -0.3
CCDC40-202ENST00000374876 CTXN2P0C2S0 81 aa13.16□□□□□ -0.3
CCDC40-202ENST00000374876 ATF4P18848 351 aaPredicted RBP13.16□□□□□ -0.3
CCDC40-202ENST00000374876 IL24Q13007 206 aa13.16□□□□□ -0.3
CCDC40-202ENST00000374876 ZNF273Q14593 569 aa13.16□□□□□ -0.3
CCDC40-202ENST00000374876 C5orf24Q7Z6I8 188 aa13.16□□□□□ -0.3
CCDC40-202ENST00000374876 CXorf67Q86X51 503 aaPredicted RBP13.16□□□□□ -0.3
CCDC40-202ENST00000374876 FAM58AQ8N1B3 248 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 112.2 ms