RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 UBE2E2Q96LR5 201 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 ZNF488Q96MN9 340 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 GPR22Q99680 433 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 TMED9Q9BVK6 235 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 PARD6GQ9BYG4 376 aaPredicted RBP1.44□□□□□ -2.18
CD44-239ENST00000639002 ARV1Q9H2C2 271 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 OR51B5Q9H339 312 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 OR51B6Q9H340 312 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 IL37Q9NZH6 218 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 LSM5Q9Y4Y9 91 aaKnown RBP1.44□□□□□ -2.18
CD44-239ENST00000639002 ORC6Q9Y5N6 252 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 MTCH2Q9Y6C9 303 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 NAV3Q8IVL0 2385 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 ADAMTSL3P82987 1691 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 STAB1Q9NY15 2570 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 VWFP04275 2813 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 ZNF532Q9HCE3 1301 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 PDE4DIPQ5VU43 2346 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 TICRRQ7Z2Z1 1910 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 IGLV1-36A0A0B4J1U3 117 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 A0A0U1RQV1 116 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 A0A1W2PQL4 384 aaPredicted RBP1.43□□□□□ -2.18
CD44-239ENST00000639002 NDUFC2-KCTD14E9PQ53 114 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 H7C1H1 209 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 H7C417 338 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 J3QLI3 93 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 DNASE2O00115 360 aaPredicted RBP1.43□□□□□ -2.18
CD44-239ENST00000639002 PGRMC1O00264 195 aaKnown RBP1.43□□□□□ -2.18
CD44-239ENST00000639002 UPK2O00526 184 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 FGF16O43320 207 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 RAD1O60671 282 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 CTNSO60931 367 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 SCO1O75880 301 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 SERPINA1P01009 418 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 HLA-DQB1P01920 261 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 IFNA16P05015 189 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 IL6P05231 212 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 CDK1P06493 297 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 THRAP10827 490 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 UCHL3P15374 230 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 GABRG2P18507 467 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 ME2P23368 584 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 CFL1P23528 166 aaKnown RBP1.43□□□□□ -2.18
CD44-239ENST00000639002 PSMA1P25786 263 aaKnown RBP1.43□□□□□ -2.18
CD44-239ENST00000639002 GRPRP30550 384 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 PYCR1P32322 319 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 GGT2P36268 569 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 TGFBR1P36897 503 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 IFNGR2P38484 337 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 CBX5P45973 191 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 SULT1A1P50225 295 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 SULT1A2P50226 295 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 CCL23P55773 120 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 RAB25P57735 213 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 CXCR4P61073 352 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 RPL23P62829 140 aaKnown RBP1.43□□□□□ -2.18
CD44-239ENST00000639002 CDK5Q00535 292 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 IFITM3Q01628 133 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 CYP24A1Q07973 514 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 PDK2Q15119 407 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 OR1Q1Q15612 314 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 MAPK14Q16539 360 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 HLA-DRB5Q30154 266 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 ATP6AP1LQ52LC2 224 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 ACTBL2Q562R1 376 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 TTC32Q5I0X7 151 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 LAMTOR1Q6IAA8 161 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 TNFAIP8L2Q6P589 184 aaPredicted RBP1.43□□□□□ -2.18
CD44-239ENST00000639002 CD200R1LQ6Q8B3 271 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 SLC16A13Q7RTY0 426 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 SMIM15Q7Z3B0 74 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 FAM19A1Q7Z5A9 133 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 SLC51BQ86UW2 128 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 RIBC1Q8N443 379 aaPredicted RBP1.43□□□□□ -2.18
CD44-239ENST00000639002 C2orf73Q8N5S3 287 aaPredicted RBP1.43□□□□□ -2.18
CD44-239ENST00000639002 NPWQ8N729 165 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 OR52E4Q8NGH9 312 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 OR6N1Q8NGY5 312 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 OR1P1Q8NH06 330 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 TEX47Q8TBZ9 253 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 DTD1Q8TEA8 209 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 BLNKQ8WV28 456 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 RXFP2Q8WXD0 754 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 AP3S1Q92572 193 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 SLC25A46Q96AG3 418 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 TMEM159Q96B96 161 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 TLCD1Q96CP7 247 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 TMA16Q96EY4 203 aaKnown RBP1.43□□□□□ -2.18
CD44-239ENST00000639002 PACRGQ96M98 296 aaPredicted RBP1.43□□□□□ -2.18
CD44-239ENST00000639002 METTL26Q96S19 204 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 PHB2Q99623 299 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 C20orf144Q9BQM9 153 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 FAAP24Q9BTP7 215 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 EMC6Q9BV81 110 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 TAPBPLQ9BX59 468 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 ULBP1Q9BZM6 244 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 SLIRPQ9GZT3 109 aaKnown RBP1.43□□□□□ -2.18
CD44-239ENST00000639002 FGF23Q9GZV9 251 aaPredicted RBP1.43□□□□□ -2.18
CD44-239ENST00000639002 OR52D1Q9H346 318 aa1.43□□□□□ -2.18
CD44-239ENST00000639002 C12orf4Q9NQ89 552 aa1.43□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms